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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.UUID;
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import org.apache.logging.log4j.LogManager;
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import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.common.ResultWrapper;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.RankClass;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.model.term.OrderedTermVocabulary;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
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/**
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* @author a.mueller
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* @since 20.03.2008
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*/
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public class BerlinModelTransformer {
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private static final Logger logger = LogManager.getLogger();
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//source Refs
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public static final UUID uuidSourceRefEuroMed = UUID.fromString("0603a84a-f024-4454-ab92-9e2ac0139126");
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//named areas
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public static UUID euroMedUuid = UUID.fromString("111bdf38-7a32-440a-9808-8af1c9e54b51");
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public static UUID uuidEasternEuropeanRussia = UUID.fromString("3f013375-0e0a-40c3-8a14-84c0535fab40");
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public static UUID uuidSerbiaMontenegro = UUID.fromString("8926dbe6-863e-47a9-98a0-7dc9ed2c57f7");
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public static UUID uuidSerbia = UUID.fromString("4ffed197-3d7e-4cd9-8984-e64b8dee9512");
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public static UUID uuidLebanonSyria = UUID.fromString("0c45f250-99da-4b19-aa89-c3e56cfdf103");
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public static UUID uuidUssr = UUID.fromString("a512e00a-45f3-4be5-82fa-bba8d675696f");
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public static UUID uuidSicilyMalta = UUID.fromString("424d81ee-d272-4ae8-9600-0a334049cd72");
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public static UUID uuidDesertas = UUID.fromString("36f5e93e-34e8-45b5-a401-f0e0faad21cf");
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public static UUID uuidMadeira = UUID.fromString("086e27ee-78ff-4236-aca9-9850850cd355");
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public static UUID uuidPortoSanto = UUID.fromString("1f9ab6a0-a402-4dfe-8c5b-b1844eb4d8e5");
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//azores
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public static UUID uuidFlores = UUID.fromString("ef0067c2-8bbb-4e37-8462-97b03f51ba43");
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public static UUID uuidCorvo = UUID.fromString("b1e6117c-2be1-43a3-9233-227dd90bdee9");
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public static UUID uuidFaial = UUID.fromString("14f6dcdb-6524-4700-b80c-66424952ef2b");
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public static UUID uuidGraciosa = UUID.fromString("05f93a7b-d813-4833-864f-eedbba747133");
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public static UUID uuidSaoJorge = UUID.fromString("578e0ecd-b5e3-4c87-8ecc-0fc4c7e217d9");
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public static UUID uuidSaoMiguel = UUID.fromString("0e2f6ad8-7afb-4f01-b134-4f71991e877a");
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public static UUID uuidPico = UUID.fromString("98cc566f-4110-43d5-830f-68436a009f49");
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public static UUID uuidSantaMaria = UUID.fromString("bd5e5d4a-22b7-41aa-8e58-1d1d73a9954d");
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public static UUID uuidTerceira = UUID.fromString("6fc257c0-a131-41f0-b6c3-51ef9c4fa962");
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//Canyry islands
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public static UUID uuidGranCanaria = UUID.fromString("a0240c35-0e05-4157-8321-67ba8e31fdb9");
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public static UUID uuidFuerteventura = UUID.fromString("549ce2c1-6d49-4bf3-b75d-cf3f4b5a1398");
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public static UUID uuidGomera = UUID.fromString("895fab09-7478-4210-b42a-423d23c6f85e");
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public static UUID uuidHierro = UUID.fromString("d137b6a5-31bc-418c-9403-f042017dc04b");
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public static UUID uuidLanzaroteWithGraciosa = UUID.fromString("c9b08dc1-f301-4d9d-b447-b8744602c776");
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public static UUID uuidLaPalma = UUID.fromString("fdb3f2b2-f154-4f04-9f31-240a47a0e780");
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public static UUID uuidTenerife = UUID.fromString("73658c7e-a568-465e-bd84-4554fc93ca56");
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//Baleares
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public static UUID uuidIbizaWithFormentera = UUID.fromString("1cda2a33-3469-49d5-8e77-cb5451110519");
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public static UUID uuidMallorca = UUID.fromString("a10cba04-b4b5-4a4b-b69a-fcd4b3916fec");
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public static UUID uuidMenorca = UUID.fromString("9f6ede48-27f8-4270-bf4e-c97eaa86aab7");
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//russia
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public static UUID uuidRussiaNorthern = UUID.fromString("c23bc1c9-a775-4426-b883-07d4d7d47eed");
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public static UUID uuidRussiaBaltic = UUID.fromString("579dad44-9439-4b19-8716-ab90d8f27944");
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public static UUID uuidRussiaCentral = UUID.fromString("8bbc8c6a-2ef2-4024-ad51-66fe34c70092");
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public static UUID uuidRussiaSouthWest = UUID.fromString("daa5c207-5567-4690-8742-5e4d153b6a64");
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public static UUID uuidRussiaSouthEast = UUID.fromString("e8516598-b529-489e-9ee8-63bbbd295c1b");
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public static UUID uuidEastAegeanIslands = UUID.fromString("1c429593-c493-46e6-971a-0d70be690da8");
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public static UUID uuidTurkishEastAegeanIslands = UUID.fromString("ba35dba3-ac70-41ae-81c2-2070943f44f2");
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public static UUID uuidBalticStates = UUID.fromString("bf9d64f6-3183-4fa5-8e90-73090e7a2282");
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public static UUID uuidTurkey = UUID.fromString("d344ee2c-14c8-438d-b03d-11538edb1268");
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public static UUID uuidCaucasia = UUID.fromString("ebfd3fd1-3859-4e5e-95c7-f66010599d7e");
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//E+M common name areas
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public static UUID uuidVocEuroMedCommonNameAreas = UUID.fromString("aff33e27-41b0-40a3-a07e-c674213e971f");
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public static UUID uuidEMAreaCommonNameAlbania = UUID.fromString("0e79622b-07ad-44f0-b518-c799b113117f");
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public static UUID uuidEMAreaCommonNameAndorra = UUID.fromString("7a7b5692-e94a-4535-bb98-3177ce9c6c6f");
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public static UUID uuidEMAreaCommonNameArmenia = UUID.fromString("3d0fa3da-eafd-4a68-bdb7-2ca874436d00");
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public static UUID uuidEMAreaCommonNameAustria = UUID.fromString("675c0eb1-715d-42b2-98e3-4205b22893ef");
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public static UUID uuidEMAreaCommonNameAzerbaijan = UUID.fromString("48b9c57e-a089-4ca5-8171-6560f006c088");
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public static UUID uuidEMAreaCommonNameAzores = UUID.fromString("14eeaacf-aa01-4cf1-ae4d-6b9d0541bb51");
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public static UUID uuidEMAreaCommonNameBaleares = UUID.fromString("e772bae3-2950-45b3-866e-3f34a1baaf8d");
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public static UUID uuidEMAreaCommonNameBelarus = UUID.fromString("b751b9b2-d8b0-412f-b8b4-aa4c2b750563");
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public static UUID uuidEMAreaCommonNameBelgium = UUID.fromString("a0c709cf-9f0e-4cbc-b15e-37c0dad72e67");
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public static UUID uuidEMAreaCommonNameBulgaria = UUID.fromString("78a5d158-5770-47e4-b16f-ef171d75117a");
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public static UUID uuidEMAreaCommonNameCanaryIs = UUID.fromString("1263a706-b4dc-4c78-9799-265db9aef08c");
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public static UUID uuidEMAreaCommonNameCorse = UUID.fromString("b61abf50-6bc3-4a00-a14c-62dac001590d");
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public static UUID uuidEMAreaCommonNameCrete = UUID.fromString("fa7d968e-8924-4a9a-b875-73cba3ecb5db");
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public static UUID uuidEMAreaCommonNameCrimea = UUID.fromString("32480a59-2803-4444-83a3-1a505242ec69");
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public static UUID uuidEMAreaCommonNameCroatia = UUID.fromString("28cf3bce-c621-4624-ab31-0c344e347608");
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public static UUID uuidEMAreaCommonNameCzechRepublic = UUID.fromString("1630e820-82e8-4ea1-b233-733db0ecaa9f");
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public static UUID uuidEMAreaCommonNameDenmark = UUID.fromString("e7cea4f8-b59b-4716-b79a-5cc452ef6c72");
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public static UUID uuidEMAreaCommonNameEastAegeanIslands = UUID.fromString("4b4ecaad-8337-4db8-9955-a0757462db33");
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public static UUID uuidEMAreaCommonNameEstonia = UUID.fromString("37b8726e-8fd7-4bb7-b628-f6203b47a412");
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public static UUID uuidEMAreaCommonNameFaroer = UUID.fromString("acc4cffd-bc29-4f40-9dc5-8ba3339c26ed");
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public static UUID uuidEMAreaCommonNameFinland = UUID.fromString("31e10b9b-bdd8-486c-86e0-6768318540b4");
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public static UUID uuidEMAreaCommonNameFinlandWithAhvenanmaa = UUID.fromString("30ddc63b-45b1-4b58-b536-22e700e84dca");
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public static UUID uuidEMAreaCommonNameFrance = UUID.fromString("b63ca9b8-6840-4789-a300-825104d8dda6");
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public static UUID uuidEMAreaCommonNameGeorgia = UUID.fromString("97e1cdf6-7e6e-48de-915e-0f90421deb0d");
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public static UUID uuidEMAreaCommonNameGermany = UUID.fromString("49f6e579-885f-452a-a160-dfa0a123bd0d");
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public static UUID uuidEMAreaCommonNameGreatBritain = UUID.fromString("679a5679-381e-417b-a7e6-20af3345aa46");
