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cdmlib / cdmlib-model / src / main @ c6423b90

# Date Author Comment
c6423b90 12/11/2014 04:29 PM Andreas Müller

test for Amplification labelCache

73518da2 12/11/2014 04:02 PM Andreas Müller

implement Amplification.labelCache generation

747a744e 12/11/2014 03:51 PM Patrick Plitzner
  • added cascade saving for amplification result
    • made constructor protected to avoid JavaAssistEnhancementException
ab739787 12/11/2014 03:30 PM Andreas Müller

doc

2ab8cfdd 12/11/2014 03:29 PM Andreas Müller

handle duplicates in identifier list

acdad405 12/11/2014 12:07 AM Andreas Müller

solve identifier conflict

c2c7b79b 12/10/2014 11:23 PM Andreas Müller

Bidirectional identifier handling

b1e7575d 12/10/2014 11:22 PM Andreas Müller

latest changes to AmplificationResult and DnaQuality

af44092f 12/10/2014 10:40 PM Andreas Müller

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

a2c31205 12/09/2014 11:29 PM Andreas Müller

JAXB annotations for amplification results

4c96041a 12/09/2014 10:26 PM Andreas Müller

latest changes for AmplificationResult

bdfdcda2 12/09/2014 05:34 PM Andreas Müller

add labelCache to Amplification #4542

a491689c 12/09/2014 05:33 PM Andreas Müller

some bugfixes to new Amplification modelling #4541

fcab75e4 12/09/2014 05:09 PM Andreas Müller

some adaptations after trunk merge to 3.4.1

af283637 12/09/2014 05:03 PM Patrick Plitzner

merge-update from trunk

2d717c7c 12/09/2014 04:46 PM Andreas Müller

dna Quality purification method

45389cbe 12/09/2014 04:45 PM Andreas Müller

label for PAT voc

395ccc97 12/09/2014 04:44 PM Andreas Müller

separate Amplification and AmplificationResult.java #4541

c1d8fdfa 12/04/2014 03:29 PM Patrick Plitzner
  • re-added hibernate annotation
8cd3690c 12/04/2014 01:55 PM Patrick Plitzner

-removed hibernate search annotation (copy&paste error)

b141d6fb 12/04/2014 09:43 AM Patrick Plitzner
  • fixed bidriectionality for DnaSample<->Amplification
9f976540 12/03/2014 11:55 PM Andreas Müller

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

6571e4e5 12/03/2014 10:13 PM Andreas Müller

implement SingleReadAlignment.java #4529
not yet ready

e850e1c8 12/03/2014 10:12 PM Andreas Müller

minor changes

93613cac 12/03/2014 01:31 PM Patrick Plitzner
  • implemented bidirectionality for derivation events
01a5514b 12/03/2014 01:29 PM Andreas Müller

some fixes after trunk integration to 341branch

ec352541 12/03/2014 01:22 PM Patrick Plitzner

merge-update from trunk

61b380b5 12/03/2014 10:21 AM Andreas Müller

add first version of BigDecimal (still unclear if we want to keep the UserType) #4499

ccf1f2f1 12/03/2014 10:03 AM Andreas Müller

merge PresenceTerm and AbsenceTerm #4521

e5a1b835 12/02/2014 12:43 PM Andreas Müller

remove TODO

b71032bb 12/01/2014 02:47 PM Patrick Plitzner
  • fixed bidirectional mapping
34902b3c 11/27/2014 01:52 PM Andreas Müller

remove FIMXE on protected constructor

724c80be 11/26/2014 03:04 PM Andreas Müller

creationi fo PresenceAbsence Terms

589ecf52 11/26/2014 02:30 PM Andreas Müller

make all defined terms comparable

adac5022 11/24/2014 10:12 AM Patrick Plitzner
  • converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
502ea305 11/21/2014 02:21 PM Andreas Müller

Add institution to DerivationEvent and Amplification

0e660e76 11/21/2014 01:55 PM Andreas Müller

add DnaMarker to Primer #4470

0386b59c 11/21/2014 10:24 AM Andreas Müller
710c18d5 11/21/2014 10:16 AM Andreas Müller

add DNA Quality Type vocabulary

d979d3a0 11/19/2014 05:44 PM Andreas Müller

Add DnaQuality.csv (not fully ready)

03aae089 11/18/2014 09:52 AM Cherian Mathew

ICdmCacher, DefaultTermInitializer : added comments
CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDaoCacher : replaced with specialised CdmTermCacher
defaultApplicationContext : removed remoting exception

efe169cc 11/17/2014 06:31 PM Andreas Müller

cleanup javadoc

66bd03c6 11/17/2014 05:50 PM Andreas Müller

update JaxbImportActivator

c8ea97e3 11/12/2014 03:41 PM Patrick Plitzner
  • fixed possible NPE
1446141f 11/12/2014 03:31 PM Patrick Plitzner
  • fixed typo with semantic meaning
0a5d335c 11/12/2014 09:51 AM Patrick Plitzner
  • used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
    • fixed a typo
5c58acf0 11/11/2014 09:18 AM Patrick Plitzner
  • fixed typo
25ec2e67 11/04/2014 02:58 PM Patrick Plitzner
  • provide contig and read information in portal and webservice
3f9e57cd 10/29/2014 11:39 AM Patrick Plitzner
  • added exception throwing to URI assembly in Sequence class
    • handled exception in editor details view
1fec1343 10/28/2014 03:27 PM Patrick Plitzner
  • made constructor protected to avoid JavaAssistEnhancementException
84cd76e8 10/23/2014 09:20 AM Andreas Müller

