/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvRecordBaseRedlist.java - Diff - EDIT - EDIT Project Management

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Revision f1a25720

Added by Katja Luther over 6 years ago

ID f1a25720755daa96e8838a617a660dfced7b9f31
Parent 23e50194

first implementation for change from joda time to java8 time

cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvRecordBaseRedlist.java
1	1	/**
2	2	* Copyright (C) 2009 EDIT
3		* European Distributed Institute of Taxonomy
	3	* European Distributed Institute of Taxonomy
4	4	* http://www.e-taxonomy.eu
5		*
	5	*
6	6	* The contents of this file are subject to the Mozilla Public License Version 1.1
7	7	* See LICENSE.TXT at the top of this package for the full license terms.
8	8	*/
...	...
11	11	import java.io.PrintWriter;
12	12	import java.net.URI;
13	13	import java.net.URISyntaxException;
	14	import java.time.ZonedDateTime;
	15	import java.time.temporal.Temporal;
14	16	import java.util.ArrayList;
15	17	import java.util.HashMap;
16	18	import java.util.HashSet;
...	...
20	22
21	23	import org.apache.commons.lang.StringUtils;
22	24	import org.apache.log4j.Logger;
23		import org.joda.time.DateTime;
24		import org.joda.time.Partial;
25	25
26	26	import eu.etaxonomy.cdm.common.CdmUtils;
27	27	import eu.etaxonomy.cdm.io.dwca.TermUri;
...	...
61	61	protected static final boolean IS_FIRST = false;
62	62	protected static final boolean IS_NOT_FIRST = true;
63	63	// protected static final String SEP = ",";
64
	64
65	65	protected Map<String, URI> knownFields = new HashMap<String, URI>();
66	66	protected Set<TermUri> knownTermFields = new HashSet<TermUri>();
67
	67
68	68	public abstract void write(PrintWriter writer);
69	69	protected abstract void registerKnownFields();
70
	70
71	71	protected int count;
72	72	private CsvMetaDataRecordRedlist metaDataRecord;
73	73	protected CsvTaxExportConfiguratorRedlist config;
...	...
75	75	private Integer id;
76	76	private UUID uuid;
77	77
78
	78
79	79	protected CsvRecordBaseRedlist(CsvMetaDataRecordRedlist metaDataRecord, CsvTaxExportConfiguratorRedlist config){
80	80	this.metaDataRecord = metaDataRecord;
81	81	this.count = metaDataRecord.inc();
82	82	this.config = config;
83	83	}
84
85
	84
	85
86	86	public void setId(Integer id) {
87	87	this.id = id;
88	88	}
...	...
107	107	String value = null;
108	108	print(value, writer, addSeparator, fieldKey);
109	109	}
110
	110
111	111	// protected void print(Object object, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
112	112	// print(object == null ? null : object.toString(), writer, addSeparator, fieldKey);
113	113	// }
...	...
124	124	print(agent == null ? null : getAgent(agent), writer, addSeparator, fieldKey);
125	125	}
126	126
127
	127
128	128	protected void print(Language language, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
129	129	print(language, writer, addSeparator, fieldKey.getUriString());
130	130	}
...	...
137	137	protected void print(LSID lsid, PrintWriter writer, boolean addSeparator, String fieldKey) {
138	138	print(lsid == null ? null : String.valueOf(lsid.toString()), writer, addSeparator, fieldKey);
139	139	}
140
	140
141	141	protected void print(Set<Rights> rights, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
142	142	print(rights, writer, addSeparator, fieldKey.getUriString());
143	143	}
...	...
151	151	protected void print(URI uri, PrintWriter writer, boolean addSeparator, String fieldKey) {
152	152	print(uri == null ? null : String.valueOf(uri), writer, addSeparator, fieldKey);
153	153	}
154
	154
155	155	protected void print(Point point, PrintWriter writer, boolean addSeparator, TermUri latitudeKey, TermUri longitudeKey) {
156	156	print(point, writer, addSeparator, latitudeKey.getUriString(), longitudeKey.getUriString());
157	157	}
158
	158
159	159	protected void print(Point point, PrintWriter writer, boolean addSeparator, String latitudeKey, String longitudeKey) {
160	160	if (point == null){
161	161	String toPrint = null;
...	...
170	170	}
171	171	protected void print(Boolean boolValue, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
172	172	print(boolValue, writer, addSeparator, fieldKey.getUriString());
173		}
	173	}
174	174	protected void print(Boolean boolValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
