test for Amplification labelCache
implement Amplification.labelCache generation
doc
handle duplicates in identifier list
solve identifier conflict
Bidirectional identifier handling
latest changes to AmplificationResult and DnaQuality
updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552
JAXB annotations for amplification results
latest changes for AmplificationResult
add labelCache to Amplification #4542
some bugfixes to new Amplification modelling #4541
some adaptations after trunk merge to 3.4.1
merge-update from trunk
dna Quality purification method
separate Amplification and AmplificationResult.java #4541
-removed hibernate search annotation (copy&paste error)
fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence
implement SingleReadAlignment.java #4529 not yet ready
minor changes
some fixes after trunk integration to 341branch
add first version of BigDecimal (still unclear if we want to keep the UserType) #4499
merge PresenceTerm and AbsenceTerm #4521
remove TODO
remove FIMXE on protected constructor
creationi fo PresenceAbsence Terms
make all defined terms comparable
Add institution to DerivationEvent and Amplification
add DnaMarker to Primer #4470
add DNA Quality Type vocabulary
Add DnaQuality.csv (not fully ready)
ICdmCacher, DefaultTermInitializer : added comments CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass CdmDaoCacher : replaced with specialised CdmTermCacher defaultApplicationContext : removed remoting exception
cleanup javadoc
update JaxbImportActivator
revert contact URLs #3920, #4444
workaround for Contact.urls to solve #4444 preliminary
reduce size of contact URI due to key length problems
new convenience method
fix init problem for DnaSample
bugfix for clone and setDnaSample
remove debug
new NewInstance for TermVocabulary
add a bit more bidirectionality to DnaSample/Sequence
return nameRelationship
cascade SingleRead.materialOrMethod
add validation framework classes #4439
further changes to DnaQuality #4434 and update script for ValidationFramework alpha version
make primer.sequence a SequenceString #4139
add indexed adder and remove method to identifier list
add i18n description for Classification. #4428
Geo and time scope for Classifications #3699
first implementation for DnaQuality #4434
Make Contact URL an url #3920
remove View class #4316 and update script for authorTeam rename #4432
rename Reference.authorTeam -> authorship #4432
adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382
added NotNull constraints to User.username, Group.name, GrantedAuthorityImpl.authority #4382
remove series from Reference #4293
add IdentifierType Vocabulary
fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers
adapt tests to 3.4
minor
make Identifiers a List
@Audited has to be added to the sourceType then the sourceType column of the OriginalSource_aud allows null values. (#4396)
add serial version number
adapted tcs rdf and xml import, using apache jena for rdf import tcs import for caryophylales minor
Added null checks for comparator