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public static UUID uuidEMAreaCommonNameGreece = UUID.fromString("f1c4c5c2-da4a-4cd7-9b1f-e4cb72a82ce4");
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public static UUID uuidEMAreaCommonNameHungary = UUID.fromString("848c2b14-8b4d-483c-9d35-600fc19065e8");
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public static UUID uuidEMAreaCommonNameIbizaWithFormentera = UUID.fromString("a3dadbc6-11b3-4df2-9794-f92fbc458fd0");
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public static UUID uuidEMAreaCommonNameIceland = UUID.fromString("95863923-79cc-4bb6-a475-69b99978599a");
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public static UUID uuidEMAreaCommonNameIreland = UUID.fromString("2890c6cb-838f-4e7a-8823-4267dea4a4a1");
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public static UUID uuidEMAreaCommonNameIsrael = UUID.fromString("9cfb7aed-a00d-44e2-b052-92b9f61c061e");
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public static UUID uuidEMAreaCommonNameItaly = UUID.fromString("ca77b4d1-057c-4254-bf79-11cfbc220e09");
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public static UUID uuidEMAreaCommonNameLaPalma = UUID.fromString("8e6a84ca-2b77-43e8-ad5d-0790902e0a6c");
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public static UUID uuidEMAreaCommonNameLativa = UUID.fromString("9b55b5af-3530-4937-a4af-4faa40fe168f");
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public static UUID uuidEMAreaCommonNameLebanon = UUID.fromString("b8f021e6-9b46-4637-9aee-4b3e1489813a");
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public static UUID uuidEMAreaCommonNameLibya = UUID.fromString("0dc1a7a7-324e-48ed-a317-ffcb816749cc");
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public static UUID uuidEMAreaCommonNameLithuania = UUID.fromString("a110eab7-c0e8-4f6c-8e53-4c616e896dfe");
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public static UUID uuidEMAreaCommonNameMadeira = UUID.fromString("ecefeda2-7d8c-4921-9610-5a23aa3b291d");
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public static UUID uuidEMAreaCommonNameMallorca = UUID.fromString("b55a484b-faaf-4077-a76d-e24ec3841e70");
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public static UUID uuidEMAreaCommonNameMalta = UUID.fromString("6d3e211a-f8be-4e2a-9933-5f50bea7e4a6");
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public static UUID uuidEMAreaCommonNameMenorca = UUID.fromString("bb57089f-3d95-4c74-98ec-54508b8c8f3c");
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public static UUID uuidEMAreaCommonNameMoldova = UUID.fromString("51d8c588-a0aa-4586-9e89-3db43c6f857b");
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public static UUID uuidEMAreaCommonNameMorocco = UUID.fromString("0ce657e5-a7d8-4bfb-a099-5e459eb42520");
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public static UUID uuidEMAreaCommonNameNetherlands = UUID.fromString("5d6c22cd-a2e5-401b-97b0-41f06febe6d1");
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public static UUID uuidEMAreaCommonNameNorway = UUID.fromString("fea24b9c-20d6-4d45-9459-273d13063f4b");
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public static UUID uuidEMAreaCommonNamePoland = UUID.fromString("27f8e6f0-7547-4923-818d-a33943f9f94d");
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public static UUID uuidEMAreaCommonNamePortugal = UUID.fromString("7374ded9-9159-4862-bb1b-e88b270f3a8b");
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public static UUID uuidEMAreaCommonNameRomania = UUID.fromString("3162d5ee-9fc2-4215-acc9-9e22a5a76b40");
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public static UUID uuidEMAreaCommonNameRussiaCentral = UUID.fromString("12e08af4-7c33-49d8-a36f-8992480870b1");
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public static UUID uuidEMAreaCommonNameRussianFederation = UUID.fromString("21796f6f-cbbf-4b5c-90e4-93c790cd9a68");
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public static UUID uuidEMAreaCommonNameSardegna = UUID.fromString("d9f5934e-357b-477d-b8d5-1d719a2a8146");
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public static UUID uuidEMAreaCommonNameSerbiaMontenegro = UUID.fromString("c71b5bff-93b1-40d3-a4c9-e7fb9b5d7778");
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public static UUID uuidEMAreaCommonNameSlovakia = UUID.fromString("e9948c7c-1a2b-48a2-9744-c4609f8ba829");
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public static UUID uuidEMAreaCommonNameSlovenia = UUID.fromString("960d01d2-e3ae-4931-b738-6835420f25aa");
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public static UUID uuidEMAreaCommonNameSouthEuropeanRussia = UUID.fromString("0aedc386-db44-4b2d-9897-1694b0344035");
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public static UUID uuidEMAreaCommonNameSpain = UUID.fromString("e512a268-02a7-4c65-a431-264c7349fd39");
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public static UUID uuidEMAreaCommonNameSweden = UUID.fromString("8cb32914-6c23-4f6a-a26f-47cc9da0a65a");
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public static UUID uuidEMAreaCommonNameSwitzerland = UUID.fromString("20cebdad-5ac2-47fb-94d3-6eaac7242001");
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public static UUID uuidEMAreaCommonNameSyria = UUID.fromString("a09866fc-07d0-49c7-b7ca-70c03e6126c8");
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public static UUID uuidEMAreaCommonNameTenerife = UUID.fromString("18569798-b177-4210-8bcc-3c762d82ed3d");
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public static UUID uuidEMAreaCommonNameTurkey = UUID.fromString("7259bdc6-f07f-4501-afe3-3e863bc14188");
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public static UUID uuidEMAreaCommonNameUkraine = UUID.fromString("8d1622b9-02e5-4001-b8da-8ad9e6d2d0b6");
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public static UUID uuidEMAreaCommonNameWales = UUID.fromString("f66ce4c2-2a1a-43cb-aff7-1776768f725f");
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//E+M areas
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public static UUID uuidVocEuroMedAreas = UUID.fromString("625a4962-c211-4597-816e-5804083efe26");
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public static UUID uuidEM = UUID.fromString("111BDF38-7A32-440A-9808-8AF1C9E54B51");
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public static UUID uuidEUR = UUID.fromString("80B3CEEE-2F78-45CE-B4F4-E473F5ED8343");
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public static UUID uuid14 = UUID.fromString("4FF83A35-97DE-4C39-BEDE-27EE9ECEFB45");
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public static UUID uuid20 = UUID.fromString("19D93AD1-59E7-49ED-B513-D7D493EDC4DE");
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public static UUID uuid21 = UUID.fromString("1B98DAF0-A709-4871-9A8B-CFDD09F41763");
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public static UUID uuid33 = UUID.fromString("6B719260-1E48-4D85-8BC3-320852E1B331");
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public static UUID uuidDa = UUID.fromString("867871C9-9931-47D0-AEF7-468B9519EBB2");
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public static UUID uuidFe = UUID.fromString("C4EF26AF-11E0-4888-9FC3-5E56F4422BB4");
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public static UUID uuidFa = UUID.fromString("70426E7E-2EAA-4987-95FB-5CB6E56980F3");
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public static UUID uuidBr = UUID.fromString("A22329C4-0B81-4E00-BCC3-2F44A6CA56D0");
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public static UUID uuidIs = UUID.fromString("3D2950E9-C2FD-462E-9697-DCB7241D514E");
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180
|
public static UUID uuidHb = UUID.fromString("65E405E7-B3D4-44B6-BE67-4881582EA274");
|
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181
|
public static UUID uuidNo = UUID.fromString("2D3F1181-6838-4034-96CB-F254A558572A");
|
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182
|
public static UUID uuidSb = UUID.fromString("BC847AF8-30C3-48B2-A881-2B2DEAC0A137");
|
|
183
|
public static UUID uuidSu = UUID.fromString("F064AB9F-EDDB-47D8-8E54-B9E8AD19111D");
|
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184
|
public static UUID uuidAu = UUID.fromString("37C77C23-9673-4ABC-87C2-B29E9FA87FA8");
|
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185
|
public static UUID uuidBe = UUID.fromString("4840373B-F949-4630-B655-9B37F845CFDA");
|
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186
|
public static UUID uuidCz = UUID.fromString("02E67A70-C192-4A01-A311-99F8C42F9D51");
|
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187
|
public static UUID uuidGe = UUID.fromString("F617DDEA-51C9-4EF1-B7F4-ED22F871631D");
|
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188
|
public static UUID uuidHu = UUID.fromString("AD7EDDB1-C089-436F-88BA-BC9115BBD6E0");
|
|
189
|
public static UUID uuidHo = UUID.fromString("00B8FE6D-D04B-4CAC-ADCE-32B44ABB385A");
|
|
190
|
public static UUID uuidPo = UUID.fromString("F23864DF-DFD6-4ABC-B7D0-FD97408AE0A9");
|
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191
|
public static UUID uuidHe = UUID.fromString("7C28D878-F16D-4043-A94E-750BEF910064");
|
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192
|
public static UUID uuidBl = UUID.fromString("A4326211-3219-4655-83AD-599D635DB638");
|
|
193
|
public static UUID uuidCo = UUID.fromString("3EE3CB3E-23DE-491F-94DF-35DB7A1D3AC0");
|
|
194
|
public static UUID uuidGa = UUID.fromString("28591C04-60E3-432A-9D05-CBC945462D2E");
|
|
195
|
public static UUID uuidLu = UUID.fromString("205512B0-AA22-4041-B92B-336FEB79FA4F");
|
|
196
|
public static UUID uuidSa = UUID.fromString("11368A92-2362-4029-A26A-E35CEC0798C1");
|
|
197
|
public static UUID uuidHs = UUID.fromString("6AD92C01-1442-4F2F-BD58-F73075B26C27");
|
|
198
|
public static UUID uuidAl = UUID.fromString("635B63DA-0AAF-446C-843E-BEB52E2A1B90");
|
|
199
|
public static UUID uuidBu = UUID.fromString("75F3CF66-B272-464E-9B1E-35B8E511936D");
|
|
200
|
public static UUID uuidGr = UUID.fromString("34DF8B89-7DFA-4265-9A3E-D540DB72AA77");
|
|
201
|
public static UUID uuidIt = UUID.fromString("06B8F41D-B9A8-4B55-8AAB-DE90EB3D0A9C");
|
|
202
|
public static UUID uuidCr = UUID.fromString("20A8A822-1C87-43F0-A5EF-2AF1CC5DC0FC");
|
|
203
|
public static UUID uuidRm = UUID.fromString("EAB29D40-E3B2-4920-BB1F-8757DFBC9E86");
|
|
204
|
public static UUID uuidSi_S = UUID.fromString("DD861671-930F-4C9E-92D8-EADDC28EB6B7");
|
|
205
|
public static UUID uuidTu_E = UUID.fromString("2B732609-55DB-4F25-BC73-618FFF515ADC");
|
|
206
|
public static UUID uuidJu = UUID.fromString("BD5E6833-7E0E-41A8-83D6-149A31F2CE05");
|
|
207
|
public static UUID uuidUk_K = UUID.fromString("40B7219D-E38C-44EB-9877-E311A2734022");
|
|
208
|
public static UUID uuidUk = UUID.fromString("7A8DF5D0-3D18-4386-891E-96E11BDB6FEB");
|
|
209
|
public static UUID uuidAg = UUID.fromString("548E583C-DBE7-463F-A01B-2A966F2B32D2");
|
|
210
|
public static UUID uuidEg = UUID.fromString("9EDDDE2E-95B7-4443-89A8-C30D031E16A5");
|
|
211
|
public static UUID uuidLi = UUID.fromString("2F506902-2A56-40C8-84CB-B436C84ED258");
|
|
212
|
public static UUID uuidMa = UUID.fromString("D639A7AC-F873-414E-8869-73D10B9CF842");
|
|
213
|
public static UUID uuidTn = UUID.fromString("AF4D86D4-2CA0-48A2-BA15-0D74454D1EAD");
|
|
214
|
public static UUID uuidAz = UUID.fromString("CEC2EBD3-DFD0-4CE6-827F-BFF8FBAF5283");
|
|
215
|
public static UUID uuidSg = UUID.fromString("BC4A0307-B81A-4233-B8BD-EFB9CEDFD530");
|
|
216
|
