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cdmlib / cdmlib-io / src / main / java / eu / etaxonomy / cdm / io / specimen @ 8b77762f

# Date Author Comment
8b77762f 09/16/2014 01:52 PM Patrick Plitzner
  • refactored data structure for taxon identifications in ABCD import
    • trimming scientific names avoids creation of multiple taxa/taxon nodes
    • added check for number of taxon nodes to test
ca8c03d8 09/16/2014 08:48 AM Patrick Plitzner
  • cleaned up code
473f565e 09/16/2014 06:16 AM Patrick Plitzner
  • fixed typo
ee0d5259 09/15/2014 02:14 PM Patrick Plitzner
  • added resetFields() method to avoid NonUniqueObjectExceptions
6db07e78 09/08/2014 03:01 PM Patrick Plitzner
  • fixed possible NPE
5091a21d 09/08/2014 02:10 PM Patrick Plitzner
  • adapted some save method to allow transient services (#3726)
f5b114e4 06/07/2014 11:00 PM Andreas Müller

updates to taxonX import

25f06a8a 06/06/2014 10:52 PM Andreas Müller

better handling of countries in gathering unit

fdf9eec2 05/20/2014 12:11 PM Andreas Müller

better use of generics in service layer and persistence list methods

51049151 05/07/2014 10:24 AM Andreas Müller

adding map to ReferenceSystem

5ed3bb11 04/23/2014 02:49 PM Andreas Müller

fix AccessionNumber->Locality bug in Specimen Excel Import

92131df0 04/17/2014 04:48 PM Andreas Müller

Latest updates to Specimen Excel import

a2b4d1c4 04/17/2014 03:55 PM Andreas Müller

determination abbrev

f379b50b 04/08/2014 12:44 PM Andreas Müller

remove isFigure from getImageMedia

9edf2348 03/27/2014 03:27 PM Patricia Kelbert

debug collection and institution for excel import

c4a8a286 03/14/2014 09:46 PM Andreas Müller

latest changes to Specimen Excel Import

fbf3b7d2 02/19/2014 03:33 PM Patrick Plitzner
  • replaced saveOrUpdate() with "bundle" method save()
6e861bce 02/14/2014 05:37 PM Andreas Müller

make description.setTaxon protected and cleanup cyprus altitudes and destinations

0092a4a5 02/13/2014 12:25 PM Cherian Mathew

reverting back the cdm application configuration refatoring

086dcd26 02/12/2014 03:10 PM Cherian Mathew

renaming ICdmApplicationConfiguration to ICdmApplicationDefaultConfiguration

816af8a7 01/13/2014 05:48 PM Andreas Müller

NPE bugfix in Specimen import

fd1ce664 11/07/2013 11:41 AM Patricia Kelbert

reintegrate ABCD import improvements

6490c596 11/06/2013 05:18 PM Patricia Kelbert

update abcd import

41ba5f3f 11/05/2013 04:26 PM Patricia Kelbert

reintegrate branch into trunk for ABCD popups

9196930e 11/05/2013 08:55 AM Patricia Kelbert

reintegrate abcd

6d5513e4 10/30/2013 11:51 PM Andreas Müller

fix not running ABCD import test, still needs further fixing for OriginalSource handling

cb82395b 10/30/2013 05:00 PM Patricia Kelbert

merge branch io into trunk for ABCD import

8809a122 10/29/2013 03:10 PM Patricia Kelbert

reintegrate io branch into trunk

cad8bfe4 10/29/2013 02:43 PM Patricia Kelbert

merge patricia branch into trunk for cdmlib-io

1de96f38 10/24/2013 10:55 AM Patricia Kelbert

reintegrate branch patricia into trunk

64c9b080 09/19/2013 03:33 PM Andreas Müller

fix ABCD import

f96df645 09/19/2013 01:34 PM Andreas Müller

refactor Abcd import so that save can be handled separately, not yet complete

15348b34 09/07/2013 02:37 AM Andreas Müller

Change WaterbodyOrCountry name to Country #3700

ee1ce884 09/03/2013 03:26 PM Andreas Müller

rename getRankByAbbrev methods to getRankByIdInVoc #3479

9e3239f6 08/09/2013 04:49 PM Andreas Müller

Update script for termtype and some other, remove InstitutionType and COntinent, update idInVocabulary, ...

