EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.strategy.merge;

import java.net.URI;

import java.time.ZoneId;

import java.time.ZonedDateTime;

import java.util.HashSet;

import java.util.Set;

import java.util.UUID;

import org.apache.log4j.Logger;

import org.junit.After;

import org.junit.AfterClass;

import org.junit.Assert;

import org.junit.Before;

import org.junit.BeforeClass;

import org.junit.Test;

import eu.etaxonomy.cdm.model.agent.Address;

import eu.etaxonomy.cdm.model.agent.Contact;

import eu.etaxonomy.cdm.model.agent.Institution;

import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.agent.Team;

import eu.etaxonomy.cdm.model.common.Annotation;

import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;

import eu.etaxonomy.cdm.model.common.LSID;

import eu.etaxonomy.cdm.model.common.TimePeriod;

import eu.etaxonomy.cdm.model.description.TaxonNameDescription;

import eu.etaxonomy.cdm.model.location.Country;

import eu.etaxonomy.cdm.model.location.Point;

import eu.etaxonomy.cdm.model.location.ReferenceSystem;

import eu.etaxonomy.cdm.model.name.NameRelationship;

import eu.etaxonomy.cdm.model.name.NameRelationshipType;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.name.TaxonNameFactory;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.model.taxon.Taxon;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

import eu.etaxonomy.cdm.strategy.cache.reference.INomenclaturalReferenceCacheStrategy;

/**

 * @author a.mueller

 * @created 03.08.2009

 */

public class DefaultMergeStrategyTest {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(DefaultMergeStrategyTest.class);

	private DefaultMergeStrategy bookMergeStrategy;

	private Reference book1;

	private String editionString1 ="Ed.1";

	private String volumeString1 ="Vol.1";

	private Team team1;

	private Reference printSeries1;

	private Annotation annotation1;

	private String title1 = "Title1";

	private TimePeriod datePublished1 = TimePeriod.NewInstance(2000);

	private int hasProblem1 = 1;

	private LSID lsid1;

	private Reference book2;

	private String editionString2 ="Ed.2";

	private String volumeString2 ="Vol.2";

	private Team team2;

	private Reference printSeries2;

	private Annotation annotation2;

	private String annotationString2;

	private String title2 = "Title2";

	private ZonedDateTime created2 = ZonedDateTime.of(1999, 3, 1, 0, 0, 0, 0, ZoneId.systemDefault());

	private TimePeriod datePublished2 = TimePeriod.NewInstance(2002);

	private int hasProblem2 = 1;

	private LSID lsid2;

	private Reference book3;

	/**

	 * @throws java.lang.Exception

	 */

	@BeforeClass

	public static void setUpBeforeClass() throws Exception {

		DefaultTermInitializer termInitializer = new DefaultTermInitializer();

		termInitializer.initialize();

	}

	/**

	 * @throws java.lang.Exception

	 */

	@AfterClass

	public static void tearDownAfterClass() throws Exception {

	}

	/**

	 * @throws java.lang.Exception

	 */

	@Before

	public void setUp() throws Exception {

		bookMergeStrategy = DefaultMergeStrategy.NewInstance(Reference.class);

		team1 = Team.NewInstance();

		team1.setTitleCache("Team1", true);

		team2 = Team.NewInstance();

		team2.setTitleCache("Team2", true);

		printSeries1 = ReferenceFactory.newPrintSeries("Series1");

		printSeries2 = ReferenceFactory.newPrintSeries("Series2");

		annotation1 = Annotation.NewInstance("Annotation1", null);

		annotationString2 = "Annotation2";

		annotation2 = Annotation.NewInstance(annotationString2, null);

		book1 = ReferenceFactory.newBook();

		book1.setAuthorship(team1);

		book1.setTitle(title1);

		book1.setEdition(editionString1);

		book1.setVolume(volumeString1);

		book1.setInReference(printSeries1);

		book1.addAnnotation(annotation1);

		book1.setDatePublished(datePublished1);

		book1.setParsingProblem(hasProblem1);

		lsid1 = new LSID("authority1", "namespace1", "object1", "revision1");

		book1.setLsid(lsid1);

		book1.setNomenclaturallyRelevant(false);

		book2 = ReferenceFactory.newBook();

		book2.setAuthorship(team2);

		book2.setTitle(title2);

		book2.setEdition(editionString2);

		book2.setVolume(volumeString2);

		book2.setInReference(printSeries2);

		book2.addAnnotation(annotation2);

		book2.setCreated(created2);

		book2.setDatePublished(datePublished2);

		book2.setParsingProblem(hasProblem2);

		lsid2 = new LSID("authority2", "namespace2", "object2", "revision2");

		book2.setLsid(lsid2);

		book2.setNomenclaturallyRelevant(true);

	}

	/**

	 * @throws java.lang.Exception

	 */

	@After

	public void tearDown() throws Exception {

	}

//********************* TEST *********************************************/

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#NewInstance(java.lang.Class)}.

