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cdmlib / cdmlib-io / src / test / java / eu @ a0ee91b9

# Date Author Comment
a0ee91b9 07/05/2016 12:52 PM Andreas Müller

Cleanup

4344fddf 07/01/2016 02:33 PM Andreas Müller

Adapt test dataset loading to standard path

531fc7bc 05/25/2016 12:11 PM Andreas Müller

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

0ecfd682 04/28/2016 03:47 PM Andreas Müller

Remove bidirectionality for supplemental data #5743

ef1b5da2 04/28/2016 03:47 PM Andreas Müller

Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

f8edbccb 12/21/2015 04:50 PM Andreas Kohlbecker

resolving conflicts after merge of ticket_4716 into develop

a1439def 12/17/2015 12:28 PM Andreas Müller

Cleanup description generics (related to #5357)

b1c5e27c 12/11/2015 11:27 AM Andreas Kohlbecker

organizing imports

8c34728e 11/23/2015 04:13 PM Andreas Müller

Update to hibernate 5 for cdmlib-io #4716

8a386b2c 11/23/2015 04:10 PM Andreas Müller

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

3387bfe5 11/16/2015 04:42 PM Patrick Plitzner

Remove failing legacy test

eee9b39a 11/16/2015 03:05 PM Patrick Plitzner

Refactored import return type from boolean to ImportResult

a6e724f8 09/01/2015 08:24 AM Patrick Plitzner

Add test for non-parsabel taxon name

04a445b3 08/31/2015 03:50 PM Patrick Plitzner

Add new test for name parsing

2e4b9441 08/12/2015 03:32 PM Patrick Plitzner

Fix broken test

44dc26aa 08/12/2015 10:38 AM Patrick Plitzner

Fix UniqueKey issue for sequence ciations

39be9303 07/20/2015 01:28 AM Andreas Müller

Allow DwC-A import to filter streams and fix database mapping

3bbbc5c7 07/14/2015 01:30 PM Katja Luther
f99298e0 07/14/2015 01:29 PM Patrick Plitzner

Add test to @ignore

9c3564c5 07/13/2015 04:50 PM Patrick Plitzner

Add new GGBN import test

bda7e646 07/08/2015 11:22 AM Patrick Plitzner

Clear Terms before starting test

33262f8c 07/08/2015 07:34 AM Patrick Plitzner

Fix classification handling for new and exisiting taxa

8623af42 07/07/2015 05:20 PM Patrick Plitzner

Add new test for classification handling

6f2de612 07/07/2015 03:38 PM Patrick Plitzner

Test classification handling

0a545670 07/07/2015 09:18 AM Patrick Plitzner

Add tests for classification handling

e5c282bc 07/06/2015 03:59 PM Patrick Plitzner

Remove unneccessary check

d3746fc4 07/06/2015 01:39 PM Patrick Plitzner

Extend tests for GGBN import.

Checking field unit data.

3494aea3 07/02/2015 09:49 AM Patrick Plitzner

Add test for importing two dna units with associated units

8d1e4195 07/01/2015 10:55 AM Patrick Plitzner

Map preparation material to derivation event description

9577e96c 07/01/2015 10:55 AM Patrick Plitzner

Test import of sparse ABCD file

18c0b932 06/30/2015 01:21 PM Patrick Plitzner

Evaluate unit association type in ABCD import

  • added test
  • correctly set derivative hierarchy
3a97226d 06/30/2015 09:49 AM Patrick Plitzner

Split up test for unit associations

e8255db1 06/30/2015 09:49 AM Patrick Plitzner

Parse sample designation in ABCD GGBN import

ed743b53 06/30/2015 09:49 AM Patrick Plitzner

Import associated units

  • Set derivation event correctly
  • adapted test
7b3adf28 06/30/2015 09:49 AM Patrick Plitzner

Import associated units via BioCase query

2574e41b 06/30/2015 09:49 AM Patrick Plitzner

Import associated units in ABCD import

Worked on the order of importing units especially when associated units
are present.
Adapted test.

891ced88 06/30/2015 09:49 AM Patrick Plitzner

??

631a9c22 06/30/2015 09:49 AM Patrick Plitzner

Import associated units in ABCD import

First changes

3f1d496b 06/30/2015 09:49 AM Patrick Plitzner
  • fixed date parsing
    • fixed primer saving
    • added new parameters to test
2bc696d1 06/30/2015 09:49 AM Patrick Plitzner
  • refactored dna parsing
    • added utility classes and person parser
    • adapted test
    • added parsing of more molecular parameters
9df1cbb4 06/15/2015 01:36 PM Patrick Plitzner
  • correctly cleaned up between test invocations
e5154356 06/15/2015 09:05 AM Patrick Plitzner
  • added test for "ignoreAuthorship" option
e42918a8 06/09/2015 04:13 PM Patrick Plitzner
  • added test to ignore because data base conflicts for later tests
a72ff755 06/09/2015 03:59 PM Patrick Plitzner
  • added test to ignore because data base conflicts for later tests
fe646ea5 06/09/2015 02:23 PM Patrick Plitzner
  • cleanup DB after test run
db49def5 06/09/2015 09:40 AM Patrick Plitzner
  • added more ggbn ABCD parameters to import and test
f407988d 06/08/2015 10:28 AM Patrick Plitzner
  • added more parameters to GGBN parser and test
2d1fb6dc 05/27/2015 04:53 PM Andreas Müller

