Revision f2716206
Added by Katja Luther almost 6 years ago
| cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceTest.java | ||
|---|---|---|
| 926 | 926 |
UUID derivedUnit1Uuid = UUID.fromString("843bc8c9-c0fe-4735-bf40-82f1996dcefb");
|
| 927 | 927 |
UUID derivedUnit2Uuid = UUID.fromString("40cd9cb1-7c74-4e7d-a1f8-8a1e0314e940");
|
| 928 | 928 |
UUID dnaSampleUuid = UUID.fromString("364969a6-2457-4e2e-ae1e-29a6fcaa741a");
|
| 929 |
UUID dnaSampleWithSequenceUuid = UUID.fromString("571d4e9a-0736-4da3-ad4a-a2df427a1f01");
|
|
| 929 | 930 |
UUID tissueUuid = UUID.fromString("b608613c-1b5a-4882-8b14-d643b6fc5998");
|
| 930 | 931 |
|
| 931 | 932 |
UUID taxonUuid = UUID.fromString("dfca7629-8a60-4d51-998d-371897f725e9");
|
| ... | ... | |
| 999 | 1000 |
SpecimenOrObservationBase derivedUnit2 = occurrenceService.load(derivedUnit2Uuid); |
| 1000 | 1001 |
SpecimenOrObservationBase tissue = occurrenceService.load(tissueUuid); |
| 1001 | 1002 |
SpecimenOrObservationBase dnaSample = occurrenceService.load(dnaSampleUuid); |
| 1003 |
SpecimenOrObservationBase dnaSampleWithSequence = occurrenceService.load(dnaSampleWithSequenceUuid); |
|
| 1002 | 1004 |
Taxon taxon = (Taxon) taxonService.load(taxonUuid); |
| 1003 | 1005 |
|
| 1004 | 1006 |
assertNotNull(derivedUnit1); |
| ... | ... | |
| 1010 | 1012 |
// wildcard search => all derivates |
| 1011 | 1013 |
FindOccurrencesConfigurator config = new FindOccurrencesConfigurator(); |
| 1012 | 1014 |
config.setTitleSearchString("*");
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| 1013 |
assertEquals(4, occurrenceService.countOccurrences(config));
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|
| 1015 |
assertEquals(5, occurrenceService.countOccurrences(config));
|
|
| 1014 | 1016 |
List<SpecimenOrObservationBase> allDerivates = occurrenceService.findByTitle(config).getRecords(); |
| 1015 |
assertEquals(4, allDerivates.size());
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|
| 1017 |
assertEquals(5, allDerivates.size());
|
|
| 1016 | 1018 |
assertTrue(allDerivates.contains(derivedUnit1)); |
| 1017 | 1019 |
assertTrue(allDerivates.contains(derivedUnit2)); |
| 1018 | 1020 |
assertTrue(allDerivates.contains(tissue)); |
| ... | ... | |
| 1031 | 1033 |
// class search => 4 results |
| 1032 | 1034 |
config = new FindOccurrencesConfigurator(); |
| 1033 | 1035 |
config.setClazz(SpecimenOrObservationBase.class); |
| 1034 |
assertEquals(4, occurrenceService.countOccurrences(config));
|
|
| 1036 |
assertEquals(5, occurrenceService.countOccurrences(config));
|
|
| 1035 | 1037 |
List<SpecimenOrObservationBase> specimenOrObservationBases = occurrenceService.findByTitle(config).getRecords(); |
| 1036 |
assertEquals(4, specimenOrObservationBases.size());
|
|
| 1038 |
assertEquals(5, specimenOrObservationBases.size());
|
|
| 1037 | 1039 |
|
| 1038 | 1040 |
// class search => 0 results |
| 1039 | 1041 |
config = new FindOccurrencesConfigurator(); |
| ... | ... | |
| 1045 | 1047 |
// class search => 4 results |
| 1046 | 1048 |
config = new FindOccurrencesConfigurator(); |
| 1047 | 1049 |
config.setClazz(DerivedUnit.class); |
| 1048 |