revert contact URLs #3920, #4444

ce09e28c 10/22/2014 10:57 PM Andreas Müller

workaround for Contact.urls to solve #4444 preliminary

7021f5c7 10/22/2014 03:48 PM Andreas Müller

reduce size of contact URI due to key length problems

da3a032b 10/21/2014 03:36 PM Patrick Plitzner
  • removed accidentally committed class
b1fe1297 10/21/2014 03:32 PM Patrick Plitzner
  • merge-update from trunk
16552d3b 10/21/2014 03:24 PM Andreas Müller

new convenience method

2c6ae9a6 10/21/2014 02:50 PM Patrick Plitzner

merge-update from trunk

1c6e6c0e 10/21/2014 01:59 PM Andreas Müller

fix init problem for DnaSample

627cb878 10/21/2014 01:21 PM Andreas Müller

bugfix for clone and setDnaSample

42b8a25b 10/21/2014 01:15 PM Andreas Müller

remove debug

8bd8009e 10/21/2014 01:15 PM Andreas Müller

new NewInstance for TermVocabulary

cc1af289 10/21/2014 12:42 PM Patrick Plitzner

merge-update from trunk

6f9c3480 10/21/2014 11:52 AM Andreas Müller

add a bit more bidirectionality to DnaSample/Sequence

4dc84326 10/21/2014 07:51 AM Andreas Müller

return nameRelationship

eb2b587d 10/21/2014 12:25 AM Andreas Müller

cascade SingleRead.materialOrMethod

e1030562 10/20/2014 08:21 PM Andreas Müller

add validation framework classes #4439

323da513 10/20/2014 08:02 PM Andreas Müller

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

b998a5a0 10/20/2014 03:35 PM Andreas Müller

make primer.sequence a SequenceString #4139

8678bd8d 10/20/2014 02:17 PM Andreas Müller

add indexed adder and remove method to identifier list

f6d5e560 10/18/2014 04:27 AM Andreas Müller

add i18n description for Classification. #4428

7b23180d 10/18/2014 03:58 AM Andreas Müller

Geo and time scope for Classifications #3699

f539d24c 10/18/2014 03:51 AM Andreas Müller

Geo and time scope for Classifications #3699

0a345e59 10/18/2014 03:14 AM Andreas Müller

first implementation for DnaQuality #4434

9af6d56b 10/18/2014 12:30 AM Andreas Müller

Make Contact URL an url #3920

49e8fcf3 10/17/2014 11:45 PM Andreas Müller

Make Contact URL an url #3920

45732b87 10/17/2014 11:04 PM Andreas Müller

remove View class #4316 and update script for authorTeam rename #4432

6dc32b87 10/17/2014 10:31 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

9fda2b40 10/17/2014 10:00 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

ec1059aa 10/17/2014 09:31 PM Andreas Müller

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

e1381d55 10/17/2014 09:03 PM Andreas Müller

added NotNull constraints to User.username, Group.name, GrantedAuthorityImpl.authority #4382

1ddb7fb8 10/17/2014 08:56 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

f89911d1 10/17/2014 08:53 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

7e045089 10/17/2014 08:06 PM Andreas Müller

remove series from Reference #4293

20ff76b1 10/17/2014 07:33 PM Andreas Müller

add IdentifierType Vocabulary

54e8de3a 10/17/2014 06:49 PM Andreas Müller

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

91f7a0de 10/17/2014 04:13 PM Andreas Müller

adapt tests to 3.4

f9ef6d75 10/17/2014 12:41 PM Andreas Müller

minor

c2f9bfc4 10/17/2014 12:38 PM Andreas Müller

make Identifiers a List

f297402d 10/16/2014 04:35 PM Patrick Plitzner

merge-update from trunk

bbcd9fc7 10/15/2014 02:22 PM Andreas Müller

minor

ab4be4ea 10/14/2014 02:31 PM Katja Luther

@Audited has to be added to the sourceType then the sourceType column of the OriginalSource_aud allows null values. (#4396)

f9b13c9b 10/14/2014 01:21 PM Patrick Plitzner

merge-update from trunk

d477df1d 10/14/2014 01:21 PM Katja Luther
bda092da 10/14/2014 09:56 AM Patrick Plitzner

merge-update from trunk

5b99edea 10/14/2014 09:53 AM Patrick Plitzner
  • re-enabled identifier set in IdentifiableEntity
e5f42a92 10/14/2014 09:40 AM Patrick Plitzner
  • fixed copy&paste error in Primer.change()
ff0d856d 10/13/2014 04:03 PM Andreas Müller

add serial version number

c200d18b 10/09/2014 01:44 PM Patrick Plitzner

merge-update from trunk

a22369e9 10/08/2014 12:59 PM Katja Luther
c52b7e11 10/02/2014 01:00 PM Katja Luther

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

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