public static UUID uuidAb = UUID.fromString("D3744C2D-2777-4E85-98BF-04D2FD589EBF");
|
|
217
|
public static UUID uuidAr = UUID.fromString("535FED1E-3EC9-4563-AF55-E753AEFCFBFE");
|
|
218
|
public static UUID uuidAb_A = UUID.fromString("0F4C98BF-AF7B-4CDA-B62C-AD6A1909BFA0");
|
|
219
|
public static UUID uuidGg = UUID.fromString("DA1CCDA8-5867-4098-A709-100A66E2150A");
|
|
220
|
public static UUID uuidAb_N = UUID.fromString("AA75B0CA-49C9-4F8E-8CC2-2A343EB2FFF4");
|
|
221
|
public static UUID uuidCy = UUID.fromString("36EFDF69-09C0-4160-A502-9EEFBC22A984");
|
|
222
|
public static UUID uuidAE_G = UUID.fromString("76F5F3F6-9C3E-47F5-8E85-55360C50273C");
|
|
223
|
public static UUID uuidLe = UUID.fromString("639F5D97-EC9E-4EE2-ADFC-DFF73F7CC970");
|
|
224
|
public static UUID uuidSn = UUID.fromString("5D8E0B00-96CE-4ACC-AF02-62A1B9866144");
|
|
225
|
public static UUID uuidTu_A = UUID.fromString("F7B59D79-15C2-47C9-91B0-DEC1F388CB62");
|
|
226
|
public static UUID uuidTu = UUID.fromString("DB98809B-EF22-413B-B1EA-A79C4E1C4903");
|
|
227
|
public static UUID uuidAu_A = UUID.fromString("AE65867C-00F6-406C-A315-B3E4CC9A93D2");
|
|
228
|
public static UUID uuidAu_L = UUID.fromString("78146B6E-E71A-46DA-8DBC-244CC648BBE7");
|
|
229
|
public static UUID uuidAz_C = UUID.fromString("D35B8259-CC76-4FB0-AFC0-6A23D657EE3E");
|
|
230
|
public static UUID uuidAz_F = UUID.fromString("0F8F470D-CA2A-4130-842A-0A0C6912A123");
|
|
231
|
public static UUID uuidAz_G = UUID.fromString("CFF9FC6D-E3B2-45B1-87A9-6FEFB029A12F");
|
|
232
|
public static UUID uuidAz_P = UUID.fromString("C8000982-19E8-492E-912D-59EB370E52C0");
|
|
233
|
public static UUID uuidAz_S = UUID.fromString("BD852931-47B3-466C-A422-4F312B913CA2");
|
|
234
|
public static UUID uuidAz_J = UUID.fromString("4A5CED9F-F078-44B3-94BF-F3EE79315236");
|
|
235
|
public static UUID uuidAz_M = UUID.fromString("B8C76F37-6483-474F-85AB-96399219DE57");
|
|
236
|
public static UUID uuidAz_T = UUID.fromString("7A52595F-DA5E-440A-B2BD-F63999CE979E");
|
|
237
|
public static UUID uuidBe_B = UUID.fromString("9E263401-ACEC-4E2E-AA89-4AAF56AE7180");
|
|
238
|
public static UUID uuidBe_L = UUID.fromString("AF71559C-7765-493C-8C9A-1248DFF28789");
|
|
239
|
public static UUID uuidBl_I = UUID.fromString("121B07A0-8031-4F22-B9B7-C334FC3204CE");
|
|
240
|
public static UUID uuidBl_M = UUID.fromString("E8E8EFDC-E9EB-4B26-9711-F986265AD114");
|
|
241
|
public static UUID uuidBl_N = UUID.fromString("D96DD8A7-4BD8-4ADF-8CDB-05873686DB1A");
|
|
242
|
public static UUID uuidBH = UUID.fromString("6A109EF5-3AC1-4C59-8599-08F944ABA499");
|
|
243
|
public static UUID uuidBy = UUID.fromString("5D972AF7-6AE2-44D1-840B-EDB1DBE8B7AC");
|
|
244
|
public static UUID uuidCa = UUID.fromString("CFA26682-B0AB-4FEB-9191-6AA098638382");
|
|
245
|
public static UUID uuidCa_F = UUID.fromString("0D8ED2C4-0313-464C-A5B4-EC0A52E45ADF");
|
|
246
|
public static UUID uuidCa_G = UUID.fromString("865D1319-B157-4D1A-BBF0-F56B7EB2ED96");
|
|
247
|
public static UUID uuidCa_C = UUID.fromString("486FCBED-84C4-4673-8724-9A8A4A6613AD");
|
|
248
|
public static UUID uuidCa_H = UUID.fromString("0B57C693-DB09-4D7F-9FA9-0DBBEFF3B3B6");
|
|
249
|
public static UUID uuidCa_L = UUID.fromString("A88D6DF4-7924-4BEC-BFA6-071BDA82A4B3");
|
|
250
|
public static UUID uuidCa_P = UUID.fromString("BBF04D1A-1FC0-4A7B-BF0B-7D7BF69D8392");
|
|
251
|
public static UUID uuidCa_T = UUID.fromString("BBAD170B-285D-4BEA-8C3F-C43894FB75FF");
|
|
252
|
public static UUID uuidCs = UUID.fromString("2ADA45F0-C7CC-4026-A8B1-B816971F0753");
|
|
253
|
public static UUID uuidCt = UUID.fromString("09B5728A-4775-4530-B362-9B1EF4A9E8C3");
|
|
254
|
public static UUID uuidEs = UUID.fromString("1011D427-401B-47EE-A42C-4C1698957D55");
|
|
255
|
public static UUID uuidGa_C = UUID.fromString("3653A4DC-1ADE-4237-A62C-4F0AC11E576F");
|
|
256
|
public static UUID uuidGa_F = UUID.fromString("860F92B6-5CDA-456B-964C-6162D1D08161");
|
|
257
|
public static UUID uuidGg_A = UUID.fromString("5FAD859B-7929-4D5F-B92C-95E3E0469BB2");
|
|
258
|
public static UUID uuidGg_D = UUID.fromString("6091C975-B946-4EF3-A18F-2E148EAE6A06");
|
|
259
|
public static UUID uuidGg_G = UUID.fromString("048799B0-D7B9-44C6-B2D1-5CA2A49FA175");
|
|
260
|
public static UUID uuidHs_A = UUID.fromString("EAED6C21-42E5-496D-B43E-C121F96FA672");
|
|
261
|
public static UUID uuidHs_G = UUID.fromString("35350D75-6952-48BD-B265-C005BC1B2909");
|
|
262
|
public static UUID uuidHs_S = UUID.fromString("264649F7-192D-4AE5-9840-81FC782F59F0");
|
|
263
|
public static UUID uuidIr = UUID.fromString("A3B35528-5FFD-43B1-B605-711807C1EC9F");
|
|
264
|
public static UUID uuidIt_I = UUID.fromString("E3BC327E-0B42-4439-811B-595BC55A8FF8");
|
|
265
|
public static UUID uuidIt_S = UUID.fromString("57F35807-8CFA-4698-BB04-AAD3549C12EB");
|
|
266
|
public static UUID uuidJo = UUID.fromString("567A537D-F2FA-43EF-A20A-AEC76723E269");
|
|
267
|
public static UUID uuidKz = UUID.fromString("F8ABE715-D859-4B6F-B8F1-DB1A847DEAC4");
|
|
268
|
public static UUID uuidLa = UUID.fromString("8E338882-2631-4AD6-BC53-799C698C807D");
|
|
269
|
public static UUID uuidLt = UUID.fromString("ECF200B6-B1DF-414F-B215-EDAC503B1A65");
|
|
270
|
public static UUID uuidMa_E = UUID.fromString("80980607-FBD8-46E3-BE56-05D997F2D331");
|
|
271
|
public static UUID uuidMa_S = UUID.fromString("B743AE57-DC0B-4CCC-B4D9-7BF51E579E8E");
|
|
272
|
public static UUID uuidMk = UUID.fromString("0CE83170-2FA7-4C72-81F7-7FFF17343E48");
|
|
273
|
public static UUID uuidMd = UUID.fromString("2CFB90B1-0BA0-4578-AD11-AAD5AAB62899");
|
|
274
|
public static UUID uuidMd_D = UUID.fromString("DBE1F3CA-4C7C-4062-AC1E-ADE0C17DCA52");
|
|
275
|
public static UUID uuidMd_M = UUID.fromString("4658DADD-60FE-46D8-94E3-C6A6C4646105");
|
|
276
|
public static UUID uuidMd_P = UUID.fromString("2C41EB67-A330-4214-B452-6E6741262CE5");
|
|
277
|
public static UUID uuidSi_M = UUID.fromString("2920D738-54A1-49CE-AF3A-9CB742064587");
|
|
278
|
public static UUID uuidMo = UUID.fromString("64F98B98-1050-42C6-B2C7-F72DA642E4D5");
|
|
279
|
public static UUID uuidRf = UUID.fromString("4B6BDFEE-2BCB-4638-99CF-0F9612FA4787");
|
|
280
|
public static UUID uuidRf_C = UUID.fromString("1FFAF0B5-6311-4BF6-977F-8940622C4986");
|
|
281
|
public static UUID uuidRf_E = UUID.fromString("4280A0F6-298E-4B3C-8CE8-56A1208183F7");
|
|
282
|
public static UUID uuidRf_K = UUID.fromString("D9559D9A-1798-4496-8671-DE667CC30EC0");
|
|
283
|
public static UUID uuidRf_CS = UUID.fromString("6E886ACC-22C9-4C63-BEA5-A51AD84AF3D1");
|
|
284
|
public static UUID uuidRf_N = UUID.fromString("B0D8F65E-B5A4-4C0B-A5EF-54CC9F378CC6");
|
|
285
|
public static UUID uuidRf_NW = UUID.fromString("06CC9983-B444-4322-A03E-9A7A2AF1D4AD");
|
|
286
|
public static UUID uuidRf_A = UUID.fromString("1786C13D-D26D-49E3-BA60-E3F3E7852713");
|
|
287
|
public static UUID uuidRf_S = UUID.fromString("6AAB10D5-05E9-470A-8AF5-B6F8D48A71EC");
|
|
288
|
public static UUID uuidSk = UUID.fromString("09267309-E771-4BD7-A67F-B6B4321546E0");
|
|
289
|
public static UUID uuidSl = UUID.fromString("BC242D21-98CA-402C-BDB7-3ED347C7BDFD");
|
|
290
|
public static UUID uuidSy = UUID.fromString("A5974D4B-F878-422C-A7A8-A1D8268109EF");
|
|
291
|
public static UUID uuidUk_U = UUID.fromString("4A6C5155-154E-4B0D-AC73-550B51CCE374");
|
|
292
|
public static UUID uuidSM = UUID.fromString("AC360FC1-30F4-444A-92EB-B55BF98B8E97");
|
|
293
|
public static UUID uuidYu_K = UUID.fromString("F3F05E88-99AF-48FA-92EF-1A169BCC7ACF");
|
|
294
|
public static UUID uuidCg = UUID.fromString("38A4FD15-40D6-43F4-9685-F87465FDBD3F");
|
|
295
|
public static UUID uuidSr = UUID.fromString("468CFEA2-008F-40CF-B2C8-ADF5C09C0FA4");
|
|
296
|
public static UUID uuidIJ = UUID.fromString("9351B972-0C0B-4A97-87B1-4CC11E67D21E");
|
|
297
|
public static UUID uuidLS = UUID.fromString("F7BFDAE0-3DD9-4FC4-9B0B-0BF203B94031");
|
|
298
|
public static UUID uuidRs = UUID.fromString("C4A898CE-0F32-44FE-A8A3-278E11A4BA53");
|
|
299
|
public static UUID uuidSi = UUID.fromString("DB1FACF2-58A5-483E-9B2A-EB4290CA1B71");
|
|
300
|
public static UUID uuidAz_L = UUID.fromString("F5AEF252-C4F8-4ECC-9B6E-4821DB7ADECF");
|
|
301
|
public static UUID uuidHb_E = UUID.fromString("1D400E37-F39A-4CAE-8885-CF485B900CC5");
|
|
302
|
public static UUID uuidHb_N = UUID.fromString("B1D514DA-B9E6-4F0E-ACE4-18FB061FC132");
|
|
303
|
public static UUID uuidGa_M = UUID.fromString("E73942F0-292A-4F6A-8B2F-15AFE8634319");
|
|
304
|
public static UUID uuidMa_M = UUID.fromString("D9F7DFFC-0E76-4790-9AAE-B7AEB5AD76ED");
|
|
305
|
public static UUID uuidRs_N = UUID.fromString("44F262E3-5091-4D28-8081-440D3978FB0B");
|
|
306
|
public static UUID uuidRs_B = UUID.fromString("A575D608-DD53-4C01-B2AF-5067D0711F64");
|
|
307
|
public static UUID uuidRs_C = UUID.fromString("DA4E9CC3-B1CC-403A-81FF-BCC5D9FADBD1");
|
|
308
|
public static UUID uuidRs_W = UUID.fromString("EFABC8FD-0B3C-475B-B532-E1CA0BA0BDBB");
|
|
309
|
public static UUID uuidRs_E = UUID.fromString("7E0F8FA3-5DB9-48F0-9FA8-87FCAB3EAA53");
|
|
310
|
public static UUID uuidAE = UUID.fromString("C8FCD4E0-E1A2-4A7D-8EE2-6F397F5C546C");
|
|
311
|
public static UUID uuidAE_T = UUID.fromString("AF83B475-BB35-4594-8380-EA64B4313091");
|
|
312
|
public static UUID uuidRs_K = UUID.fromString("2188E3A5-0446-47C8-B11B-B4B2B9A71C75");
|
|
313
|
public static UUID uuidCc = UUID.fromString("05B0DD06-30F8-477D-BF4C-30D9DEF56320");
|
|
314
|
public static UUID uuidBt = UUID.fromString("EE13FB74-F3AC-46B1-9F23-6A25AC504446");
|
|
315
|
public static UUID uuidTcs = UUID.fromString("904C3980-B98D-422E-A195-95F4F41FC734");
|
|
316
|
public static UUID uuidKo = UUID.fromString("f3f05e88-99af-48fa-92ef-1a169bcc7acf");
|
|
317
|
public static UUID uuidSe = UUID.fromString("75facd9a-125d-41b5-8f90-776234e782e9");
|
|
318
|
|
|
319
|
//Caucasus area
|
|
320
|
public static UUID uuidVocCaucasusAreas = UUID.fromString("3ef82b77-23cb-4b60-a4b3-edc7e4775ddb");
|
|
321
|
public static UUID uuidCauc1 = UUID.fromString("4fa53820-a416-4bcb-b816-3b0867a6dfec");
|
|
322
|
public static UUID uuidCauc1a = UUID.fromString("092c2165-a203-4bce-bfe6-efd78b2fabf5");
|
|
323
|
public static UUID uuidCauc1b = UUID.fromString("b42f7566-6886-411d-acc6-056eb6845e14");
|
|
324
|
public static UUID uuidCauc2 = UUID.fromString("0b05c6ee-d130-4b12-b1b0-1b6986a3badf");
|
|
325
|
public static UUID uuidCauc2a = UUID.fromString("75f5604b-c985-482e-aefd-5abe46478b55");
|
|
326
|
public static UUID uuidCauc2b = UUID.fromString("b1f46148-1fe0-41f7-b276-a2b3020c513e");
|
|
327
|
public static UUID uuidCauc2c = UUID.fromString("3017b469-42d2-4e7e-8551-e2ee3a1cf403");
|
|
328
|
public static UUID uuidCauc3 = UUID.fromString("0a295a9f-443b-490f-8960-6db9e09bbc6e");
|
|
329
|
public static UUID uuidCauc3a = UUID.fromString("033695d9-4c95-4178-aa0e-45a7bae5a667");
|
|
330
|
public static UUID uuidCauc3b = UUID.fromString("fa289ce5-bf06-4629-8fb6-f2cbdc88ab46");
|
|
331
|
public static UUID uuidCauc3c = UUID.fromString("a6ce69d0-bd0a-4a45-889d-50dfd6c460ea");
|
|
332
|
public static UUID uuidCauc3d = UUID.fromString("c19ad80b-b9c0-487e-8087-89f7ba8871e1");
|
|
333
|
public static UUID uuidCauc4 = UUID.fromString("2633f644-1a50-4770-bd23-e746cd25a261");
|
|
334
|
public static UUID uuidCauc4a = UUID.fromString("b3c8cdfb-4b7a-4936-8b20-72d287621e8d");
|
|
335
|
public static UUID uuidCauc4b = UUID.fromString("a416e238-8893-4ae1-80dd-3a11d8be7bea");
|
|
336
|
public static UUID uuidCauc4c = UUID.fromString("eaf20fcc-a532-4d02-8db7-99e73504a9d8");
|
|
337
|
public static UUID uuidCauc5 = UUID.fromString("92f4fbd6-3eb9-42df-9e03-21aa0e15bf6d");
|
|
338
|
public static UUID uuidCauc5a = UUID.fromString("262fcc45-434d-40f7-8317-f9ad46229cdd");
|
|
339
|