136e16b1 07/22/2013 04:47 PM Andreas Müller

merge trunk to branch cdm-3.3

59c2c696 07/22/2013 04:07 PM Andreas Müller

merge trunk to cdm-3.3 branch

3a1cd9fb 07/14/2013 08:29 PM Andreas Müller

devided TimePeriod and TimePeriodParser #3617

efdb6847 07/03/2013 12:09 AM Andreas Müller

implement sortIndex for TaxonNode and remove usedSynonym from addChildNode methods (#3508)

9483fdc5 07/01/2013 09:46 AM Patricia Kelbert

repair trunk cdmlib io taxonx

285d1929 07/01/2013 09:23 AM Patricia Kelbert

merge branch to trunk

289d49ad 06/28/2013 02:05 PM Andreas Müller

move DescriptionElementSource to description package #2345

c150ee7f 06/28/2013 12:59 PM Andreas Müller

rename FieldObservation -> FieldUnit #3351

483579cd 06/28/2013 11:24 AM Andreas Müller

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

1d3f5c87 06/24/2013 09:15 AM Patricia Kelbert

debug ABCD import
new boolean names in configurator
new class for User Interaction

812af3d0 06/24/2013 09:15 AM Patricia Kelbert

debug ABCD import
new boolean names in configurator
new class for User Interaction

1eed2be4 06/21/2013 12:43 PM Andreas Müller

merge trunk to 3.3

33d523d0 06/19/2013 08:52 AM Patricia Kelbert

debug ABCD import, add TaxonNode was missing for the relation parent-child

fad74844 06/06/2013 04:17 PM Andreas Müller

update factory methods for original sources #1549

9f840a1e 06/06/2013 01:52 PM Andreas Müller

Merge trunk into CDM 3.3

742459f7 06/06/2013 01:34 AM Andreas Müller

change ICBN to ICNAFP #2864

753c5dd1 05/17/2013 02:23 PM Andreas Müller


e807de61 05/13/2013 08:05 PM Andreas Müller

remove commented code

77b42a74 04/23/2013 04:22 PM Andreas Müller

update ReferenceFactory method

672a8ea9 03/31/2013 03:19 AM Andreas Müller

fix all Specimen test including new implementation for hibernate listeners

380af210 03/28/2013 07:53 PM Andreas Müller

bugfixes for Specimen imports

4794837a 03/28/2013 03:47 PM Andreas Müller

merge trunk and bugfix linkbackuri jaxb

6e0656ea 03/28/2013 12:13 PM Andreas Müller

latest fixes to ABCD206 Import

25461b19 03/28/2013 10:18 AM Andreas Müller

some changes in the ABCD206 Import

be709878 03/18/2013 02:46 PM Patricia Kelbert

merge branche specimen import abcd and synthesys

fa28b537 02/26/2013 05:59 PM Patrick Plitzner

- re-formatted code
- extracted strings to global constants
- cleaned up comments

8e862269 02/26/2013 09:39 AM Patrick Plitzner

- initially try to parse the scientific name before checking the atomised data
- changed expected value to 11 since for every unit (10) the species name is imported PLUS the genus
- added a comment to unitils file

458afbcd 02/08/2013 06:37 PM Andreas Kohlbecker

fixing another problem of ABCD import

17caea1e 01/23/2013 02:55 PM Patricia Kelbert

it solves the missing-link between SpecimenObservation and the Taxon(Determinations) determinationEvent.setIdentifiedUnit(derivedUnitBase); was missing in the code

