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cdmlib / cdmlib-model / src / main / java / eu / etaxonomy / cdm / model @ c52b7e11

# Date Author Comment
c52b7e11 10/02/2014 01:00 PM Katja Luther

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

c32e5e5f 09/19/2014 11:11 AM Alexander Oppermann

Added null checks for comparator

6d735eab 09/11/2014 02:05 PM Andreas Müller

update javadoc for OrderedTermBase.compareTo

79d8b2c8 09/11/2014 02:02 PM Andreas Müller

minor javadoc

565ed3cc 09/11/2014 01:21 PM Katja Luther

compare classes instead of voc

932b70fe 09/11/2014 12:44 PM Andreas Müller

add override

1ace2294 09/11/2014 12:02 PM Katja Luther

overwrite the performCompareTo method in PresenceAbsenceTermBase for a comparison of presence and absence terms (presence terms are sorted before absence terms)

75b69afd 09/10/2014 02:52 PM Patrick Plitzner
  • removed @Cascade for country in GatheringEvent because DefinedTerms should not be cascaded
    • added new service method to occurence service to find all CDM entities that are not saved via cascading
    • added tests for new method
    • added test for concurrent session saving of terms...
252e0049 09/10/2014 12:35 PM Andreas Müller

typos

38613fbc 09/09/2014 12:02 PM Patrick Plitzner
  • added cascading to setOfReferences in DeterminationEvent
e8534b1d 09/04/2014 11:39 AM Andreas Kohlbecker

reverting hack related to #4368 (caching api causes bug in Rank.getAbbreviation())

f2a5f604 09/02/2014 04:54 PM Andreas Müller

some generics

cf6f9551 09/02/2014 04:51 PM Andreas Müller

minor

fe3d023f 08/26/2014 12:16 PM Andreas Kohlbecker

refactoring taxon controllers, reducing code duplication

f52b07f3 08/22/2014 01:20 PM Andreas Kohlbecker

adding @Transient to new API methods introduced for #3327 (better API for OrderedTermBase and OrderedTermVocabulary)

04e1aa91 08/21/2014 09:52 AM Patrick Plitzner
  • generalized simple user interface to add media (#3339)
5a449d16 08/19/2014 05:14 PM Patrick Plitzner
  • changed HashMap to LinkedHashMap to keep order of insertion
    • this should fix #3242
1351da13 08/19/2014 04:35 PM Andreas Müller

remove old and misleading titleCache length

88f061f8 08/19/2014 04:27 PM Andreas Müller

minor

891ae7a8 08/19/2014 04:26 PM Andreas Müller

remove TODO

d0e1f771 08/18/2014 09:58 AM Katja Luther
23dc9c55 08/12/2014 10:33 AM Katja Luther

isAncestor() using treeIndex

d4657a24 08/11/2014 02:56 PM Andreas Müller

better handling of abbreviated title cache in references, series -> seriesPart and some improvements in the reference cache strategies #4280, #4239

abde1c30 08/08/2014 03:54 PM Andreas Müller

Change authorTeam types in NonViralName from INomenclaturalAuthor to TeamOrPersonBase #1489

8687d093 08/07/2014 06:27 PM Andreas Müller

implement getNextHigherTerm and getNextLowerTerm #3327

0af6ff2f 08/07/2014 05:32 PM Andreas Müller

cleaning up CdmBase

b54b47aa 08/05/2014 07:34 AM Andreas Kohlbecker

reverting erroneously committed experimental branch (swagger)

d0821182 08/04/2014 06:26 PM Andreas Kohlbecker

ignoring joda time partial from json serialization for swagger model scanner

6c629eea 08/04/2014 06:26 PM Andreas Kohlbecker

implementing CdmTypeScanner and test

c7fdc67d 07/30/2014 05:52 PM Andreas Müller

minor

5891b5f0 07/18/2014 02:48 PM Andreas Müller

minor

9aa01c88 07/09/2014 06:42 PM Cherian Mathew

increased storage capacity of mock cdm cachers

4d160610 07/09/2014 05:24 PM Cherian Mathew

removed 2.6.9 reference

9f24d9a0 07/09/2014 04:39 PM Andreas Müller

move MockCdmCacher to TermLoader

c20a343c 07/09/2014 03:19 PM Andreas Müller

fix failing single model test due to new MockCdmCacher

ed0e00d0 07/08/2014 10:19 AM Andreas Müller

minor

fb7c2911 07/02/2014 05:57 PM Andreas Müller

create new vocabulary for MediaSpecimenKindOfUnit, move Detail image and Specimen scan from old to new vocabulary and create new terms Living plant photo and Artwork #4269