public static UUID uuidCauc5b = UUID.fromString("15add738-963e-4b2c-bf31-aa43a48139c1");
|
|
340
|
public static UUID uuidCauc5c = UUID.fromString("5441359c-acb8-45ea-85a2-bd509b5fb677");
|
|
341
|
public static UUID uuidCauc5d = UUID.fromString("3fc5c58f-43aa-461d-aeaf-b8be2beb4d45");
|
|
342
|
public static UUID uuidCauc6 = UUID.fromString("ef33a819-e022-44f9-8001-53383528c245");
|
|
343
|
public static UUID uuidCauc6a = UUID.fromString("6b4785c5-34d2-400f-9b3d-5f38b01766d1");
|
|
344
|
public static UUID uuidCauc6b = UUID.fromString("eaa10e80-6bdc-404a-9d9e-e653745d2f9f");
|
|
345
|
public static UUID uuidCauc7 = UUID.fromString("c1cf286d-681f-49c9-8066-70473640eeb1");
|
|
346
|
public static UUID uuidCauc7a = UUID.fromString("ff378de7-e367-4611-a4e6-52f8e6883711");
|
|
347
|
public static UUID uuidCauc7b = UUID.fromString("78c86e36-abce-4dfb-b445-8c85f820d199");
|
|
348
|
public static UUID uuidCauc7c = UUID.fromString("4bee620f-fe54-40c1-a161-baf54c89dbb4");
|
|
349
|
public static UUID uuidCauc7d = UUID.fromString("00f89bb2-eefa-4d20-9ca2-27d859423488");
|
|
350
|
public static UUID uuidCauc7e = UUID.fromString("7f303133-3dd1-4dcd-9592-f30e8f3d201b");
|
|
351
|
public static UUID uuidCauc8 = UUID.fromString("07e91d7a-daa3-4096-ae14-eac737821dc7");
|
|
352
|
public static UUID uuidCauc8a = UUID.fromString("d0ed61d1-ae46-42dc-92bf-f72c5e30ecd3");
|
|
353
|
public static UUID uuidCauc8b = UUID.fromString("98158bf1-f58b-4782-948b-e047b8e7c10a");
|
|
354
|
public static UUID uuidCauc8c = UUID.fromString("2d966527-298a-45ed-96da-0dc74eaec23a");
|
|
355
|
public static UUID uuidCauc9 = UUID.fromString("eacd9881-38f4-4323-8b5d-7a80299a2821");
|
|
356
|
public static UUID uuidCauc9a = UUID.fromString("05c357cc-74a7-403c-be4a-667217555e12");
|
|
357
|
public static UUID uuidCauc9b = UUID.fromString("39224e9e-0e92-43df-9554-e7de7311f0a9");
|
|
358
|
public static UUID uuidCauc9c = UUID.fromString("3b6a0540-5a75-41a5-bcdb-6d54042bc864");
|
|
359
|
public static UUID uuidCauc9d = UUID.fromString("6e2d2a39-debe-4f9a-b47d-0d69c0b2624c");
|
|
360
|
public static UUID uuidCauc9e = UUID.fromString("cf648e63-1794-4ec5-9872-f43ab42ac303");
|
|
361
|
public static UUID uuidCauc9f = UUID.fromString("547ace9d-8f69-471f-8bf3-cd547c7682a1");
|
|
362
|
public static UUID uuidCauc10 = UUID.fromString("e92833d5-8573-4c10-97b0-fef972c33c97");
|
|
363
|
public static UUID uuidCauc10a = UUID.fromString("6b6e7e7b-a398-4a9a-81b1-70c4c9f36e9d");
|
|
364
|
public static UUID uuidCauc10b = UUID.fromString("8ca869d0-8fff-4217-8357-f4866af5fa38");
|
|
365
|
public static UUID uuidCauc10c = UUID.fromString("37f06734-45c5-4339-88c7-750a7f912703");
|
|
366
|
public static UUID uuidCauc11 = UUID.fromString("cecc54bc-1f56-416a-bff5-e84de0a58c96");
|
|
367
|
public static UUID uuidCauc11a = UUID.fromString("c949f59c-cf7a-4117-88fa-7b0f8690c110");
|
|
368
|
public static UUID uuidCauc11b = UUID.fromString("0aa6c4fd-fbe5-4eb4-8f01-cb5f186ff4a6");
|
|
369
|
public static UUID uuidCauc11c = UUID.fromString("2922d3ce-2b02-4739-b986-2b7f2944f384");
|
|
370
|
public static UUID uuidCauc11d = UUID.fromString("99d574d8-1c15-4f5f-a530-0a6bdcc9634f");
|
|
371
|
public static UUID uuidCauc11e = UUID.fromString("b995f2c2-05c4-4cca-adee-fd300d887929");
|
|
372
|
public static UUID uuidCauc11f = UUID.fromString("2aaa9b08-be28-41a8-8985-9d06ca9789e0");
|
|
373
|
public static UUID uuidCauc11g = UUID.fromString("72f3fd82-0e4c-4037-a4c9-5ff7fafe27af");
|
|
374
|
public static UUID uuidCauc12 = UUID.fromString("f352e4f0-d2e4-4a0d-a457-539840dfb9b3");
|
|
375
|
|
|
376
|
|
|
377
|
|
|
378
|
//Salvador
|
|
379
|
public static UUID uuidSalvadorAreas = UUID.fromString("8ef90ca3-77d7-4adc-8bbc-1eb354e61b65");
|
|
380
|
|
|
381
|
//E+M PresenceAbsenceStatus
|
|
382
|
public static UUID uuidStatusUndefined = PresenceAbsenceTerm.uuidUndefined;
|
|
383
|
|
|
384
|
//Annotation Type
|
|
385
|
public static final UUID uuidAnnoTypeDistributionStatus = UUID.fromString("b7c4db51-7089-440b-92e2-4006611238f0");
|
|
386
|
|
|
387
|
//Marker Types
|
|
388
|
public static final UUID uuidVocEMMarkerType = UUID.fromString("7c3d5674-87bf-462a-9cd9-d4a51d2f2a77");
|
|
389
|
public static final UUID uuidMisappliedCommonName = UUID.fromString("25f5cfc3-16ab-4aba-a008-0db0f2cf7f9d");
|
|
390
|
public static final UUID uuidEurArea = UUID.fromString("71dd0368-835c-4b53-889a-2bf316e10297");
|
|
391
|
public static final UUID uuidEurMedArea = UUID.fromString("aa6a5b25-3ee3-4771-b4d1-b91918f23fa5");
|
|
392
|
public static final UUID uuidHiddenArea = UUID.fromString("0318c67d-e323-4e9c-bffb-bc0c7f8f9f40");
|
|
393
|
public static final UUID uuidTaxonomicallyValueless = UUID.fromString("e07060cc-5a51-471f-863b-01011e3142fb");
|
|
394
|
public static final UUID uuidProbablyTaxonomicallyValueless = UUID.fromString("3b8b620e-986d-4a87-8070-1884a51c6bad");
|
|
395
|
|
|
396
|
//Extension Types
|
|
397
|
public static final UUID uuidSpeciesExpertName = UUID.fromString("2e8153d2-7412-49e4-87e1-5c38f4c5153a");
|
|
398
|
public static final UUID uuidExpertName = UUID.fromString("24becb79-a90c-47d3-be35-efc87bb48fd3");
|
|
399
|
|
|
400
|
public static final UUID DETAIL_EXT_UUID = UUID.fromString("c3959b4f-d876-4b7a-a739-9260f4cafd1c");
|
|
401
|
public static final UUID SOURCE_ACC_UUID = UUID.fromString("f75ea789-581e-4170-b3f6-2cedfab7fcef");
|
|
402
|
public static final UUID ID_IN_SOURCE_EXT_UUID = UUID.fromString("23dac094-e793-40a4-bad9-649fc4fcfd44");
|
|
403
|
public static final UUID uuidIsoCode = UUID.fromString("048b8153-e3ee-451c-a72c-f1c8bc291c3e");
|
|
404
|
public static final UUID uuidTdwgAreaCode = UUID.fromString("73ad0288-b71b-4a14-9c2e-7f81f1e64a36");
|
|
405
|
public static final UUID uuidMclCode = UUID.fromString("aa27083a-6a96-42aa-a2f8-5541cf057067");
|
|
406
|
public static final UUID PARENTAL_SPECIES_EXT_UUID = UUID.fromString("fee3138a-0084-4571-8e32-56bd14a4b0a8");
|
|
407
|
|
|
408
|
//Identifier Type
|
|
409
|
public static final UUID uuidEMReferenceSourceNumber = UUID.fromString("06b02bbd-bf22-485c-9fd1-fad9175f0d53");
|
|
410
|
public static final UUID uuidEM_MCLIdentifierType = UUID.fromString("c6873fc6-9bf7-4e78-b4f2-5ab0c0dc1f50");
|
|
411
|
|
|
412
|
//Area Level
|
|
413
|
public static final UUID uuidEuroMedAreaLevelTop = UUID.fromString("190d5758-4b96-4016-9412-6dc9c36ef5fd");
|
|
414
|
public static final UUID uuidEuroMedAreaLevelFirst = UUID.fromString("d21503e3-875e-4abc-82ec-f812e3cfea84");
|
|
415
|
public static final UUID uuidEuroMedAreaLevelSecond = UUID.fromString("97ac0bf5-b31c-487a-8ed5-a576f46c902c");
|
|
416
|
public static final UUID uuidCaucasusAreaLevelFirst = UUID.fromString("1899cb19-c59e-425a-892f-6a4f9b115e4a");
|
|
417
|
public static final UUID uuidCaucasusAreaLevelSecond = UUID.fromString("ccfd15bc-6e05-41c7-b839-f7241f518fe1");
|
|
418
|
|
|
419
|
//languages
|
|
420
|
public static final UUID uuidLangMajorcan = UUID.fromString("82d696d7-cb4e-49de-ac89-63a0e12ca766");
|
|
421
|
public static final UUID uuidLangHighAragonese = UUID.fromString("c6e3f012-1b72-4b9a-a401-5ebe3aea4e0a");
|
|
422
|
public static final UUID uuidLangValencian = UUID.fromString("a926ecb9-3e43-48ad-b5a3-11e7a8609a75");
|
|
423
|
|
|
424
|
//REFERENCES
|
|
425
|
public static int REF_ARTICLE = 1;
|
|
426
|
public static int REF_PART_OF_OTHER_TITLE = 2;
|
|
427
|
public static int REF_BOOK = 3;
|
|
428
|
public static int REF_DATABASE = 4;
|
|
429
|
public static int REF_INFORMAL = 5;
|
|
430
|
public static int REF_NOT_APPLICABLE = 6;
|
|
431
|
public static int REF_WEBSITE = 7;
|
|
432
|
public static int REF_CD = 8;
|
|
433
|
public static int REF_JOURNAL = 9;
|
|
434
|
public static int REF_UNKNOWN = 10;
|
|
435
|
public static int REF_PRINT_SERIES = 55;
|
|
436
|
public static int REF_CONFERENCE_PROCEEDINGS = 56;
|
|
437
|
public static int REF_JOURNAL_VOLUME = 57;
|
|
438
|
|
|
439
|
|
|
440
|
|
|
441
|
//NameStatus
|
|
442
|
public static int NAME_ST_NOM_INVAL = 1;
|
|
443
|
public static int NAME_ST_NOM_ILLEG = 2;
|
|
444
|
public static int NAME_ST_NOM_NUD = 3;
|
|
445
|
public static int NAME_ST_NOM_REJ = 4;
|
|
446
|
public static int NAME_ST_NOM_REJ_PROP = 5;
|
|
447
|
public static int NAME_ST_NOM_UTIQUE_REJ = 6;
|
|
448
|
public static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
|
|
449
|
public static int NAME_ST_NOM_CONS = 8;
|
|
450
|
public static int NAME_ST_NOM_CONS_PROP = 9;
|
|
451
|
public static int NAME_ST_ORTH_CONS = 10;
|
|
452
|
public static int NAME_ST_ORTH_CONS_PROP = 11;
|
|
453
|
public static int NAME_ST_NOM_SUPERFL = 12;
|
|
454
|
public static int NAME_ST_NOM_AMBIG = 13;
|
|
455
|
public static int NAME_ST_NOM_PROVIS = 14;
|
|
456
|
public static int NAME_ST_NOM_DUB = 15;
|
|
457
|
public static int NAME_ST_NOM_NOV = 16;
|
|
458
|
public static int NAME_ST_NOM_CONFUS = 17;
|
|
459
|
public static int NAME_ST_NOM_ALTERN = 18;
|
|
460
|
public static int NAME_ST_COMB_INVAL = 19;
|
|
461
|
|
|
462
|
|
|
463
|
//NameRelationShip
|
|
464
|
public static int NAME_REL_IS_BASIONYM_FOR = 1;
|
|
465
|
public static int NAME_REL_IS_LATER_HOMONYM_OF = 2;
|
|
466
|
public static int NAME_REL_IS_REPLACED_SYNONYM_FOR = 3;
|
|
467
|
public static int NAME_REL_IS_VALIDATION_OF = 4;
|
|
468
|
public static int NAME_REL_IS_LATER_VALIDATION_OF = 5;
|
|
469
|
public static int NAME_REL_IS_TYPE_OF = 6;
|
|
470
|
public static int NAME_REL_IS_CONSERVED_TYPE_OF =7;
|
|
471
|
public static int NAME_REL_IS_REJECTED_TYPE_OF = 8;
|
|
472
|
public static int NAME_REL_IS_FIRST_PARENT_OF = 9;
|
|
473
|
public static int NAME_REL_IS_SECOND_PARENT_OF = 10;
|
|
474
|
public static int NAME_REL_IS_FEMALE_PARENT_OF = 11;
|
|
475
|
public static int NAME_REL_IS_MALE_PARENT_OF = 12;
|
|
476
|
public static int NAME_REL_IS_CONSERVED_AGAINST =13;
|
|
477
|
public static int NAME_REL_IS_REJECTED_IN_FAVOUR_OF = 14;
|
|
478
|
public static int NAME_REL_IS_TREATED_AS_LATER_HOMONYM_OF = 15;
|
|
479
|
public static int NAME_REL_IS_ORTHOGRAPHIC_VARIANT_OF = 16;
|
|
480
|
public static int NAME_REL_IS_ALTERNATIVE_NAME_FOR = 17;
|
|
481
|
public static int NAME_REL_HAS_SAME_TYPE_AS = 18;
|
|
482
|
public static int NAME_REL_IS_LECTOTYPE_OF = 61;
|
|
483
|
public static int NAME_REL_TYPE_NOT_DESIGNATED = 62;
|
|
484
|
|
|
485
|
//NameFacts
|
|
486
|
public static String NAME_FACT_PROTOLOGUE = "Protologue";
|
|
487
|
public static String NAME_FACT_ALSO_PUBLISHED_IN = "Also published in";
|
|
488
|
public static String NAME_FACT_BIBLIOGRAPHY = "Bibliography";
|
|
489
|
|
|
490
|
//TaxonRelationShip
|
|
491
|
public static int TAX_REL_IS_INCLUDED_IN = 1;
|
|
492
|
public static int TAX_REL_IS_SYNONYM_OF = 2;
|
|
493
|
public static int TAX_REL_IS_MISAPPLIED_NAME_OF = 3;
|
|
494
|
public static int TAX_REL_IS_PROPARTE_SYN_OF = 4;
|
|
495
|
public static int TAX_REL_IS_PARTIAL_SYN_OF = 5;
|
|
496
|
public static int TAX_REL_IS_HETEROTYPIC_SYNONYM_OF = 6;
|
|
497
|
public static int TAX_REL_IS_HOMOTYPIC_SYNONYM_OF = 7;
|
|
498
|
public static int TAX_REL_IS_PROPARTE_HOMOTYPIC_SYNONYM_OF = 101;
|
|
499
|
public static int TAX_REL_IS_PROPARTE_HETEROTYPIC_SYNONYM_OF = 102;
|
|
500
|
public static int TAX_REL_IS_PARTIAL_HOMOTYPIC_SYNONYM_OF = 103;
|
|
501
|
public static int TAX_REL_IS_PARTIAL_HETEROTYPIC_SYNONYM_OF = 104;
|
|
502
|
public static int TAX_REL_IS_PRO_PARTE_MISAPPLIED_NAME_OF = 110; //does not really exist but as only used in BM export which is not in use anymore it serves as a placeholder for consistency
|
|
503
|
|
|
504
|
|
|
505
|
|
|
506
|
//TaxonStatus
|
|
507
|
public static int T_STATUS_ACCEPTED = 1;
|
|
508
|
public static int T_STATUS_SYNONYM = 2;
|
|
509
|
public static int T_STATUS_PARTIAL_SYN = 3;
|
|
510
|
public static int T_STATUS_PRO_PARTE_SYN = 4;
|
|
511
|
public static int T_STATUS_UNRESOLVED = 5;