10283ca7 01/23/2013 02:16 PM Patricia Kelbert

debug abcd import due to failed merge..

aec11d72 01/23/2013 01:19 PM Patricia Kelbert

add missing Abcd class after merging branch and trunk

eb82b680 01/23/2013 01:17 PM Patricia Kelbert

merge new ABCD import into trunk cdmlib-io

0aef9624 12/18/2012 10:24 AM Andreas Kohlbecker

reverting: r16792 (merging of debugged ABCD import into the trunk)

87df87f9 12/17/2012 10:23 AM Patricia Kelbert

merging of debugged ABCD import into the trunk

e6dfeddd 07/04/2012 10:47 PM Andreas Müller

updating io test, only test not running currently are ExcelSpecimen.testResultSet (error in test) and Endnote import (error in import)

5437bb83 07/03/2012 08:03 PM Andreas Müller

fix ExcelSpecimenImportExampleTest, also running in maven

2789e579 07/03/2012 07:12 PM Andreas Müller


16879321 07/03/2012 02:23 PM Andreas Müller

fixing synthesys excel specimen import test

67849ed5 10/26/2011 06:06 PM Andreas Müller

improvements to specimen import #2662

47fdce61 08/10/2011 04:57 PM Andreas Müller

refactor getImageMedia() to support figures

51171c9d 07/20/2011 04:27 PM Andreas Müller

last updates for Taxon Excel Import and moving all success variables to state

3b8a0b9a 07/19/2011 03:38 PM Andreas Müller

Some refactoring for Excel import. No new features

c84013f1 07/14/2011 03:56 PM Andreas Müller

move base column handling to base class (Excel import)

29120251 07/14/2011 03:19 PM Andreas Müller

further refactoring to make Excel imports more generic

f3469d87 07/13/2011 11:25 PM Andreas Müller

Refactoring Excel Import

f26ddad7 07/05/2011 01:05 PM Katja Luther

quick fix of tests, save() is not secured at the moment, because for tests it is needed to save objects to the database without authentication.

7439328d 06/28/2011 11:37 AM Andreas Müller

remove imports

1a457f62 06/23/2011 04:19 PM Niels Hoffmann


370503cf 06/08/2011 03:16 PM Niels Hoffmann

Refactored MediaMetaData and family. Renamed it to MediaInfo. API is now less confusing and more consistent.

0c9886de 05/27/2011 05:05 PM Andreas Müller

area matching in specimen import

32e64177 05/27/2011 02:53 PM Andreas Müller

TermMatchMode for named area imports

60925464 05/27/2011 01:28 AM Andreas Müller

newest development for specimen import (e.g. RefSystem)

976e5fd3 05/24/2011 04:23 PM Andreas Müller

newest development for specimen import

e5cacaa2 05/24/2011 03:02 PM Andreas Müller

named areas for specimen

f412ade2 05/24/2011 11:48 AM Andreas Müller

newest developments for specimen import (e.g. area levels)

f5fe8846 05/23/2011 06:27 PM Andreas Müller

newest developments in specimen import

7394598e 05/23/2011 11:37 AM Andreas Müller

minor (logging)

0a3e500e 05/20/2011 04:54 PM Andreas Müller

latest development for specimen import

fe021b01 05/20/2011 11:43 AM Andreas Müller

latest development for specimen import

49a15a79 05/11/2011 01:20 PM Andreas Müller

first part of implementation for CDM Specimen import

91a9471d 05/04/2011 04:59 PM Andreas Müller

make collector number deprecated in DerivedUnitBase and remove from specimen facade and ABCD import and REST services(#2362)

ebf7bac5 05/02/2011 04:00 PM Andreas Müller


a0f6ea74 04/09/2011 10:47 AM Andreas Müller

first steps for specimen import

d6557e6d 04/05/2011 10:51 AM Andreas Müller

Renaming Specimen Excel Import (state)

fb54c084 04/05/2011 10:50 AM Andreas Müller

Renaming Specimen Excel Import

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