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cdmlib / cdmlib-io / src / test / java / eu / etaxonomy / cdm / io / specimen / abcd206 @ 55dd353b

# Date Author Comment
55dd353b 01/30/2017 08:50 PM Andreas Müller

ref #6362 remove further occurrences of NonViralName

52221e05 12/02/2016 01:48 PM Katja Luther

fix failing test

c10a757f 10/18/2016 03:58 PM Andreas Müller


91e5776b 10/07/2016 10:52 AM Katja Luther

specimen import/search changes

81bcaf06 10/07/2016 10:22 AM Patrick Plitzner

Remove @Ignore from test

d3c53a58 10/07/2016 10:22 AM Katja Luther

specimen import changes

b5a13d3d 10/06/2016 05:02 PM Katja Luther

set the tests to ignore until the dna import is fixed again

4344fddf 07/01/2016 02:33 PM Andreas Müller

Adapt test dataset loading to standard path

531fc7bc 05/25/2016 12:11 PM Andreas Müller

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

8c34728e 11/23/2015 04:13 PM Andreas Müller

Update to hibernate 5 for cdmlib-io #4716

3387bfe5 11/16/2015 04:42 PM Patrick Plitzner

Remove failing legacy test

eee9b39a 11/16/2015 03:05 PM Patrick Plitzner

Refactored import return type from boolean to ImportResult

a6e724f8 09/01/2015 08:24 AM Patrick Plitzner

Add test for non-parsabel taxon name

04a445b3 08/31/2015 03:50 PM Patrick Plitzner

Add new test for name parsing

2e4b9441 08/12/2015 03:32 PM Patrick Plitzner

Fix broken test

44dc26aa 08/12/2015 10:38 AM Patrick Plitzner

Fix UniqueKey issue for sequence ciations

f99298e0 07/14/2015 01:29 PM Patrick Plitzner

Add test to @ignore

9c3564c5 07/13/2015 04:50 PM Patrick Plitzner

Add new GGBN import test

bda7e646 07/08/2015 11:22 AM Patrick Plitzner

Clear Terms before starting test

33262f8c 07/08/2015 07:34 AM Patrick Plitzner

Fix classification handling for new and exisiting taxa

8623af42 07/07/2015 05:20 PM Patrick Plitzner

Add new test for classification handling

6f2de612 07/07/2015 03:38 PM Patrick Plitzner

Test classification handling

0a545670 07/07/2015 09:18 AM Patrick Plitzner

Add tests for classification handling

e5c282bc 07/06/2015 03:59 PM Patrick Plitzner

Remove unneccessary check

d3746fc4 07/06/2015 01:39 PM Patrick Plitzner

Extend tests for GGBN import.

Checking field unit data.

3494aea3 07/02/2015 09:49 AM Patrick Plitzner

Add test for importing two dna units with associated units

8d1e4195 07/01/2015 10:55 AM Patrick Plitzner

Map preparation material to derivation event description

9577e96c 07/01/2015 10:55 AM Patrick Plitzner

Test import of sparse ABCD file

18c0b932 06/30/2015 01:21 PM Patrick Plitzner

Evaluate unit association type in ABCD import

  • added test
  • correctly set derivative hierarchy
3a97226d 06/30/2015 09:49 AM Patrick Plitzner

Split up test for unit associations

e8255db1 06/30/2015 09:49 AM Patrick Plitzner

Parse sample designation in ABCD GGBN import

ed743b53 06/30/2015 09:49 AM Patrick Plitzner

Import associated units

  • Set derivation event correctly
  • adapted test
7b3adf28 06/30/2015 09:49 AM Patrick Plitzner

Import associated units via BioCase query

2574e41b 06/30/2015 09:49 AM Patrick Plitzner

Import associated units in ABCD import

Worked on the order of importing units especially when associated units
are present.
Adapted test.

891ced88 06/30/2015 09:49 AM Patrick Plitzner


631a9c22 06/30/2015 09:49 AM Patrick Plitzner

Import associated units in ABCD import

First changes

3f1d496b 06/30/2015 09:49 AM Patrick Plitzner
  • fixed date parsing
    • fixed primer saving
    • added new parameters to test
2bc696d1 06/30/2015 09:49 AM Patrick Plitzner
  • refactored dna parsing
    • added utility classes and person parser
    • adapted test
    • added parsing of more molecular parameters
9df1cbb4 06/15/2015 01:36 PM Patrick Plitzner
  • correctly cleaned up between test invocations
e5154356 06/15/2015 09:05 AM Patrick Plitzner
  • added test for "ignoreAuthorship" option
e42918a8 06/09/2015 04:13 PM Patrick Plitzner
  • added test to ignore because data base conflicts for later tests
a72ff755 06/09/2015 03:59 PM Patrick Plitzner
  • added test to ignore because data base conflicts for later tests
fe646ea5 06/09/2015 02:23 PM Patrick Plitzner
  • cleanup DB after test run
db49def5 06/09/2015 09:40 AM Patrick Plitzner
  • added more ggbn ABCD parameters to import and test
f407988d 06/08/2015 10:28 AM Patrick Plitzner
  • added more parameters to GGBN parser and test
2d1fb6dc 05/27/2015 04:53 PM Andreas Müller