|
|
512
|
public static int T_STATUS_ORPHANED = 6;
|
|
513
|
|
|
514
|
|
|
515
|
//Facts
|
|
516
|
public static int FACT_DESCRIPTION = 1;
|
|
517
|
public static int FACT_GROWTH_FORM = 2;
|
|
518
|
public static int FACT_HARDINESS = 3;
|
|
519
|
public static int FACT_ECOLOGY = 4;
|
|
520
|
public static int FACT_PHENOLOGY = 5;
|
|
521
|
public static int FACT_KARYOLOGY = 6;
|
|
522
|
public static int FACT_ILLUSTRATION = 7;
|
|
523
|
public static int FACT_IDENTIFICATION = 8;
|
|
524
|
public static int FACT_OBSERVATION = 9;
|
|
525
|
public static int FACT_DISTRIBUTION_EM = 10;
|
|
526
|
public static int FACT_DISTRIBUTION_WORLD = 11;
|
|
527
|
//E+M
|
|
528
|
public static final UUID uuidFeatureMaps = UUID.fromString("8367730e-f3c3-4361-8360-a2057e4295ed");
|
|
529
|
public static final UUID uuidFeatureConservationStatus = UUID.fromString("a32f33cd-1966-4a22-986c-94c5e688bbd1");
|
|
530
|
public static final UUID uuidFeatureUse = UUID.fromString("199bbbd8-2db6-4335-b454-2e92ae02b699");
|
|
531
|
public static final UUID uuidFeatureComments = UUID.fromString("31cc2b92-5cad-44e9-b50f-b8af591a527c");
|
|
532
|
public static final UUID uuidFeatureDistrEM = UUID.fromString("a5ba7e7f-ca7f-4f50-afc7-73e76b3231d4");
|
|
533
|
public static final UUID uuidFeatureDistrWorld = UUID.fromString("e4e24080-7017-47e6-924e-d2560fa68fb8");
|
|
534
|
public static final UUID uuidFeatureEditorBrackets = UUID.fromString("b3b5bc1a-7ba8-4a39-9c0d-63ba599eb5d8");
|
|
535
|
public static final UUID uuidFeatureEditorParenthesis = UUID.fromString("6ee10a2e-ff02-4cf4-a520-89630edc5b44");
|
|
536
|
public static final UUID uuidFeatureInedited = UUID.fromString("c93e2968-bc52-4165-9755-ce37611faf01");
|
|
537
|
public static final UUID uuidFeatureCommentsEditing = UUID.fromString("7a155021-158a-48bb-81d0-9a72b718e2de");
|
|
538
|
|
|
539
|
//Salvador
|
|
540
|
public static final UUID uuidFeatureDistributionGlobal = UUID.fromString("9bd09ada-7bb3-4fe5-be35-dc4564bdd161");
|
|
541
|
public static final UUID uuidReporteParaElSalvador = UUID.fromString("1869a1a6-becb-468e-bc62-b2473f7d9391");
|
|
542
|
public static final UUID uuidFeatureOtherReferences = UUID.fromString("f5dc30bd-a5b1-436d-8cc0-69a999e61590");
|
|
543
|
public static final UUID uuidFeatureTaxonIllustrationReferences = UUID.fromString("6062122b-07c7-44e4-a9af-7daea0005819");
|
|
544
|
public static final UUID uuidFeatureSpecimenNotes = UUID.fromString("3c657936-f51a-4bfa-9ea4-287926ac63e5");
|
|
545
|
public static final UUID uuidFeatureEditorialNotes = UUID.fromString("5f971b66-1bc7-4b12-923e-2b4ee8b3737d");
|
|
546
|
public static final UUID uuidFeatureHabitatSalvador = UUID.fromString("d03a5e2c-fd93-4fff-b0b3-e16cefbb9847");
|
|
547
|
|
|
548
|
public static UUID uuidNomStatusCombIned = UUID.fromString("dde8a2e7-bf9e-42ec-b186-d5bde9c9c128");
|
|
549
|
public static UUID uuidNomStatusSpNovIned = UUID.fromString("1a359ca1-9364-43bc-93e4-834bdcd52b72");
|
|
550
|
public static UUID uuidNomStatusNomOrthCons = UUID.fromString("0f838183-ffa0-4014-928e-0e3a27eb3918");
|
|
551
|
|
|
552
|
static NomenclaturalStatusType nomStatusCombIned;
|
|
553
|
static NomenclaturalStatusType nomStatusSpNovIned;
|
|
554
|
static NomenclaturalStatusType nomStatusNomOrthCons;
|
|
555
|
|
|
556
|
public static NomenclaturalStatusType nomStatusTypeAbbrev2NewNomStatusType(String nomStatus){
|
|
557
|
NomenclaturalStatusType result = null;
|
|
558
|
if (nomStatus == null){
|
|
559
|
return null;
|
|
560
|
}else if (nomStatus.equalsIgnoreCase("comb. ined.")){
|
|
561
|
if (nomStatusCombIned == null){
|
|
562
|
nomStatusCombIned = NomenclaturalStatusType.NewInstance("comb. ined.", "comb. ined.", "comb. ined.", Language.LATIN());
|
|
563
|
nomStatusCombIned.setUuid(uuidNomStatusCombIned);
|
|
564
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusCombIned);
|
|
565
|
}
|
|
566
|
result = nomStatusCombIned;
|
|
567
|
}else if (nomStatus.equalsIgnoreCase("sp. nov. ined.")){
|
|
568
|
if (nomStatusSpNovIned == null){
|
|
569
|
nomStatusSpNovIned = NomenclaturalStatusType.NewInstance("sp. nov. ined.", "sp. nov. ined.", "sp. nov. ined.", Language.LATIN());
|
|
570
|
nomStatusSpNovIned.setUuid(uuidNomStatusSpNovIned);
|
|
571
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusSpNovIned);
|
|
572
|
}
|
|
573
|
result = nomStatusSpNovIned;
|
|
574
|
}else if (nomStatus.equalsIgnoreCase("nom. & orth. cons.")){
|
|
575
|
if (nomStatusNomOrthCons == null){
|
|
576
|
nomStatusNomOrthCons = NomenclaturalStatusType.NewInstance("nom. & orth. cons.", "nom. & orth. cons.", "nom. & orth. cons.", Language.LATIN());
|
|
577
|
nomStatusNomOrthCons.setUuid(uuidNomStatusNomOrthCons);
|
|
578
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusNomOrthCons);
|
|
579
|
}
|
|
580
|
result = nomStatusNomOrthCons;
|
|
581
|
}
|
|
582
|
return result;
|
|
583
|
}
|
|
584
|
|
|
585
|
|
|
586
|
public static NomenclaturalStatus nomStatusFkToNomStatus(int nomStatusFk, String nomStatusLabel) throws UnknownCdmTypeException{
|
|
587
|
if (nomStatusFk == NAME_ST_NOM_INVAL){
|
|
588
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.INVALID());
|
|
589
|
}else if (nomStatusFk == NAME_ST_NOM_ILLEG){
|
|
590
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ILLEGITIMATE());
|
|
591
|
}else if (nomStatusFk == NAME_ST_NOM_NUD){
|
|
592
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.NUDUM());
|
|
593
|
}else if (nomStatusFk == NAME_ST_NOM_REJ){
|
|
594
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.REJECTED());
|
|
595
|
}else if (nomStatusFk == NAME_ST_NOM_REJ_PROP){
|
|
596
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.REJECTED_PROP());
|
|
597
|
}else if (nomStatusFk == NAME_ST_NOM_UTIQUE_REJ){
|
|
598
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.UTIQUE_REJECTED());
|
|
599
|
}else if (nomStatusFk == NAME_ST_NOM_UTIQUE_REJ_PROP){
|
|
600
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.UTIQUE_REJECTED_PROP());
|
|
601
|
}else if (nomStatusFk == NAME_ST_NOM_CONS){
|
|
602
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONSERVED());
|
|
603
|
}else if (nomStatusFk == NAME_ST_NOM_CONS_PROP){
|
|
604
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONSERVED_PROP());
|
|
605
|
}else if (nomStatusFk == NAME_ST_ORTH_CONS){
|
|
606
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED());
|
|
607
|
}else if (nomStatusFk == NAME_ST_ORTH_CONS_PROP){
|
|
608
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP());
|
|
609
|
}else if (nomStatusFk == NAME_ST_NOM_SUPERFL){
|
|
610
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.SUPERFLUOUS());
|
|
611
|
}else if (nomStatusFk == NAME_ST_NOM_AMBIG){
|
|
612
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.AMBIGUOUS());
|
|
613
|
}else if (nomStatusFk == NAME_ST_NOM_PROVIS){
|
|
614
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.PROVISIONAL());
|
|
615
|
}else if (nomStatusFk == NAME_ST_NOM_DUB){
|
|
616
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.DOUBTFUL());
|
|
617
|
}else if (nomStatusFk == NAME_ST_NOM_NOV){
|
|
618
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.NOVUM());
|
|
619
|
}else if (nomStatusFk == NAME_ST_NOM_CONFUS){
|
|
620
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONFUSUM());
|
|
621
|
}else if (nomStatusFk == NAME_ST_NOM_ALTERN){
|
|
622
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ALTERNATIVE());
|
|
623
|
}else if (nomStatusFk == NAME_ST_COMB_INVAL){
|
|
624
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.COMBINATION_INVALID());
|
|
625
|
}else {
|
|
626
|
NomenclaturalStatusType statusType = nomStatusTypeAbbrev2NewNomStatusType(nomStatusLabel);
|
|
627
|
NomenclaturalStatus result = NomenclaturalStatus.NewInstance(statusType);
|
|
628
|
if (result != null){
|
|
629
|
return result;
|
|
630
|
}
|
|
631
|
throw new UnknownCdmTypeException("Unknown NomenclaturalStatus (id=" + Integer.valueOf(nomStatusFk).toString() + ")");
|
|
632
|
}
|
|
633
|
}
|
|
634
|
|
|
635
|
public static UUID getEMAreaUuid(String areaId){
|
|
636
|
if (areaId == null){
|
|
637
|
logger.warn("No AreaId given");
|
|
638
|
return null;
|
|
639
|
}else if (areaId.equals("EM")){return uuidEM;
|
|
640
|
}else if (areaId.equals("EUR")){return uuidEUR;
|
|
641
|
}else if (areaId.equals("14")){return uuid14;
|
|
642
|
}else if (areaId.equals("20")){return uuid20;
|
|
643
|
}else if (areaId.equals("21")){return uuid21;
|
|
644
|
}else if (areaId.equals("33")){return uuid33;
|
|
645
|
}else if (areaId.equals("Da")){return uuidDa;
|
|
646
|
}else if (areaId.equals("Fe")){return uuidFe;
|
|
647
|
}else if (areaId.equals("Fa")){return uuidFa;
|
|
648
|
}else if (areaId.equals("Br")){return uuidBr;
|
|
649
|
}else if (areaId.equals("Is")){return uuidIs;
|
|
650
|
}else if (areaId.equals("Hb")){return uuidHb;
|
|
651
|
}else if (areaId.equals("No")){return uuidNo;
|
|
652
|
}else if (areaId.equals("Sb")){return uuidSb;
|
|
653
|
}else if (areaId.equals("Su")){return uuidSu;
|
|
654
|
}else if (areaId.equals("Au")){return uuidAu;
|
|
655
|
}else if (areaId.equals("Be")){return uuidBe;
|
|
656
|
}else if (areaId.equals("Cz")){return uuidCz;
|
|
657
|
}else if (areaId.equals("Ge")){return uuidGe;
|
|
658
|
}else if (areaId.equals("Hu")){return uuidHu;
|
|
659
|
}else if (areaId.equals("Ho")){return uuidHo;
|
|
660
|
}else if (areaId.equals("Po")){return uuidPo;
|
|
661
|
}else if (areaId.equals("He")){return uuidHe;
|
|
662
|
}else if (areaId.equals("Bl")){return uuidBl;
|
|
663
|
}else if (areaId.equals("Co")){return uuidCo;
|
|
664
|
}else if (areaId.equals("Ga")){return uuidGa;
|
|
665
|
}else if (areaId.equals("Lu")){return uuidLu;
|
|
666
|
}else if (areaId.equals("Sa")){return uuidSa;
|
|
667
|
}else if (areaId.equals("Hs")){return uuidHs;
|
|
668
|
}else if (areaId.equals("Al")){return uuidAl;
|
|
669
|
}else if (areaId.equals("Bu")){return uuidBu;
|
|
670
|
}else if (areaId.equals("Gr")){return uuidGr;
|
|
671
|
}else if (areaId.equals("It")){return uuidIt;
|
|
672
|
}else if (areaId.equals("Cr")){return uuidCr;
|
|
673
|
}else if (areaId.equals("Rm")){return uuidRm;
|
|
674
|
}else if (areaId.equals("Si(S)")){return uuidSi_S;
|
|
675
|
}else if (areaId.equals("Tu(E)")){return uuidTu_E;
|
|
676
|
}else if (areaId.equals("Ju")){return uuidJu;
|
|
677
|
}else if (areaId.equals("Uk(K)")){return uuidUk_K;
|
|
678
|
}else if (areaId.equals("Uk")){return uuidUk;
|
|
679
|
}else if (areaId.equals("Ag")){return uuidAg;
|
|
680
|
}else if (areaId.equals("Eg")){return uuidEg;
|
|
681
|
}else if (areaId.equals("Li")){return uuidLi;
|
|
682
|
}else if (areaId.equals("Ma")){return uuidMa;
|
|
683
|
}else if (areaId.equals("Tn")){return uuidTn;
|
|
684
|
}else if (areaId.equals("Az")){return uuidAz;
|
|
685
|
}else if (areaId.equals("Sg")){return uuidSg;
|
|
686
|
}else if (areaId.equals("Ab")){return uuidAb;
|
|
687
|
}else if (areaId.equals("Ar")){return uuidAr;
|
|
688
|
}else if (areaId.equals("Ab(A)")){return uuidAb_A;
|
|
689
|
}else if (areaId.equals("Gg")){return uuidGg;
|
|
690
|
}else if (areaId.equals("Ab(N)")){return uuidAb_N;
|
|
691
|
}else if (areaId.equals("Cy")){return uuidCy;
|
|
692
|
}else if (areaId.equals("AE(G)")){return uuidAE_G;
|
|
693
|
}else if (areaId.equals("Le")){return uuidLe;
|
|
694
|
}else if (areaId.equals("Sn")){return uuidSn;
|
|
695
|
}else if (areaId.equals("Tu(A)")){return uuidTu_A;
|
|
696
|
}else if (areaId.equals("Tu")){return uuidTu;
|
|
697
|
}else if (areaId.equals("Au(A)")){return uuidAu_A;
|
|
698
|
}else if (areaId.equals("Au(L)")){return uuidAu_L;
|
|
699
|
}else if (areaId.equals("Az(C)")){return uuidAz_C;
|
|
700
|
}else if (areaId.equals("Az(F)")){return uuidAz_F;
|
|
701
|
}else if (areaId.equals("Az(G)")){return uuidAz_G;
|
|
702
|