	 */

	@Test

	public void testNewInstance() {

		Assert.assertNotNull(bookMergeStrategy);

		Assert.assertEquals(Reference.class, bookMergeStrategy.getMergeClass());

	}

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#getMergeMode(java.lang.String)}.

	 */

	@Test

	public void testGetMergeMode() {

		Assert.assertEquals("Merge mode for title should be MergeMode.FIRST", MergeMode.FIRST, bookMergeStrategy.getMergeMode("title"));

	}

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#getMergeMode(java.lang.String)}.

	 */

	@Test

	public void testGetSetMergeMode() {

		//legal value

		try {

			bookMergeStrategy.setMergeMode("edition", MergeMode.SECOND);

			Assert.assertEquals("Merge mode for edition should be", MergeMode.SECOND, bookMergeStrategy.getMergeMode("edition"));

		} catch (MergeException e1) {

			Assert.fail();

		}

		//illegalValue

		try {

			bookMergeStrategy.setMergeMode("xxx", MergeMode.SECOND);

			Assert.fail("A property name must exist, otherwise an exception must be thrown");

		} catch (Exception e) {

			//ok

		}

		//illegalValue

		try {

			bookMergeStrategy.setMergeMode("cacheStrategy", MergeMode.SECOND);

			Assert.fail("CacheStrategy is transient and therefore not a legal merge parameter");

		} catch (Exception e) {

			//ok

		}

		//illegalValue

		try {

			bookMergeStrategy.setMergeMode("id", MergeMode.SECOND);

			Assert.fail("Identifier merge mode must always be MergeMode.FIRST");

		} catch (Exception e) {

			//ok

		}

		//illegalValue

		try {

			bookMergeStrategy.setMergeMode("uuid", MergeMode.SECOND);

			Assert.fail("Identifier merge mode must always be MergeMode.FIRST");

		} catch (Exception e) {

			//ok

		}

	}

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#invoke(eu.etaxonomy.cdm.strategy.merge.IMergable, eu.etaxonomy.cdm.strategy.merge.IMergable)}.

	 * @throws MergeException

	 */

	@Test

	public void testInvokeReferences() throws MergeException {

		INomenclaturalReferenceCacheStrategy cacheStrategy1 = book1.getCacheStrategy();

		int id = book1.getId();

		UUID uuid = book1.getUuid();

		try {

			bookMergeStrategy.setMergeMode("edition", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("volume", MergeMode.NULL);

			bookMergeStrategy.setMergeMode("authorship", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("created", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("updated",MergeMode.NULL);

			bookMergeStrategy.setMergeMode("datePublished", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("parsingProblem", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("inReference", MergeMode.SECOND);

			bookMergeStrategy.setMergeMode("lsid", MergeMode.SECOND);

			bookMergeStrategy.invoke(book1, book2);

		} catch (MergeException e) {

			throw e;

			//Assert.fail("An unexpected merge exception occurred: " + e.getMessage() + ";" + e.getCause().getMessage());

		}

		Assert.assertEquals("Title should stay the same", title1, book1.getTitle());

		Assert.assertEquals("Edition should become edition 2", editionString2, book1.getEdition());

		Assert.assertNull("Volume should be null", book1.getVolume());

		//Boolean

		Assert.assertEquals("Has problem must be hasProblem2", hasProblem2, book1.getParsingProblem());

		Assert.assertEquals("nomenclaturally relevant must have value true (AND semantics)", true, book1.isNomenclaturallyRelevant() );

		//CdmBase

		Assert.assertSame("Authorship must be the one of book2", team2, book1.getAuthorship());

		Assert.assertSame("In Series must be the one of book2", printSeries2, book1.getInReference());

		//Transient

		Assert.assertSame("Cache strategy is transient and shouldn't change therefore", cacheStrategy1, book1.getCacheStrategy());

		//UserType

		System.out.println(created2.toString());

		System.out.println(book1.getCreated().toString());

		//TODO: Why does assertSame does not work??

		Assert.assertEquals("Created must be created2", created2, book1.getCreated());

		//TODO updated should have the actual date if any value has changed

		Assert.assertSame("Created must be created2", null, book1.getUpdated());

		Assert.assertSame("Created must be datePublsihed2", datePublished2, book1.getDatePublished());

		//TODO this may not be correct

		Assert.assertSame("LSID must be LSID2", lsid2, book1.getLsid());

		//TODO

		//	book1.setProblemEnds(end);

		//	book1.setProtectedTitleCache(protectedTitleCache);

		//annotations -> ADD_CLONE

		Assert.assertEquals("Annotations should contain annotations of both books", 2, book1.getAnnotations().size());

		boolean cloneExists = false;

		for (Annotation annotation : book1.getAnnotations()){

			if (annotation == this.annotation2){

				//Hibernate will not persist the exact same object. Probably this is a bug (the according row in the