9ef7b6ea 07/02/2014 04:16 PM Andreas Müller

fixing #4278 for FeatureNode

29f176f5 07/02/2014 04:11 PM Andreas Müller

fixing #4278 for PolytomousKeys

df879c1f 07/02/2014 03:42 PM Andreas Müller

alternative for protected: deproxy #4200

c40252b2 07/02/2014 03:17 PM Andreas Müller

cleaning up TaxonNode class and also refactoring solution for #4200

61380896 07/02/2014 10:46 AM Andreas Müller

fixing sortindex issue #4200

2a678241 07/02/2014 10:45 AM Andreas Müller

minor

6f121a67 06/30/2014 06:04 PM Andreas Müller

convenience access for new kindOfUnit uuids #4269

93f50b5e 06/25/2014 04:32 PM Cherian Mathew

First commit for the CDM Caching api
ICdmCacher, CdmCacher : CDM Cache class based on Ehcache
defaultApplicationContext.xml : added cache package to be component scanned
DefinedTermBase : new set/getCdmCacher method to make cacher available to term classes...

221619fa 06/23/2014 01:15 PM Andreas Müller

minor

28409aeb 06/18/2014 05:53 PM Andreas Müller

javadoc

cc57dbe5 06/13/2014 11:46 AM Andreas Müller

start bugfixing and refactoring sortindex handling in TaxonNode

37baacf3 06/11/2014 04:22 PM Patrick Plitzner
  • added null check
346f3a9d 06/03/2014 06:09 PM Andreas Müller

fix "Error occurred when trying retrieve title for Named Area"

e2ebeba0 06/03/2014 04:35 PM Patrick Plitzner
7e1ef8ec 06/02/2014 06:53 PM Andreas Müller

fix for TaxonComparatorSearch

0062b549 05/29/2014 01:34 AM Andreas Müller

improve to better fulfill the Comparator contract

cccbf120 05/29/2014 01:21 AM Andreas Müller

improve to better fulfill the Comparator contract

f215d86d 05/29/2014 01:10 AM Andreas Müller

improve TaxonComparator to better fulfill the general Comparator contract.

90ec47d5 05/29/2014 12:35 AM Andreas Müller

further improve comparator contract implementation for TaxonComparatorSearch #4230

86c333fb 05/28/2014 07:46 PM Andreas Müller

remove logging

120d9f0f 05/28/2014 07:45 PM Andreas Müller

fixing #4230, comparison issue

92e1856d 05/15/2014 06:22 PM Andreas Müller

serial Version ID for HomGroup

1267f8b4 05/15/2014 01:39 PM Andreas Müller

better handling NewInstance in DerivedUnit

072bdb69 05/15/2014 12:58 PM Katja Luther

set getDescendants back to protected, remove @transient

7fa63671 05/14/2014 11:42 AM Cherian Mathew

adding transient annotaion so that it is ignored in serializing

8e86263f 05/14/2014 09:15 AM Patrick Plitzner
  • made move methods session-safe by reloading the cdm entities
    • enhanced/added test
    • made constructor of PreservationMethod protected to avoid JavaAssistEnhancementException
cc3556cd 05/13/2014 12:44 PM Katja Luther

set getDescendants() public

a10163ea 05/09/2014 11:03 AM Andreas Müller

fixing bug for missing reference type

60d8ad91 05/09/2014 10:24 AM Andreas Müller

implement cache strategy for section references and remove generics from reference cache strategies.