}else if (areaId.equals("Az(P)")){return uuidAz_P;
|
|
703
|
}else if (areaId.equals("Az(S)")){return uuidAz_S;
|
|
704
|
}else if (areaId.equals("Az(J)")){return uuidAz_J;
|
|
705
|
}else if (areaId.equals("Az(M)")){return uuidAz_M;
|
|
706
|
}else if (areaId.equals("Az(T)")){return uuidAz_T;
|
|
707
|
}else if (areaId.equals("Be(B)")){return uuidBe_B;
|
|
708
|
}else if (areaId.equals("Be(L)")){return uuidBe_L;
|
|
709
|
}else if (areaId.equals("Bl(I)")){return uuidBl_I;
|
|
710
|
}else if (areaId.equals("Bl(M)")){return uuidBl_M;
|
|
711
|
}else if (areaId.equals("Bl(N)")){return uuidBl_N;
|
|
712
|
}else if (areaId.equals("BH")){return uuidBH;
|
|
713
|
}else if (areaId.equals("By")){return uuidBy;
|
|
714
|
}else if (areaId.equals("Ca")){return uuidCa;
|
|
715
|
}else if (areaId.equals("Ca(F)")){return uuidCa_F;
|
|
716
|
}else if (areaId.equals("Ca(G)")){return uuidCa_G;
|
|
717
|
}else if (areaId.equals("Ca(C)")){return uuidCa_C;
|
|
718
|
}else if (areaId.equals("Ca(H)")){return uuidCa_H;
|
|
719
|
}else if (areaId.equals("Ca(L)")){return uuidCa_L;
|
|
720
|
}else if (areaId.equals("Ca(P)")){return uuidCa_P;
|
|
721
|
}else if (areaId.equals("Ca(T)")){return uuidCa_T;
|
|
722
|
}else if (areaId.equals("Cs")){return uuidCs;
|
|
723
|
}else if (areaId.equals("Ct")){return uuidCt;
|
|
724
|
}else if (areaId.equals("Es")){return uuidEs;
|
|
725
|
}else if (areaId.equals("Ga(C)")){return uuidGa_C;
|
|
726
|
}else if (areaId.equals("Ga(F)")){return uuidGa_F;
|
|
727
|
}else if (areaId.equals("Gg(A)")){return uuidGg_A;
|
|
728
|
}else if (areaId.equals("Gg(D)")){return uuidGg_D;
|
|
729
|
}else if (areaId.equals("Gg(G)")){return uuidGg_G;
|
|
730
|
}else if (areaId.equals("Hs(A)")){return uuidHs_A;
|
|
731
|
}else if (areaId.equals("Hs(G)")){return uuidHs_G;
|
|
732
|
}else if (areaId.equals("Hs(S)")){return uuidHs_S;
|
|
733
|
}else if (areaId.equals("Ir")){return uuidIr;
|
|
734
|
}else if (areaId.equals("It(I)")){return uuidIt_I;
|
|
735
|
}else if (areaId.equals("It(S)")){return uuidIt_S;
|
|
736
|
}else if (areaId.equals("Jo")){return uuidJo;
|
|
737
|
}else if (areaId.equals("Kz")){return uuidKz;
|
|
738
|
}else if (areaId.equals("La")){return uuidLa;
|
|
739
|
}else if (areaId.equals("Lt")){return uuidLt;
|
|
740
|
}else if (areaId.equals("Ma(E)")){return uuidMa_E;
|
|
741
|
}else if (areaId.equals("Ma(S)")){return uuidMa_S;
|
|
742
|
}else if (areaId.equals("Mk")){return uuidMk;
|
|
743
|
}else if (areaId.equals("Md")){return uuidMd;
|
|
744
|
}else if (areaId.equals("Md(D)")){return uuidMd_D;
|
|
745
|
}else if (areaId.equals("Md(M)")){return uuidMd_M;
|
|
746
|
}else if (areaId.equals("Md(P)")){return uuidMd_P;
|
|
747
|
}else if (areaId.equals("Si(M)")){return uuidSi_M;
|
|
748
|
}else if (areaId.equals("Mo")){return uuidMo;
|
|
749
|
}else if (areaId.equals("Rf")){return uuidRf;
|
|
750
|
}else if (areaId.equals("Rf(C)")){return uuidRf_C;
|
|
751
|
}else if (areaId.equals("Rf(E)")){return uuidRf_E;
|
|
752
|
}else if (areaId.equals("Rf(K)")){return uuidRf_K;
|
|
753
|
}else if (areaId.equals("Rf(CS)")){return uuidRf_CS;
|
|
754
|
}else if (areaId.equals("Rf(N)")){return uuidRf_N;
|
|
755
|
}else if (areaId.equals("Rf(NW)")){return uuidRf_NW;
|
|
756
|
}else if (areaId.equals("Rf(A)")){return uuidRf_A;
|
|
757
|
}else if (areaId.equals("Rf(S)")){return uuidRf_S;
|
|
758
|
}else if (areaId.equals("Sk")){return uuidSk;
|
|
759
|
}else if (areaId.equals("Sl")){return uuidSl;
|
|
760
|
}else if (areaId.equals("Sy")){return uuidSy;
|
|
761
|
}else if (areaId.equals("Uk(U)")){return uuidUk_U;
|
|
762
|
}else if (areaId.equals("SM")){return uuidSM;
|
|
763
|
}else if (areaId.equals("Yu(K)")){return uuidYu_K;
|
|
764
|
}else if (areaId.equals("Cg")){return uuidCg;
|
|
765
|
}else if (areaId.equals("Sr")){return uuidSr;
|
|
766
|
}else if (areaId.equals("IJ")){return uuidIJ;
|
|
767
|
}else if (areaId.equals("LS")){return uuidLS;
|
|
768
|
}else if (areaId.equals("Rs")){return uuidRs;
|
|
769
|
}else if (areaId.equals("Si")){return uuidSi;
|
|
770
|
}else if (areaId.equals("Az(L)")){return uuidAz_L;
|
|
771
|
}else if (areaId.equals("Hb(E)")){return uuidHb_E;
|
|
772
|
}else if (areaId.equals("Hb(N)")){return uuidHb_N;
|
|
773
|
}else if (areaId.equals("Ga(M)")){return uuidGa_M;
|
|
774
|
}else if (areaId.equals("Ma(M)")){return uuidMa_M;
|
|
775
|
}else if (areaId.equals("Rs(N)")){return uuidRs_N;
|
|
776
|
}else if (areaId.equals("Rs(B)")){return uuidRs_B;
|
|
777
|
}else if (areaId.equals("Rs(C)")){return uuidRs_C;
|
|
778
|
}else if (areaId.equals("Rs(W)")){return uuidRs_W;
|
|
779
|
}else if (areaId.equals("Rs(E)")){return uuidRs_E;
|
|
780
|
}else if (areaId.equals("AE")){return uuidAE;
|
|
781
|
}else if (areaId.equals("AE(T)")){return uuidAE_T;
|
|
782
|
}else if (areaId.equals("Rs(K)")){return uuidRs_K;
|
|
783
|
}else if (areaId.equals("Cc")){return uuidCc;
|
|
784
|
}else if (areaId.equals("Bt")){return uuidBt;
|
|
785
|
}else if (areaId.equals("Tcs")){return uuidTcs;
|
|
786
|
}else if (areaId.equals("Azores")){return null; //these are duplicates and are handled differently
|
|
787
|
}else if (areaId.equals("Canary Is.")){return null; //these are duplicates and are handled differently
|
|
788
|
}else{
|
|
789
|
logger.warn("Area not found: " + areaId);
|
|
790
|
return null;
|
|
791
|
}
|
|
792
|
|
|
793
|
}
|
|
794
|
|
|
795
|
|
|
796
|
//TypeDesignation
|
|
797
|
public static SpecimenTypeDesignationStatus typeStatusId2TypeStatus (int typeStatusId) throws UnknownCdmTypeException{
|
|
798
|
switch (typeStatusId){
|
|
799
|
case 0: return null;
|
|
800
|
case 1: return SpecimenTypeDesignationStatus.HOLOTYPE();
|
|
801
|
case 2: return SpecimenTypeDesignationStatus.LECTOTYPE();
|
|
802
|
case 3: return SpecimenTypeDesignationStatus.NEOTYPE();
|
|
803
|
case 4: return SpecimenTypeDesignationStatus.EPITYPE();
|
|
804
|
case 5: return SpecimenTypeDesignationStatus.ISOLECTOTYPE();
|
|
805
|
case 6: return SpecimenTypeDesignationStatus.ISONEOTYPE();
|
|
806
|
case 7: return SpecimenTypeDesignationStatus.ISOTYPE();
|
|
807
|
case 8: return SpecimenTypeDesignationStatus.PARANEOTYPE();
|
|
808
|
case 9: return SpecimenTypeDesignationStatus.PARATYPE();
|
|
809
|
case 10: return SpecimenTypeDesignationStatus.SECOND_STEP_LECTOTYPE();
|
|
810
|
case 11: return SpecimenTypeDesignationStatus.SECOND_STEP_NEOTYPE();
|
|
811
|
case 12: return SpecimenTypeDesignationStatus.SYNTYPE();
|
|
812
|
case 21: return SpecimenTypeDesignationStatus.ICONOTYPE();
|
|
813
|
case 22: return SpecimenTypeDesignationStatus.PHOTOTYPE();
|
|
814
|
default: {
|
|
815
|
throw new UnknownCdmTypeException("Unknown TypeDesignationStatus (id=" + Integer.valueOf(typeStatusId).toString() + ")");
|
|
816
|
}
|
|
817
|
}
|
|
818
|
}
|
|
819
|
|
|
820
|
//TypeDesignation
|
|
821
|
public static TaxonRelationshipType taxonRelId2TaxonRelType (int relTaxonTypeId, ResultWrapper<Boolean> isInverse, ResultWrapper<Boolean> isDoubtful) throws UnknownCdmTypeException{
|
|
822
|
isInverse.setValue(false);
|
|
823
|
switch (relTaxonTypeId){
|
|
824
|
case 0: return null;
|
|
825
|
case 11: return TaxonRelationshipType.CONGRUENT_TO();
|
|
826
|
case 12: isInverse.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
827
|
case 13: isInverse.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_INCLUDES();
|
|
828
|
case 14: return TaxonRelationshipType.INCLUDES();
|
|
829
|
case 15: return TaxonRelationshipType.CONGRUENT_OR_INCLUDES();
|
|
830
|
case 16: return TaxonRelationshipType.INCLUDED_OR_INCLUDES();
|
|
831
|
case 17: return TaxonRelationshipType.CONGRUENT_OR_INCLUDED_OR_INCLUDES();
|
|
832
|
case 18: return TaxonRelationshipType.OVERLAPS();
|
|
833
|
case 19: return TaxonRelationshipType.CONGRUENT_OR_OVERLAPS();
|
|
834
|
case 20: isInverse.setValue(true); return TaxonRelationshipType.INCLUDES_OR_OVERLAPS();
|
|
835
|
case 21: isInverse.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_INCLUDES_OR_OVERLAPS();
|
|
836
|
case 22: return TaxonRelationshipType.INCLUDES_OR_OVERLAPS();
|
|
837
|
case 23: return TaxonRelationshipType.CONGRUENT_OR_INCLUDES_OR_OVERLAPS();
|
|
838
|
case 24: return TaxonRelationshipType.INCLUDED_OR_INCLUDES_OR_OVERLAPS();
|
|
839
|
|
|
840
|
case 26: return TaxonRelationshipType.EXCLUDES();
|
|
841
|
|
|
842
|
//TODO other relationshipTypes
|
|
843
|
|
|
844
|
case 40: return TaxonRelationshipType.NOT_CONGRUENT_TO();
|
|
845
|
|
|
846
|
//how to implement this, what is a purely doubtful relationship ??
|
|
847
|
// case 42: isDoubtful.setValue(true); return TaxonRelationshipType.();
|
|
848
|
|
|
849
|
case 43: isDoubtful.setValue(true); return TaxonRelationshipType.CONGRUENT_TO();
|
|
850
|
case 44: isInverse.setValue(true);isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
851
|
case 46: isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
852
|
case 48: isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDED_OR_INCLUDES();
|
|
853
|
case 50: isDoubtful.setValue(true); return TaxonRelationshipType.OVERLAPS();
|
|
854
|
case 51: isDoubtful.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_OVERLAPS();
|
|
855
|
case 58: isDoubtful.setValue(true); return TaxonRelationshipType.EXCLUDES();
|
|
856
|
|
|
857
|
|
|
858
|
default: {
|
|
859
|
throw new UnknownCdmTypeException("Unknown TypeDesignationStatus (id=" + Integer.valueOf(relTaxonTypeId).toString() + ")");
|
|
860
|
}
|
|
861
|
}
|
|
862
|
}
|
|
863
|
|
|
864
|
//TypeDesignation
|
|
865
|
public static HybridRelationshipType relNameId2HybridRel (int relNameId) throws UnknownCdmTypeException{
|
|
866
|
switch (relNameId){
|
|
867
|
case 0: return null;
|
|
868
|
case 9: return HybridRelationshipType.FIRST_PARENT();
|
|
869
|
case 10: return HybridRelationshipType.SECOND_PARENT();
|
|
870
|
case 11: return HybridRelationshipType.FEMALE_PARENT();
|
|
871
|
case 12: return HybridRelationshipType.MALE_PARENT();
|
|
872
|
default: {
|
|
873
|
throw new UnknownCdmTypeException("Unknown HybridRelationshipType (id=" + Integer.valueOf(relNameId).toString() + ")");
|
|
874
|
}
|
|
875
|
}
|
|
876
|
}
|
|
877
|
|
|
878
|
//OccStatus
|
|
879
|
public static PresenceAbsenceTerm occStatus2PresenceAbsence (int occStatusId) throws UnknownCdmTypeException{
|
|
880
|
switch (occStatusId){
|
|
881
|
case 0: return null;
|
|
882
|
case 110: return PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();
|
|
883
|
case 120: return PresenceAbsenceTerm.CULTIVATED();
|
|
884
|
case 210: return PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();
|
|
885
|
case 220: return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();
|
|
886
|
case 230: return PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED();
|
|
887
|
case 240: return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();
|
|
888
|
case 250: return PresenceAbsenceTerm.INTRODUCED();
|
|
889
|
case 260: return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();
|
|
890
|
case 270: return PresenceAbsenceTerm.CASUAL();
|
|
891
|
case 280: return PresenceAbsenceTerm.NATURALISED();
|
|
892
|
case 310: return PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR();
|
|
893
|
case 320: return PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE();
|
|
894
|
case 330: return PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE();
|
|
895
|
case 340: return PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE();
|
|
896
|
case 350: return PresenceAbsenceTerm.NATIVE();
|
|
897
|
case 999: {
|
|
898
|
// logger.info("endemic for EM can not be transformed in legal status. Used 'PRESENT' instead");
|
|
899
|
//TODO preliminary
|
|
900
|
return PresenceAbsenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA();
|
|
901
|
}
|
|
902
|
default: {
|
|
903
|