				//M:M table is not deleted and a unique constraints does not allow adding 2 rows with the same annotation_id

				//This test can be changed once this bug does not exist anymore

				Assert.fail("Book1 should contain a clone of annotation2 but contains annotation2 itself");

			}else if (annotationString2.equals(annotation.getText())){

				cloneExists = true;

			}

		}

		Assert.assertTrue("Book1 should contain a clone of annotation2", cloneExists);

	//	Assert.assertEquals("Annotations from book2 should be deleted", 0, book2.getAnnotations().size());

		//identifier

		Assert.assertSame("Identifier must never be changed", id, book1.getId());

		Assert.assertSame("Identifier must never be changed", uuid, book1.getUuid());

		//Test Thesis

		Institution school1 = Institution.NewInstance();

		Institution school2 = Institution.NewInstance();

		Reference thesis1 = ReferenceFactory.newThesis();

		thesis1.setSchool(school1);

		//Thesis thesis1 = Thesis.NewInstance(school1);

		Reference thesis2 = ReferenceFactory.newThesis();

		thesis2.setSchool(school2);

		DefaultMergeStrategy thesisStrategy = DefaultMergeStrategy.NewInstance(Reference.class);

		thesisStrategy.setMergeMode("school", MergeMode.SECOND);

		thesisStrategy.invoke(thesis1, thesis2);

		Assert.assertSame("school must be school2", school2, thesis1.getSchool());

	}

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#invoke(eu.etaxonomy.cdm.strategy.merge.IMergable, eu.etaxonomy.cdm.strategy.merge.IMergable)}.

	 * @throws MergeException

	 */

	@Test

	//@Ignore

	public void testInvokeTxonNames() throws MergeException {

		IMergeStrategy botNameMergeStrategy = DefaultMergeStrategy.NewInstance(TaxonName.class);

		TaxonName botName1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());

		TaxonName botName2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());

		TaxonName botName3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());

		botName1.setGenusOrUninomial("Genus1");

		botName1.setSpecificEpithet("species1");

		botName1.setAnamorphic(true);

		botName2.setGenusOrUninomial("Genus2");

		botName2.setSpecificEpithet("species2");

		botName2.setAnamorphic(false);

		//name relations

		botName2.addBasionym(botName3, book1, "p.22", null);

		DerivedUnit specimen1 = DerivedUnit.NewPreservedSpecimenInstance();

		botName2.addSpecimenTypeDesignation(specimen1, SpecimenTypeDesignationStatus.HOLOTYPE(), book2, "p.56", "originalNameString", false, true);

		//descriptions

		TaxonNameDescription description1 = TaxonNameDescription.NewInstance();

		botName1.addDescription(description1);

		TaxonNameDescription description2 = TaxonNameDescription.NewInstance();

		botName1.addDescription(description2);

		//authors

		Team team1 = Team.NewInstance();

		Team team2 = Team.NewInstance();

		Person person1 = Person.NewInstance();

		botName1.setCombinationAuthorship(team1);

		botName2.setCombinationAuthorship(team2);

		//taxa

		TaxonBase<?> taxon1= Taxon.NewInstance(botName1, book1);

		TaxonBase<?> taxon2= Taxon.NewInstance(botName2, book2);

		try {

			botNameMergeStrategy.setMergeMode("combinationAuthorship", MergeMode.SECOND);

			botNameMergeStrategy.setMergeMode("anamorphic", MergeMode.AND);

//			botNameMergeStrategy.invoke(botName1, botName2);

		} catch (MergeException e) {

			throw e;

			//Assert.fail("An unexpected merge exception occurred: " + e.getMessage() + ";" + e.getCause().getMessage());

		}

		//Boolean

		Assert.assertEquals("Is anamorphic must be false", true && false, botName2.isAnamorphic());

		//NameRelations

		Set<NameRelationship> toRelations = botName2.getRelationsToThisName();

		Set<NameRelationship> basionymRelations = new HashSet<NameRelationship>();

		for (NameRelationship toRelation : toRelations){

			if (toRelation.getType().equals(NameRelationshipType.BASIONYM())){

				basionymRelations.add(toRelation);

			}

		}

		Assert.assertEquals("Number of basionyms must be 1", 1, basionymRelations.size());

		Assert.assertEquals("Basionym must have same reference", book1, basionymRelations.iterator().next().getCitation());

		//TODO merge relation if matches() = true

		//Types

		Assert.assertEquals("Number of specimen type designations must be 1", 1, botName2.getSpecimenTypeDesignations().size());

		//TODO add to all names etc.