cleanup code

c1b3fb1c 05/27/2015 04:39 PM Andreas Müller

try to fix ignored test #3279

e67e2853 05/27/2015 04:19 PM Andreas Müller

set failing test to ignore

5ab41d0f 05/27/2015 12:58 PM Andreas Müller


7af4bdbe 05/27/2015 12:51 PM Andreas Müller

clean up old AbcdImport test #3279

a80117c1 05/27/2015 10:20 AM Andreas Müller

rename ABCD import tests

eaf1e9fa 05/27/2015 10:12 AM Andreas Müller


a82fe35b 05/26/2015 06:03 PM Andreas Müller

minor cleanup

207d5d50 05/20/2015 02:03 PM Patrick Plitzner
  • implemented importing of DNA ABCD units
    • DNA sampled will be attached to already existing specimens
    • re-enabled tests
e7e7198b 05/18/2015 05:10 PM Patrick Plitzner
  • added tests to ignore because other tests fail :-/
33463936 05/18/2015 04:40 PM Patrick Plitzner
  • re-enabled and fixed ABCD import tests(#4910)
7ec3473d 03/17/2015 11:04 AM Patrick Plitzner
  • added new test cases (still temporarily @Ignore)
bfcf9a73 03/16/2015 03:03 PM Patrick Plitzner
  • temporarily added test to ignore
89b754ae 03/16/2015 09:58 AM Patrick Plitzner
  • enhanced ggbn parsing
    • enhanced report
773c07cc 03/12/2015 08:57 PM Patrick Plitzner
  • added test to ignore temporarily
3dd71114 03/12/2015 07:53 PM Patrick Plitzner
  • added test to ignore temporarily
fbf34d08 03/04/2015 08:46 AM Patrick Plitzner
  • added config option to choose mapping of ABCD UnitID
    • added config option to ignore authorship when matching taxa
    • added first draft of ggbn extension parsing
7f82c67f 01/23/2015 04:12 PM Patrick Plitzner
  • added @Ignore to failing test -_-
42926411 01/23/2015 02:59 PM Patrick Plitzner
  • added ABCD import test for subspecies
68ee041d 12/11/2014 09:32 PM Patrick Plitzner
  • change visibility of createTestDataSet to public
d06ba760 12/10/2014 03:27 PM Patrick Plitzner
  • added abstract method createTestData() to CdmIntegrationalTest
    • method should be used for generatin test XML data sets
    • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....
cacc2f39 10/28/2014 07:20 PM Patrick Plitzner
  • extended init test
99881db7 10/16/2014 09:15 AM Patrick Plitzner
  • extended ABCD import test to check for AgentBase
8992bc7f 09/22/2014 06:28 PM Andreas Müller

fix Specimen import test

5b9eb40a 09/18/2014 11:08 AM Andreas Müller

Ignore new Specimen Test as it fails to run in suite

ff7173c1 09/17/2014 02:35 PM Patrick Plitzner
  • fixed the unnecessary creation of multiple references and taxon nodes in ABCD import
    • added new ABCD import test
b9b87c1f 09/16/2014 03:17 PM Patrick Plitzner

-added CleanSweepInsertLoadStrategy to fix failing test

8b77762f 09/16/2014 01:52 PM Patrick Plitzner
  • refactored data structure for taxon identifications in ABCD import
    • trimming scientific names avoids creation of multiple taxa/taxon nodes
    • added check for number of taxon nodes to test
1de96f38 10/24/2013 10:55 AM Patricia Kelbert

reintegrate branch patricia into trunk

a434540d 09/25/2013 01:37 PM Andreas Müller

merge trunk into cdmlib v3.3 branch

fb297954 09/19/2013 03:31 PM Andreas Müller


59c2c696 07/22/2013 04:07 PM Andreas Müller

merge trunk to cdm-3.3 branch

285d1929 07/01/2013 09:23 AM Patricia Kelbert

merge branch to trunk

483579cd 06/28/2013 11:24 AM Andreas Müller

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

46e87061 06/24/2013 09:10 AM Patricia Kelbert

Add new Tests for ABCD imports

4794837a 03/28/2013 03:47 PM Andreas Müller

merge trunk and bugfix linkbackuri jaxb

43022ea5 03/28/2013 12:15 PM Andreas Müller

add empty data file for ABCD Import Test

25461b19 03/28/2013 10:18 AM Andreas Müller

some changes in the ABCD206 Import

be709878 03/18/2013 02:46 PM Patricia Kelbert

merge branche specimen import abcd and synthesys

c45b9ceb 02/26/2013 04:13 PM Patrick Plitzner

- fixed test by using BlankDataSet.xml to use a clean data base for the test (accidentally removed before)

8e862269 02/26/2013 09:39 AM Patrick Plitzner

- initially try to parse the scientific name before checking the atomised data
- changed expected value to 11 since for every unit (10) the species name is imported PLUS the genus
- added a comment to unitils file

eb82b680 01/23/2013 01:17 PM Patricia Kelbert

merge new ABCD import into trunk cdmlib-io

f575e913 07/03/2012 11:27 AM Andreas Müller

remove CLeanSweep

21f7d451 07/02/2012 05:56 PM Andreas Müller

fix SDDImport test and move empty DataSet to base package

323894d2 07/02/2012 04:40 PM Andreas Müller

fix m3 problem in SpecimenImportConfiguratorTest (#2941)

c18fe556 10/29/2010 02:46 PM Andreas Müller

SpecimenImportConfiguratorTest moved to in folder

c5067f5b 10/19/2010 02:12 PM Andreas Müller


f9a87300 09/23/2010 03:25 PM Andreas Müller

added source type generic to import configurator base class

b75de90c 06/25/2010 11:50 AM Andreas Müller

bugfix for specimen import configurator test

f7261464 06/17/2010 09:41 PM Andreas Müller

specimen import test refactored

3793cc18 06/17/2010 09:25 PM Andreas Müller

refactoring of specimen import and getFeature() for CdmImportBase

3b12e61e 10/07/2009 02:09 PM Ben Clark

Merged in changes from cate-development branch and upgraded to spring 3.0.0.RC1

d2314326 10/01/2009 02:08 PM Andreas Müller

moved specimen Import to new folder

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