70c786d3 05/08/2014 11:36 AM Andreas Müller

Add preliminary SectionCacheStrategy and remove generics from reference cache strategies

69f27baa 05/07/2014 10:23 AM Andreas Müller

adding Gazetteer to ReferenceSystem

00bbb5f4 05/06/2014 03:49 PM Andreas Müller

fix for loading continents correctly

b5157670 04/23/2014 01:43 PM Patrick Plitzner
  • added cascade saving to PreservationMethod of DerivedUnit
f160e5a4 04/10/2014 02:17 PM Andreas Müller

log childIndex is null

6bf0ea8f 04/10/2014 02:16 PM Andreas Müller

fix logging for taxa used multiple times in addParentChild

13d17320 04/01/2014 08:50 AM Patrick Plitzner
  • added two NewInstance() methods to Amplification
    • added getUuidAndDescriptions to IAmplificationService and DAO
8640593e 03/31/2014 12:25 PM Katja Luther

add tests for treeIndex and deletion of nodes

73ee5c85 03/27/2014 01:02 PM Andreas Kohlbecker

renaming protected setter to setStateData, see #2923 (Rename CategoricalData.states collection to stateData)

70d6b08b 03/25/2014 05:01 PM Patrick Plitzner
  • added removeSingleRead() method to Amplification
3b98b0db 03/20/2014 01:50 PM Katja Luther

#4114 sort order in taxon navigator and adding that autonyms could be whether infraspecific or infrageneric (Art. 22.3 and 26.3)

0f24bfe5 03/17/2014 01:30 PM Katja Luther

fix compareTo for IdentifiableEntity

f295355d 03/17/2014 09:36 AM Patrick Plitzner
  • added reference to trac ticket
c09b4938 03/17/2014 08:53 AM Patrick Plitzner
43e4bbeb 03/17/2014 08:52 AM Patrick Plitzner
  • fixed a bug in the automated setting of the string length
4bdeb27e 03/15/2014 02:36 AM Andreas Müller

fix missing idInVocabulary for countries; implement country mapping for EditGeoService (#3452, #3651)

64fddb1b 03/14/2014 09:52 PM Andreas Müller

add NomStatus vocabulary for ICZN #4085

9f86020d 03/14/2014 08:46 PM Andreas Müller

Added IsoParaType to SpecimenTypeDesignationStatus

3d03a83f 03/13/2014 01:22 PM Andreas Kohlbecker

implementing test and fixing bugs regarding #4081 (TaxonNodeServiceImpl.makeTaxonNodeASynonymOfAnotherTaxonNode() requires TAXONNAMEBASE.[UPDATE])

a80ab4d7 03/13/2014 01:15 PM Cherian Mathew

changed isTopmostNode to check for null parent node taxon

c14fc0ed 03/07/2014 08:55 PM Andreas Müller

Add database index on treeIndex #4105

e28e4b81 03/07/2014 06:33 PM Andreas Müller

minor

0df84d71 03/07/2014 05:36 PM Andreas Kohlbecker

making TaxonNodeByNameComparator truely null save - #2912 (NPE in TaxonNodeByNameComparator when Taxon in TaxoNode is null)

7a3f759c 03/06/2014 01:46 AM Andreas Müller

minor and generics

e84380bd 03/05/2014 03:28 PM Patrick Plitzner
  • added cascading save to SequenceString of a Sequence
ec766423 03/04/2014 09:20 AM Patrick Plitzner
  • added cascading save for contig file of Sequence
824432c0 03/03/2014 09:48 AM Patrick Plitzner
  • added cascading save to pherogram (Media) of SingleRead
    • added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)
0ad365ec 02/28/2014 11:45 AM Andreas Kohlbecker

implementing #4082 (implement default permission groups)

35c1196a 02/27/2014 09:41 AM Katja Luther

fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group

899d760b 02/21/2014 10:33 PM Andreas Müller

toString for Reference

6388be87 02/21/2014 10:32 PM Andreas Müller

minor

a6304a40 02/14/2014 05:47 PM Andreas Müller

minor

a258326e 02/14/2014 05:46 PM Andreas Müller

correct generics for classification

6e861bce 02/14/2014 05:37 PM Andreas Müller

make description.setTaxon protected and cleanup cyprus altitudes and destinations

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