assertEquals(4, occurrenceService.countOccurrences(config));
|
|
| 1050 |
assertEquals(5, occurrenceService.countOccurrences(config));
|
|
| 1049 | 1051 |
List<SpecimenOrObservationBase> derivedUnits = occurrenceService.findByTitle(config).getRecords(); |
| 1050 |
assertEquals(4, derivedUnits.size());
|
|
| 1052 |
assertEquals(5, derivedUnits.size());
|
|
| 1051 | 1053 |
assertTrue(derivedUnits.contains(derivedUnit1)); |
| 1052 | 1054 |
assertTrue(derivedUnits.contains(derivedUnit2)); |
| 1053 | 1055 |
assertTrue(derivedUnits.contains(tissue)); |
| ... | ... | |
| 1122 | 1124 |
//all specimen |
| 1123 | 1125 |
config = new FindOccurrencesConfigurator(); |
| 1124 | 1126 |
config.setAssignmentStatus(AssignmentStatus.ALL_SPECIMENS); |
| 1125 |
assertEquals(4, occurrenceService.countOccurrences(config));
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|
| 1127 |
assertEquals(5, occurrenceService.countOccurrences(config));
|
|
| 1126 | 1128 |
List<SpecimenOrObservationBase> allSpecimens = occurrenceService.findByTitle(config).getRecords(); |
| 1127 |
assertEquals(4, allSpecimens.size());
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|
| 1129 |
assertEquals(5, allSpecimens.size());
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|
| 1128 | 1130 |
assertTrue(allSpecimens.contains(derivedUnit1)); |
| 1129 | 1131 |
assertTrue(allSpecimens.contains(derivedUnit2)); |
| 1130 | 1132 |
assertTrue(allSpecimens.contains(tissue)); |
| ... | ... | |
| 1142 | 1144 |
//unassigned specimen |
| 1143 | 1145 |
config = new FindOccurrencesConfigurator(); |
| 1144 | 1146 |
config.setAssignmentStatus(AssignmentStatus.UNASSIGNED_SPECIMENS); |
| 1145 |
assertEquals(2, occurrenceService.countOccurrences(config));
|
|
| 1147 |
assertEquals(3, occurrenceService.countOccurrences(config));
|
|
| 1146 | 1148 |
List<SpecimenOrObservationBase> unAssignedSpecimens = occurrenceService.findByTitle(config).getRecords(); |
| 1147 |
assertEquals(2, unAssignedSpecimens.size());
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|
| 1149 |
assertEquals(3, unAssignedSpecimens.size());
|
|
| 1148 | 1150 |
assertTrue(unAssignedSpecimens.contains(derivedUnit2)); |
| 1149 | 1151 |
assertTrue(unAssignedSpecimens.contains(dnaSample)); |
| 1150 | 1152 |
|
| ... | ... | |
| 1159 | 1161 |
assertTrue(ignoreAssignmentStatusSpecimens.contains(tissue)); |
| 1160 | 1162 |
|
| 1161 | 1163 |
|
| 1164 |
|
|
| 1165 |
List<DerivedUnit> findByAccessionNumber = occurrenceService.findByAccessionNumber("ACC_DNA", 10, 1, null, null);
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|
| 1166 |
|
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| 1167 |
assertEquals(1, findByAccessionNumber.size()); |
|
| 1168 |
// assertTrue(findByAccessionNumber.contains(derivedUnit1)); |
|
| 1169 |
assertTrue(findByAccessionNumber.contains(dnaSampleWithSequence)); |
|
| 1170 |
|
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| 1171 |
|
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| 1162 | 1172 |
} |
| 1163 | 1173 |
|
| 1164 | 1174 |
@Test |
Also available in: Unified diff
fix #7433: get specimen by genetic accession number