		//Description

		Assert.assertEquals("Number of descriptions must be 2", 2, botName1.getDescriptions().size());

		//Authorships

		Assert.assertEquals("Combination author must be combination author 1", team1, botName1.getCombinationAuthorship());

		//Taxa

		Assert.assertEquals("TaxonName of taxon1 must be name1", botName1, taxon1.getName());

		Assert.assertEquals("TaxonName of taxon2 must be name2", botName2, taxon2.getName());

	}

	/**

	 * Test method for {@link eu.etaxonomy.cdm.strategy.merge.DefaultMergeStrategy#invoke(eu.etaxonomy.cdm.strategy.merge.IMergable, eu.etaxonomy.cdm.strategy.merge.IMergable)}.

	 * @throws MergeException

	 */

	@Test

	public void testInvokeAgents() throws MergeException {

		IMergeStrategy teamMergeStrategy = DefaultMergeStrategy.NewInstance(Team.class);

		Team team1 = Team.NewInstance();

		Team team2 = Team.NewInstance();

		Team team3 = Team.NewInstance();

		Person person1 = Person.NewTitledInstance("person1");

		Person person2 = Person.NewTitledInstance("person2");

		Person person3 = Person.NewTitledInstance("person3");

		team1.setTitleCache("Team1", true);

		team1.setNomenclaturalTitle("T.1");

		String street1 = "Strasse1";

		team1.setContact(Contact.NewInstance(street1, "12345", "Berlin", Country.ARGENTINAARGENTINEREPUBLIC(),"pobox" , "Region", "a@b.de", "f12345", "+49-30-123456", URI.create("www.abc.de"), Point.NewInstance(2.4, 3.2, ReferenceSystem.WGS84(), 3)));

		team2.setContact(Contact.NewInstance("Street2", null, "London", null, null, null, null, "874599873", null, null, null));

		String street3 = "Street3";

		team2.addAddress(street3, null, null, null, null, null, Point.NewInstance(1.1, 2.2, null, 4));

		String emailAddress1 = "Email1";

		team1.addEmailAddress(emailAddress1);

		team2.addTeamMember(person1);

		team2.addTeamMember(person2);

		String emailAddress2 = "Email2";

		team2.addEmailAddress(emailAddress2);

		team3.addTeamMember(person3);

		team3.addEmailAddress("emailAddress3");

		teamMergeStrategy.invoke(team2, team3);

		Assert.assertEquals("Team2 must have 3 persons as members",3, team2.getTeamMembers().size());

		Assert.assertTrue("Team2 must have person3 as new member", team2.getTeamMembers().contains(person3));

		Assert.assertSame("Team2 must have person3 as third member",person3, team2.getTeamMembers().get(2));

		//Contact

		teamMergeStrategy.invoke(team2, team1);

		Contact team2Contact = team2.getContact();

		Assert.assertNotNull("team2Contact must not be null", team2Contact);

		Assert.assertNotNull("Addresses must not be null", team2Contact.getAddresses());

		Assert.assertEquals("Number of addresses must be 3", 3, team2Contact.getAddresses().size());

		Assert.assertEquals("Number of email addresses must be 4", 4, team2Contact.getEmailAddresses().size());

		boolean street1Exists = false;

		boolean street3Exists = false;

		boolean country1Exists = false;

		for  (Address address : team2Contact.getAddresses()){

			if (street1.equals(address.getStreet())){

				street1Exists = true;

			}

			if (street3.equals(address.getStreet())){

				street3Exists = true;

			}

			if (Country.ARGENTINAARGENTINEREPUBLIC() == address.getCountry()){

				country1Exists = true;

			}

		}

		Assert.assertTrue("Street1 must be one of the streets in team2's addresses", street1Exists);

		Assert.assertTrue("Street3 must be one of the streets in team2's addressesss", street3Exists);

		Assert.assertTrue("Argentina must be one of the countries in team2's addresses", country1Exists);

		//Person

		Institution institution1 = Institution.NewInstance();

		institution1.setTitleCache("inst1", true);

		Institution institution2 = Institution.NewInstance();

		institution2.setTitleCache("inst2", true);

		TimePeriod period1 = TimePeriod.NewInstance(2002, 2004);

		TimePeriod period2 = TimePeriod.NewInstance(2004, 2006);

		person1.addInstitutionalMembership(institution1, period1, "departement1", "role1");

		person2.addInstitutionalMembership(institution2, period2, "departement2", "role2");

		IMergeStrategy personMergeStrategy = DefaultMergeStrategy.NewInstance(Person.class);

		personMergeStrategy.invoke(person1, person2);

		Assert.assertEquals("Number of institutional memberships must be 2", 2, person1.getInstitutionalMemberships().size());

		for (InstitutionalMembership institutionalMembership : person1.getInstitutionalMemberships()){

			Assert.assertSame("Person of institutional memebership must be person1", person1, institutionalMembership.getPerson());

		}

	}

}