throw new UnknownCdmTypeException("Unknown occurrence status (id=" + Integer.valueOf(occStatusId).toString() + ")");
|
|
904
|
}
|
|
905
|
}
|
|
906
|
}
|
|
907
|
|
|
908
|
|
|
909
|
//FactCategory
|
|
910
|
public static Feature factCategory2Feature (int factCategoryId) throws UnknownCdmTypeException{
|
|
911
|
switch (factCategoryId){
|
|
912
|
case 0: return null;
|
|
913
|
case 1: return Feature.DESCRIPTION();
|
|
914
|
case 4: return Feature.ECOLOGY();
|
|
915
|
case 5: return Feature.PHENOLOGY();
|
|
916
|
case 12: return Feature.COMMON_NAME();
|
|
917
|
case 13: return Feature.OCCURRENCE();
|
|
918
|
case 99: return Feature.CITATION();
|
|
919
|
default: {
|
|
920
|
throw new UnknownCdmTypeException("Unknown FactCategory (id=" + Integer.valueOf(factCategoryId).toString() + ")");
|
|
921
|
}
|
|
922
|
}
|
|
923
|
}
|
|
924
|
|
|
925
|
public static UUID getFeatureUuid(String key) {
|
|
926
|
if (key == null){
|
|
927
|
return null;
|
|
928
|
}else if (key.equalsIgnoreCase("14-Maps")){ return uuidFeatureMaps;
|
|
929
|
}else if (key.equalsIgnoreCase("301-Conservation Status")){ return uuidFeatureConservationStatus;
|
|
930
|
}else if (key.equalsIgnoreCase("302-Use")){ return uuidFeatureUse;
|
|
931
|
}else if (key.equalsIgnoreCase("303-Comments")){ return uuidFeatureComments;
|
|
932
|
|
|
933
|
}else if (key.equalsIgnoreCase("10-general distribution (Euro+Med)")){ return uuidFeatureDistrEM;
|
|
934
|
}else if (key.equalsIgnoreCase("11-general distribution (world)")){ return uuidFeatureDistrWorld;
|
|
935
|
}else if (key.equalsIgnoreCase("250-Editor_Brackets")){ return uuidFeatureEditorBrackets;
|
|
936
|
}else if (key.equalsIgnoreCase("251-Editor_Parenthesis")){ return uuidFeatureEditorParenthesis;
|
|
937
|
}else if (key.equalsIgnoreCase("252-Inedited")){ return uuidFeatureInedited;
|
|
938
|
}else if (key.equalsIgnoreCase("253-Comments on editing process")){ return uuidFeatureCommentsEditing;
|
|
939
|
|
|
940
|
//salvador
|
|
941
|
}else if (key.equalsIgnoreCase("302-Usos")){ return Feature.uuidUses;
|
|
942
|
}else if (key.equalsIgnoreCase("303-Distribución global")){ return uuidFeatureDistributionGlobal;
|
|
943
|
}else if (key.equalsIgnoreCase("306-Nombre(s) común(es)")){ return Feature.uuidCommonName;
|
|
944
|
}else if (key.equalsIgnoreCase("307-Muestras de herbario")){ return Feature.uuidSpecimen;
|
|
945
|
}else if (key.equalsIgnoreCase("309-Reporte para El Salvador")){ return uuidReporteParaElSalvador;
|
|
946
|
}else if (key.equalsIgnoreCase("310-Otras referencias")){ return uuidFeatureOtherReferences;
|
|
947
|
}else if (key.equalsIgnoreCase("311-Ilustración(es)")){ return uuidFeatureTaxonIllustrationReferences;
|
|
948
|
}else if (key.equalsIgnoreCase("312-Imágen")){ return Feature.uuidImage;
|
|
949
|
}else if (key.equalsIgnoreCase("350-Descripción*")){ return Feature.uuidDescription;
|
|
950
|
}else if (key.equalsIgnoreCase("1800-Notas de muestras*")){ return uuidFeatureSpecimenNotes;
|
|
951
|
}else if (key.equalsIgnoreCase("1900-Notas editoriales*")){ return uuidFeatureEditorialNotes;
|
|
952
|
}else if (key.equalsIgnoreCase("2000-Habitat en El Salvador*")){ return uuidFeatureHabitatSalvador;
|
|
953
|
|
|
954
|
|
|
955
|
}else{
|
|
956
|
return null;
|
|
957
|
}
|
|
958
|
}
|
|
959
|
|
|
960
|
|
|
961
|
static Rank collSpeciesRank;
|
|
962
|
/**
|
|
963
|
* @param i
|
|
964
|
* @return
|
|
965
|
*/
|
|
966
|
private static Rank rankId2NewRank(Integer rankId, boolean switchRank) {
|
|
967
|
Rank result = null;
|
|
968
|
if (rankId == null){
|
|
969
|
return null;
|
|
970
|
}else if (rankId == 57){
|
|
971
|
|
|
972
|
if (collSpeciesRank == null){
|
|
973
|
collSpeciesRank = Rank.NewInstance(RankClass.SpeciesGroup, "Collective species", "Coll. species", "coll.");
|
|
974
|
collSpeciesRank.setUuid(Rank.uuidCollSpecies);
|
|
975
|
OrderedTermVocabulary<Rank> voc = (OrderedTermVocabulary<Rank>)Rank.SPECIES().getVocabulary();
|
|
976
|
voc.addTermBelow(collSpeciesRank, Rank.SPECIESGROUP());
|
|
977
|
}
|
|
978
|
result = collSpeciesRank;
|
|
979
|
}
|
|
980
|
return result;
|
|
981
|
}
|
|
982
|
|
|
983
|
|
|
984
|
public static Rank rankId2Rank (ResultSet rs, boolean useUnknown, boolean switchSpeciesGroup) throws UnknownCdmTypeException{
|
|
985
|
Rank result;
|
|
986
|
try {
|
|
987
|
int rankId = rs.getInt("rankFk");
|
|
988
|
|
|
989
|
String abbrev = rs.getString("rankAbbrev");
|
|
990
|
String rankName = rs.getString("rank");
|
|
991
|
if (logger.isDebugEnabled()){logger.debug(rankId);}
|
|
992
|
if (logger.isDebugEnabled()){logger.debug(abbrev);}
|
|
993
|
if (logger.isDebugEnabled()){logger.debug(rankName);}
|
|
994
|
|
|
995
|
if (switchSpeciesGroup){
|
|
996
|
if (rankId == 59){
|
|
997
|
rankId = 57;
|
|
998
|
}else if (rankId == 57){
|
|
999
|
rankId = 59;
|
|
1000
|
}
|
|
1001
|
}
|
|
1002
|
try {
|
|
1003
|
result = Rank.getRankByLatinNameOrIdInVoc(abbrev);
|
|
1004
|
} catch (UnknownCdmTypeException e) {
|
|
1005
|
try {
|
|
1006
|
result = Rank.getRankByLatinNameOrIdInVoc(rankName);
|
|
1007
|
} catch (UnknownCdmTypeException e1) {
|
|
1008
|
switch (rankId){
|
|
1009
|
case 0: return null;
|
|
1010
|
case 1: return Rank.KINGDOM();
|
|
1011
|
case 3: return Rank.SUBKINGDOM();
|
|
1012
|
case 5: return Rank.PHYLUM();
|
|
1013
|
case 7: return Rank.SUBPHYLUM();
|
|
1014
|
case 8: return Rank.DIVISION();
|
|
1015
|
case 9: return Rank.SUBDIVISION();
|
|
1016
|
case 10: return Rank.CLASS();
|
|
1017
|
case 13: return Rank.SUBCLASS();
|
|
1018
|
case 16: return Rank.SUPERORDER();
|
|
1019
|
case 18: return Rank.ORDER();
|
|
1020
|
case 19: return Rank.SUBORDER();
|
|
1021
|
case 20: return Rank.FAMILY();
|
|
1022
|
case 25: return Rank.SUBFAMILY();
|
|
1023
|
case 30: return Rank.TRIBE();
|
|
1024
|
case 35: return Rank.SUBTRIBE();
|
|
1025
|
case 40: return Rank.GENUS();
|
|
1026
|
case 42: return Rank.SUBGENUS();
|
|
1027
|
case 45: return Rank.SECTION_BOTANY();
|
|
1028
|
case 47: return Rank.SUBSECTION_BOTANY();
|
|
1029
|
case 50: return Rank.SERIES();
|
|
1030
|
case 52: return Rank.SUBSERIES();
|
|
1031
|
case 58: return Rank.SPECIESAGGREGATE();
|
|
1032
|
case 59: return Rank.SPECIESGROUP();
|
|
1033
|
case 60: return Rank.SPECIES();
|
|
1034
|
case 61: return Rank.GREX_INFRASPEC();
|
|
1035
|
case 65: return Rank.SUBSPECIES();
|
|
1036
|
case 66: {System.out.println("Rank 66 not yet implemented"); throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());}
|
|
1037
|
case 67: {System.out.println("Rank 67 not yet implemented"); throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());}
|
|
1038
|
case 68: return Rank.CONVAR();
|
|
1039
|
case 70: return Rank.VARIETY();
|
|
1040
|
case 73: return Rank.SUBVARIETY();
|
|
1041
|
case 80: return Rank.FORM();
|
|
1042
|
case 82: return Rank.SUBFORM();
|
|
1043
|
case 84: return Rank.SPECIALFORM();
|
|
1044
|
case 98: return Rank.INFRAGENERICTAXON();
|
|
1045
|
case 99: return Rank.INFRASPECIFICTAXON();
|
|
1046
|
|
|
1047
|
case 750: return Rank.SUPERCLASS();
|
|
1048
|
case 780: return Rank.INFRACLASS();
|
|
1049
|
case 820: return Rank.INFRAORDER();
|
|
1050
|
|
|
1051
|
case 830: return Rank.SUPERFAMILY();
|
|
1052
|
|
|
1053
|
default: {
|
|
1054
|
Rank rank = rankId2NewRank(57, switchSpeciesGroup);
|
|
1055
|
if (rank != null){
|
|
1056
|
return rank;
|
|
1057
|
}
|
|
1058
|
if (useUnknown){
|
|
1059
|
logger.error("Rank unknown: " + rankId + ". Created UNKNOWN_RANK");
|
|
1060
|
return Rank.UNKNOWN_RANK();
|
|
1061
|
}
|
|
1062
|
throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());
|
|
1063
|
}
|
|
1064
|
}
|
|
1065
|
}
|
|
1066
|
}
|
|
1067
|
return result;
|
|
1068
|
} catch (SQLException e) {
|
|
1069
|
e.printStackTrace();
|
|
1070
|
logger.warn("Exception occurred. Created UNKNOWN_RANK instead");
|
|
1071
|
return Rank.UNKNOWN_RANK();
|
|
1072
|
}
|
|
1073
|
}
|
|
1074
|
|
|
1075
|
|
|
1076
|
public static Integer rank2RankId (Rank rank){
|
|
1077
|
if (rank == null){
|
|
1078
|
return null;
|
|
1079
|
}
|
|
1080
|
else if (rank.equals(Rank.KINGDOM())){ return 1;}
|
|
1081
|
else if (rank.equals(Rank.SUBKINGDOM())){ return 3;}
|
|
1082
|
else if (rank.equals(Rank.PHYLUM())){ return 5;}
|
|
1083
|
else if (rank.equals(Rank.SUBPHYLUM())){ return 7;}
|
|
1084
|
else if (rank.equals(Rank.DIVISION())){ return 8;}
|
|
1085
|
else if (rank.equals(Rank.SUBDIVISION())){ return 9;}
|
|
1086
|
|
|
1087
|
else if (rank.equals(Rank.CLASS())){ return 10;}
|
|
1088
|
else if (rank.equals(Rank.SUBCLASS())){ return 13;}
|
|
1089
|
else if (rank.equals(Rank.SUPERORDER())){ return 16;}
|
|
1090
|
else if (rank.equals(Rank.ORDER())){ return 18;}
|
|
1091
|
else if (rank.equals(Rank.SUBORDER())){ return 19;}
|
|
1092
|
else if (rank.equals(Rank.FAMILY())){ return 20;}
|
|
1093
|
else if (rank.equals(Rank.SUBFAMILY())){ return 25;}
|
|
1094
|
else if (rank.equals(Rank.TRIBE())){ return 30;}
|
|
1095
|
else if (rank.equals(Rank.SUBTRIBE())){ return 35;}
|
|
1096
|
else if (rank.equals(Rank.GENUS())){ return 40;}
|
|
1097
|
else if (rank.equals(Rank.SUBGENUS())){ return 42;}
|
|
1098
|
else if (rank.equals(Rank.SECTION_BOTANY())){ return 45;}
|
|
1099
|
else if (rank.equals(Rank.SUBSECTION_BOTANY())){ return 47;}
|
|
1100
|
else if (rank.equals(Rank.SERIES())){ return 50;}
|
|
1101
|
else if (rank.equals(Rank.SUBSERIES())){ return 52;}
|
|
1102
|
else if (rank.equals(Rank.SPECIESAGGREGATE())){ return 58;}
|
|
1103
|
//TODO
|
|
1104
|
// else if (rank.equals(Rank.XXX())){ return 59;}
|
|
1105
|
else if (rank.equals(Rank.SPECIES())){ return 60;}
|
|
1106
|
else if (rank.equals(Rank.SUBSPECIES())){ return 65;}
|
|
1107
|
else if (rank.equals(Rank.CONVAR())){ return 68;}
|
|
1108
|
else if (rank.equals(Rank.VARIETY())){ return 70;}
|
|
1109
|
else if (rank.equals(Rank.SUBVARIETY())){ return 73;}
|
|
1110
|
else if (rank.equals(Rank.FORM())){ return 80;}
|
|
1111
|
else if (rank.equals(Rank.SUBFORM())){ return 82;}
|
|
1112
|
else if (rank.equals(Rank.SPECIALFORM())){ return 84;}
|
|
1113
|
else if (rank.equals(Rank.INFRAGENERICTAXON())){ return 98;}
|
|
1114
|
else if (rank.equals(Rank.INFRASPECIFICTAXON())){ return 99;}
|
|
1115
|
|
|
1116
|
else if (rank.equals(Rank.SUPERCLASS())){ return 750;}
|
|
1117
|
else if (rank.equals(Rank.INFRACLASS())){ return 780;}
|
|
1118
|
else if (rank.equals(Rank.INFRAORDER())){ return 820;}
|
|
1119
|
else if (rank.equals(Rank.SUPERFAMILY())){ return 830;}
|
|
1120
|
|
|
1121
|
else {
|
|
1122
|
//TODO Exception
|
|
1123
|
logger.warn("Rank not yet supported in Berlin Model: "+ rank.getLabel());
|
|
1124
|
return null;
|
|
1125
|
}
|
|
1126
|
}
|
|
1127
|
|
|
1128
|
public static Integer textData2FactCategoryFk (Feature feature){
|
|
1129
|
if (feature == null){return null;}
|
|
1130
|
if (feature.equals(Feature.DESCRIPTION())){
|
|
1131
|
return 1;
|
|
1132
|
}else if (feature.equals(Feature.ECOLOGY())){
|
|
1133
|
return 4;
|
|
1134
|
}else if (feature.equals(Feature.PHENOLOGY())){
|
|
1135
|
return 5;
|
|
1136
|
}else if (feature.equals(Feature.COMMON_NAME())){
|
|
1137
|
return 12;
|
|
1138
|
}else if (feature.equals(Feature.OCCURRENCE())){
|
|
1139
|
return 13;
|
|
1140
|
}else if (feature.equals(Feature.CITATION())){
|
|
1141
|
return 99;
|
|
1142
|
}else{
|
|
1143
|
logger.debug("Unknown Feature.");
|
|
1144
|
return null;
|
|
1145
|
}
|
|
1146
|
}
|
|
1147
|
|
|
1148
|
|
|
1149
|
public static Integer taxonBase2statusFk (TaxonBase<?> taxonBase){
|
|
1150
|
if (taxonBase == null){return null;}
|
|
1151
|
if (taxonBase.isInstanceOf(Taxon.class)){
|
|
1152
|
return T_STATUS_ACCEPTED;
|
|
1153
|
}else if (taxonBase.isInstanceOf(Synonym.class)){
|
|
1154
|
return T_STATUS_SYNONYM;
|
|
1155
|
}else{
|
|
1156
|
logger.warn("Unknown ");
|
|
1157
|
return T_STATUS_UNRESOLVED;
|
|
1158
|
}
|
|
1159
|
//TODO
|
|
1160
|
// public static int T_STATUS_PARTIAL_SYN = 3;