cleanup code

c1b3fb1c 05/27/2015 04:39 PM Andreas Müller

try to fix ignored test #3279

e67e2853 05/27/2015 04:19 PM Andreas Müller

set failing test to ignore

5ab41d0f 05/27/2015 12:58 PM Andreas Müller

javadoc

7af4bdbe 05/27/2015 12:51 PM Andreas Müller

clean up old AbcdImport test #3279

a80117c1 05/27/2015 10:20 AM Andreas Müller

rename ABCD import tests

eaf1e9fa 05/27/2015 10:12 AM Andreas Müller

minor

a82fe35b 05/26/2015 06:03 PM Andreas Müller

minor cleanup

207d5d50 05/20/2015 02:03 PM Patrick Plitzner
  • implemented importing of DNA ABCD units
    • DNA sampled will be attached to already existing specimens
    • re-enabled tests
e7e7198b 05/18/2015 05:10 PM Patrick Plitzner
  • added tests to ignore because other tests fail :-/
33463936 05/18/2015 04:40 PM Patrick Plitzner
  • re-enabled and fixed ABCD import tests(#4910)
e1431eae 04/17/2015 03:41 PM Andreas Müller

upgrade unitils 3.3->3.4.2 #4636

d56948fa 04/13/2015 05:01 PM Patrick Plitzner
  • reverted temporary changes for titleCache generation
4224906f 04/09/2015 11:42 PM Patrick Plitzner
  • temporarily disabled test
7ec3473d 03/17/2015 11:04 AM Patrick Plitzner
  • added new test cases (still temporarily @Ignore)
bfcf9a73 03/16/2015 03:03 PM Patrick Plitzner
  • temporarily added test to ignore
89b754ae 03/16/2015 09:58 AM Patrick Plitzner
  • enhanced ggbn parsing
    • enhanced report
773c07cc 03/12/2015 08:57 PM Patrick Plitzner
  • added test to ignore temporarily
3dd71114 03/12/2015 07:53 PM Patrick Plitzner
  • added test to ignore temporarily
fbf34d08 03/04/2015 08:46 AM Patrick Plitzner
  • added config option to choose mapping of ABCD UnitID
    • added config option to ignore authorship when matching taxa
    • added first draft of ggbn extension parsing
7f82c67f 01/23/2015 04:12 PM Patrick Plitzner
  • added @Ignore to failing test -_-
42926411 01/23/2015 02:59 PM Patrick Plitzner
  • added ABCD import test for subspecies
905b7269 12/16/2014 09:29 PM Andreas Müller

add xslx test in io

60b96820 12/16/2014 09:05 PM Andreas Müller

minor

68ee041d 12/11/2014 09:32 PM Patrick Plitzner
  • change visibility of createTestDataSet to public
c9d7b4eb 12/10/2014 04:25 PM Patrick Plitzner

merge-update from trunk

d06ba760 12/10/2014 03:27 PM Patrick Plitzner
  • added abstract method createTestData() to CdmIntegrationalTest
    • method should be used for generatin test XML data sets
    • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....
9f976540 12/03/2014 11:55 PM Andreas Müller

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

cacc2f39 10/28/2014 07:20 PM Patrick Plitzner
  • extended init test
6dc32b87 10/17/2014 10:31 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

9fda2b40 10/17/2014 10:00 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

f89911d1 10/17/2014 08:53 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

91f7a0de 10/17/2014 04:13 PM Andreas Müller

adapt tests to 3.4

99881db7 10/16/2014 09:15 AM Patrick Plitzner
  • extended ABCD import test to check for AgentBase
c52b7e11 10/02/2014 01:00 PM Katja Luther

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

8992bc7f 09/22/2014 06:28 PM Andreas Müller

fix Specimen import test

5b9eb40a 09/18/2014 11:08 AM Andreas Müller

Ignore new Specimen Test as it fails to run in suite

ff7173c1 09/17/2014 02:35 PM Patrick Plitzner
  • fixed the unnecessary creation of multiple references and taxon nodes in ABCD import
    • added new ABCD import test
b9b87c1f 09/16/2014 03:17 PM Patrick Plitzner

-added CleanSweepInsertLoadStrategy to fix failing test

8b77762f 09/16/2014 01:52 PM Patrick Plitzner
  • refactored data structure for taxon identifications in ABCD import
    • trimming scientific names avoids creation of multiple taxa/taxon nodes
    • added check for number of taxon nodes to test
a10163ea 05/09/2014 11:03 AM Andreas Müller

fixing bug for missing reference type

0092a4a5 02/13/2014 12:25 PM Cherian Mathew

reverting back the cdm application configuration refatoring

c9b48c79 02/12/2014 02:15 PM Cherian Mathew

renaming CdmApplicationController to CdmApplicationDefaultController

205bb92b 01/09/2014 10:34 AM Alexander Oppermann

Merge with trunk

d1885b7b 12/18/2013 01:21 AM Andreas Müller

minor changes (remove logging of missing classification)

8546e4cd 12/02/2013 09:49 AM Alexander Oppermann

updated to trunk

b68adb94 11/10/2013 11:41 PM Andreas Müller

handle name cache in normal explicit import

e55d6c7a 11/04/2013 12:35 AM Andreas Müller

revert r19380

3801822d 11/03/2013 06:23 PM Andreas Müller

change DescriptionBase.descriptionElements to DescriptionBase.elements #3841

17f56886 10/24/2013 11:34 AM Alexander Oppermann

Major Update to cdmlib-3.3

  • Restructuring of vaadin Editor
1de96f38 10/24/2013 10:55 AM Patricia Kelbert

reintegrate branch patricia into trunk

a434540d 09/25/2013 01:37 PM Andreas Müller

merge trunk into cdmlib v3.3 branch

fb297954 09/19/2013 03:31 PM Andreas Müller

minor

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