|
|
1161
|
// public static int T_STATUS_PRO_PARTE_SYN = 4;
|
|
1162
|
// public static int T_STATUS_UNRESOLVED = 5;
|
|
1163
|
// public static int T_STATUS_ORPHANED = 6;
|
|
1164
|
}
|
|
1165
|
|
|
1166
|
public static Integer ref2refCategoryId (Reference ref){
|
|
1167
|
if (ref == null){
|
|
1168
|
return null;
|
|
1169
|
}
|
|
1170
|
else if (ref.getType().equals(ReferenceType.Article)){ return REF_ARTICLE;}
|
|
1171
|
else if (ref.getType().equals(ReferenceType.Section)){ return REF_PART_OF_OTHER_TITLE;}
|
|
1172
|
else if (ref.getType().equals(ReferenceType.Book)){ return REF_BOOK;}
|
|
1173
|
else if (ref.getType().equals(ReferenceType.Database)){return REF_DATABASE;}
|
|
1174
|
else if (ref.getType().equals(ReferenceType.WebPage)){ return REF_WEBSITE;}
|
|
1175
|
else if (ref.getType().equals(ReferenceType.CdDvd)){ return REF_CD;}
|
|
1176
|
else if (ref.getType().equals(ReferenceType.Journal)){ return REF_JOURNAL;}
|
|
1177
|
else if (ref.getType().equals(ReferenceType.Generic)){ return REF_UNKNOWN;}
|
|
1178
|
else if (ref.getType().equals(ReferenceType.PrintSeries)){
|
|
1179
|
logger.warn("Print Series is not a standard Berlin Model category");
|
|
1180
|
return REF_PRINT_SERIES;
|
|
1181
|
}
|
|
1182
|
else if (ref.getType().equals(ReferenceType.Proceedings)){
|
|
1183
|
logger.warn("Proceedings is not a standard Berlin Model category");
|
|
1184
|
return REF_CONFERENCE_PROCEEDINGS;
|
|
1185
|
}
|
|
1186
|
// else if (ref instanceof ){ return REF_JOURNAL_VOLUME;}
|
|
1187
|
else if (ref.getType().equals(ReferenceType.Patent)){ return REF_NOT_APPLICABLE;}
|
|
1188
|
else if (ref.getType().equals(ReferenceType.PersonalCommunication)){ return REF_INFORMAL;}
|
|
1189
|
else if (ref.getType().equals(ReferenceType.Report)){ return REF_NOT_APPLICABLE;}
|
|
1190
|
else if (ref.getType().equals(ReferenceType.Thesis)){ return REF_NOT_APPLICABLE;}
|
|
1191
|
else if (ref.getType().equals(ReferenceType.Report)){ return REF_NOT_APPLICABLE;}
|
|
1192
|
|
|
1193
|
else {
|
|
1194
|
//TODO Exception
|
|
1195
|
logger.warn("Reference type not yet supported in Berlin Model: "+ ref.getClass().getSimpleName());
|
|
1196
|
return null;
|
|
1197
|
}
|
|
1198
|
}
|
|
1199
|
|
|
1200
|
|
|
1201
|
public static Integer taxRelation2relPtQualifierFk (RelationshipBase<?,?,?> rel){
|
|
1202
|
if (rel == null){
|
|
1203
|
return null;
|
|
1204
|
}
|
|
1205
|
// else if (rel instanceof SynonymRelationship){
|
|
1206
|
// return ;
|
|
1207
|
// }else if (rel instanceof TaxonRelationship){
|
|
1208
|
RelationshipTermBase<?> type = rel.getType();
|
|
1209
|
if (type.equals(TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN())) {return TAX_REL_IS_INCLUDED_IN;
|
|
1210
|
}else if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {return TAX_REL_IS_MISAPPLIED_NAME_OF;
|
|
1211
|
}else if (type.equals(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR())) {return TAX_REL_IS_PRO_PARTE_MISAPPLIED_NAME_OF;
|
|
1212
|
}else if (type.equals(SynonymType.SYNONYM_OF())) {return TAX_REL_IS_SYNONYM_OF;
|
|
1213
|
}else if (type.equals(SynonymType.HOMOTYPIC_SYNONYM_OF())) {return TAX_REL_IS_HOMOTYPIC_SYNONYM_OF;
|
|
1214
|
}else if (type.equals(SynonymType.HETEROTYPIC_SYNONYM_OF())) {return TAX_REL_IS_HETEROTYPIC_SYNONYM_OF;
|
|
1215
|
}else if (type.equals(TaxonRelationshipType.CONGRUENT_TO())) {return 11;
|
|
1216
|
// public static int TAX_REL_IS_PROPARTE_SYN_OF = 4;
|
|
1217
|
// public static int TAX_REL_IS_PARTIAL_SYN_OF = 5;
|
|
1218
|
// public static int TAX_REL_IS_PROPARTE_HOMOTYPIC_SYNONYM_OF = 101;
|
|
1219
|
// public static int TAX_REL_IS_PROPARTE_HETEROTYPIC_SYNONYM_OF = 102;
|
|
1220
|
// public static int TAX_REL_IS_PARTIAL_HOMOTYPIC_SYNONYM_OF = 103;
|
|
1221
|
// public static int TAX_REL_IS_PARTIAL_HETEROTYPIC_SYNONYM_OF = 104;
|
|
1222
|
|
|
1223
|
}else {
|
|
1224
|
//TODO Exception
|
|
1225
|
logger.warn("Relationship type not yet supported by Berlin Model export: "+ rel.getType());
|
|
1226
|
return null;
|
|
1227
|
}
|
|
1228
|
}
|
|
1229
|
|
|
1230
|
public static Integer nomStatus2nomStatusFk (NomenclaturalStatusType status){
|
|
1231
|
if (status == null){
|
|
1232
|
return null;
|
|
1233
|
}
|
|
1234
|
if (status.equals(NomenclaturalStatusType.INVALID())) {return NAME_ST_NOM_INVAL;
|
|
1235
|
}else if (status.equals(NomenclaturalStatusType.ILLEGITIMATE())) {return NAME_ST_NOM_ILLEG;
|
|
1236
|
}else if (status.equals(NomenclaturalStatusType.NUDUM())) {return NAME_ST_NOM_NUD;
|
|
1237
|
}else if (status.equals(NomenclaturalStatusType.REJECTED())) {return NAME_ST_NOM_REJ;
|
|
1238
|
}else if (status.equals(NomenclaturalStatusType.REJECTED_PROP())) {return NAME_ST_NOM_REJ_PROP;
|
|
1239
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED())) {return NAME_ST_NOM_UTIQUE_REJ;
|
|
1240
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED_PROP())) {return NAME_ST_NOM_UTIQUE_REJ_PROP;
|
|
1241
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED())) {return NAME_ST_NOM_CONS;
|
|
1242
|
|
|
1243
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED_PROP())) {return NAME_ST_NOM_CONS_PROP;
|
|
1244
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED())) {return NAME_ST_ORTH_CONS;
|
|
1245
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP())) {return NAME_ST_ORTH_CONS_PROP;
|
|
1246
|
}else if (status.equals(NomenclaturalStatusType.SUPERFLUOUS())) {return NAME_ST_NOM_SUPERFL;
|
|
1247
|
}else if (status.equals(NomenclaturalStatusType.AMBIGUOUS())) {return NAME_ST_NOM_AMBIG;
|
|
1248
|
}else if (status.equals(NomenclaturalStatusType.PROVISIONAL())) {return NAME_ST_NOM_PROVIS;
|
|
1249
|
}else if (status.equals(NomenclaturalStatusType.DOUBTFUL())) {return NAME_ST_NOM_DUB;
|
|
1250
|
}else if (status.equals(NomenclaturalStatusType.NOVUM())) {return NAME_ST_NOM_NOV;
|
|
1251
|
|
|
1252
|
}else if (status.equals(NomenclaturalStatusType.CONFUSUM())) {return NAME_ST_NOM_CONFUS;
|
|
1253
|
}else if (status.equals(NomenclaturalStatusType.ALTERNATIVE())) {return NAME_ST_NOM_ALTERN;
|
|
1254
|
}else if (status.equals(NomenclaturalStatusType.COMBINATION_INVALID())) {return NAME_ST_COMB_INVAL;
|
|
1255
|
//TODO
|
|
1256
|
}else {
|
|
1257
|
//TODO Exception
|
|
1258
|
logger.warn("NomStatus type not yet supported by Berlin Model export: "+ status);
|
|
1259
|
return null;
|
|
1260
|
}
|
|
1261
|
}
|
|
1262
|
|
|
1263
|
|
|
1264
|
|
|
1265
|
public static Integer nameRel2RelNameQualifierFk (RelationshipBase<?,?,?> rel){
|
|
1266
|
if (rel == null){
|
|
1267
|
return null;
|
|
1268
|
}
|
|
1269
|
RelationshipTermBase<?> type = rel.getType();
|
|
1270
|
if (type.equals(NameRelationshipType.BASIONYM())) {return NAME_REL_IS_BASIONYM_FOR;
|
|
1271
|
}else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {return NAME_REL_IS_LATER_HOMONYM_OF;
|
|
1272
|
}else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {return NAME_REL_IS_REPLACED_SYNONYM_FOR;
|
|
1273
|
//TODO
|
|
1274
|
}else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {return NAME_REL_IS_VALIDATION_OF;
|
|
1275
|
}else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {return NAME_REL_IS_LATER_VALIDATION_OF;
|
|
1276
|
}else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {return NAME_REL_IS_CONSERVED_AGAINST;
|
|
1277
|
|
|
1278
|
|
|
1279
|
}else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {return NAME_REL_IS_TREATED_AS_LATER_HOMONYM_OF;
|
|
1280
|
}else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {return NAME_REL_IS_ORTHOGRAPHIC_VARIANT_OF;
|
|
1281
|
}else {
|
|
1282
|
//TODO Exception
|
|
1283
|
logger.warn("Relationship type not yet supported by Berlin Model export: "+ rel.getType());
|
|
1284
|
return null;
|
|
1285
|
}
|
|
1286
|
|
|
1287
|
//NameRelationShip
|
|
1288
|
|
|
1289
|
// }else if (type.equals(NameRelationshipType.())) {return NAME_REL_IS_REJECTED_IN_FAVOUR_OF;
|
|
1290
|
|
|
1291
|
// public static int NAME_REL_IS_FIRST_PARENT_OF = 9;
|
|
1292
|
// public static int NAME_REL_IS_SECOND_PARENT_OF = 10;
|
|
1293
|
// public static int NAME_REL_IS_FEMALE_PARENT_OF = 11;
|
|
1294
|
// public static int NAME_REL_IS_MALE_PARENT_OF = 12;
|
|
1295
|
//
|
|
1296
|
// public static int NAME_REL_IS_REJECTED_IN_FAVOUR_OF = 14;
|
|
1297
|
// }else if (type.equals(NameRelationshipType.)) {return NAME_REL_IS_REJECTED_TYPE_OF;
|
|
1298
|
//
|
|
1299
|
// public static int NAME_REL_HAS_SAME_TYPE_AS = 18;
|
|
1300
|
// public static int NAME_REL_IS_LECTOTYPE_OF = 61;
|
|
1301
|
// public static int NAME_REL_TYPE_NOT_DESIGNATED = 62;
|
|
1302
|
|
|
1303
|
// }else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {return NAME_REL_IS_TYPE_OF;
|
|
1304
|
|
|
1305
|
|
|
1306
|
}
|
|
1307
|
|
|
1308
|
public static UUID getWebMarkerUuid (int markerCategoryId){
|
|
1309
|
if (markerCategoryId == 1){
|
|
1310
|
return UUID.fromString("d8554418-d1ae-471d-a1bd-a0cbc7ab860c"); //any as not to find in cichorieae
|
|
1311
|
}else if (markerCategoryId == 2){
|
|
1312
|
return UUID.fromString("7f189c48-8632-4870-9ec8-e4d2489f324e");
|
|
1313
|
}else if (markerCategoryId == 3){
|
|
1314
|
return UUID.fromString("9a115e6b-8210-4dd3-825a-6fed11016c63");
|
|
1315
|
}else if (markerCategoryId == 4){
|
|
1316
|
return UUID.fromString("1d287011-2054-41c5-a919-17ac1d0a9270");
|
|
1317
|
}else if (markerCategoryId == 9){
|
|
1318
|
return UUID.fromString("cc5eca5c-1ae5-4feb-9a95-507fc167b0c9");
|
|
1319
|
//Salvador
|
|
1320
|
}else if (markerCategoryId == 5){
|
|
1321
|
return UUID.fromString("7d8875b3-107c-4189-97e5-cadb470e543a");
|
|
1322
|
}else if (markerCategoryId == 20){
|
|
1323
|
return UUID.fromString("3574e2b0-6431-4d71-b456-bc967c80f622");
|
|
1324
|
}else if (markerCategoryId == 30){
|
|
1325
|
return UUID.fromString("9924b27e-0dbe-4d95-ae9b-096fbbc3edcb");
|
|
1326
|
}else if (markerCategoryId == 40){
|
|
1327
|
return UUID.fromString("69241b97-f4d2-4f60-9aed-1c4ccb5bced5");
|
|
1328
|
}else if (markerCategoryId == 50){
|
|
1329
|
return UUID.fromString("f3b62ce3-0212-4542-a74c-0c68d08859b1");
|
|
1330
|
}else if (markerCategoryId == 55){
|
|
1331
|
return UUID.fromString("bec822f2-8242-425f-ad46-f11f0b82f69b");
|
|
1332
|
}else if (markerCategoryId == 60){
|
|
1333
|
return UUID.fromString("722fca60-0416-4bf0-aa4b-a07400f9710d");
|
|
1334
|
}else if (markerCategoryId == 70){
|
|
1335
|
return UUID.fromString("ed57857b-1001-4b09-b48e-d88ab146bb2b");
|
|
1336
|
}else if (markerCategoryId == 80){
|
|
1337
|
return UUID.fromString("637e8b77-1202-462b-9d77-1023f3c192d9");
|
|
1338
|
}else if (markerCategoryId == 90){
|
|
1339
|
return UUID.fromString("c769c231-6e76-46df-88f7-2c459342a3c2");
|
|
1340
|
}else if (markerCategoryId == 93){
|
|
1341
|
return UUID.fromString("075ee97e-246f-4f3d-aa96-16930df6268c");
|
|
1342
|
}else if (markerCategoryId == 100){
|
|
1343
|
return UUID.fromString("e17065bf-3e44-417a-b05c-f82929f680c3");
|
|
1344
|
}else if (markerCategoryId == 110){
|
|
1345
|
return UUID.fromString("e2b8de07-770e-4fda-b445-c4735f4e95c8");
|
|
1346
|
}else if (markerCategoryId == 900){
|
|
1347
|
return UUID.fromString("d029c3c9-944a-4bb9-bba6-12c95da94a04");
|
|
1348
|
}else if (markerCategoryId == 920){
|
|
1349
|
return UUID.fromString("98af97b1-e5e3-4ee4-902e-15032316bfc3");
|
|
1350
|
}else if (markerCategoryId == 930){
|
|
1351
|
return UUID.fromString("4b6c3130-4e50-4f45-8461-d2698cf5f80b");
|
|
1352
|
}else if (markerCategoryId == 950){
|
|
1353
|
return UUID.fromString("1e53f58c-6528-42c6-99ae-0f75a3c3c264");
|
|
1354
|
}else if (markerCategoryId == 960){
|
|
1355
|
return UUID.fromString("1903d460-94cc-4fc4-b2a8-a3fb0cfd69a0");
|
|
1356
|
}else{
|
|
1357
|
logger.warn("Unknown webMarker category: " + markerCategoryId);
|
|
1358
|
return null;
|
|
1359
|
}
|
|
1360
|
|
|
1361
|
}
|
|
1362
|
|
|
1363
|
}
|