175	175	print(boolValue == null ? null : String.valueOf(boolValue), writer, addSeparator, fieldKey);
176	176	}
...	...
181	181	protected void print(Integer intValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
182	182	print(intValue == null ? null : String.valueOf(intValue), writer, addSeparator, fieldKey);
183	183	}
184
	184
185	185	protected void printId(Integer intValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
186	186	print(intValue == null ? null : String.valueOf(intValue), writer, addSeparator, fieldKey);
187	187	}
...	...
196	196	protected void print(String value, PrintWriter writer, boolean addSeparator, TermUri fieldKey, String defaultValue) {
197	197	print(value, writer, addSeparator, fieldKey.getUriString(), defaultValue);
198	198	}
199
	199
200	200	protected void print(String value, PrintWriter writer, boolean addSeparator, String fieldKey) {
201	201	print(value, writer, addSeparator, fieldKey, null);
202	202	}
203
	203
204	204	protected void print(String value, PrintWriter writer, boolean addSeparator, String fieldKey, String defaultValue) {
205	205	if (count == 1 && addSeparator == IS_NOT_FIRST){
206	206	registerFieldKey(URI.create(fieldKey), defaultValue);
...	...
210	210	if (StringUtils.isNotBlank(value)){
211	211	//Replace quotes by double quotes
212	212	value = value.replace("\"", "\"\"");
213
	213
214	214	value = value.replace(config.getLinesTerminatedBy(), "\\r");
215
	215
216	216	//replace all line brakes according to best practices: http://code.google.com/p/gbif-ecat/wiki/BestPractices
217	217	value = value.replace("\r\n", "\\r");
218	218	value = value.replace("\r", "\\r");
219	219	value = value.replace("\n", "\\r");
220
	220
221	221	strToPrint += config.getFieldsEnclosedBy() + value + config.getFieldsEnclosedBy();
222	222	}
223	223	writer.print(strToPrint);
224	224	}
225	225	}
226
	226
227	227	/**
228	228	* @param writer
229	229	* @param list
...	...
245	245	* @param list
246	246	* @param termUri
247	247	* @param writer
248		*
	248	*
249	249	* Method for concatenating strings, especially for the red list use case
250	250	*/
251	251	protected void print(ArrayList<String> list, TermUri termUri, PrintWriter writer){
...	...
266	266	print(element, writer, IS_FIRST, termUri);
267	267	writer.write(",");
268	268	logger.info(element);
269
	269
270	270	}
271	271	}
272	272	}
273	273	}
274
275
	274
	275
276	276	private void registerFieldKey(URI key, String defaultValue) {
277	277	this.metaDataRecord.addFieldEntry(key, defaultValue);
278	278	}
279	279
280
	280
281	281	protected String getRights(Rights rights) {
282	282	if (rights == null){
283	283	return "";
...	...
296	296	}
297	297	}
298	298
299		protected String getDate(DateTime date) {
	299	protected String getDate(ZonedDateTime date) {
300	300	if (date == null){
301	301	return "";
302	302	}else{
...	...
339	339	return result;
340	340	}
341	341	}
342
	342
343	343	protected String getSex(DefinedTerm sex) {
344	344	String result = CsvTaxExportTransformerRedlist.transformToGbifSex(sex);
345	345	if (result == null){
...	...
352	352	return result;
353	353	}
354	354	}
355
	355
356	356	protected String getLifeStage(DefinedTerm stage) {
357	357	String result = CsvTaxExportTransformerRedlist.transformToGbifLifeStage(stage);
358	358	if (result == null){
...	...
378	378	return result;
379	379	}
380	380	}
381
	381
382	382	protected String getEstablishmentMeans(PresenceAbsenceTerm status) {
383	383	String result = CsvTaxExportTransformerRedlist.transformToGbifEstablishmentMeans(status);
384	384	if (result == null){
...	...
392	392	}
393	393	}
394	394
395
396
	395
	396
397	397	protected String getAgent(AgentBase<?> agent) {
398	398	if (agent == null){
399	399	return "";
...	...
402	402	return agent.getTitleCache();
403	403	}
404	404	}
405
	405
406	406
407	407	protected String getFeature(Feature feature) {
408	408	if (feature == null){
...	...
413	413	}
414	414	}
415	415
416
	416
417	417	protected String getTimePeriod(TimePeriod period) {
418	418	if (period == null){
419	419	return "";
...	...
422	422	return period.toString();
423	423	}
424	424	}
425
	425
426	426	protected String getTimePeriodPart(TimePeriod period, boolean useEnd) {
427	427	if (period == null){
428	428	return "";
429	429	}else{
430		Partial date = useEnd? period.getEnd(): period.getStart();
	430	Temporal date = useEnd? period.getEnd(): period.getStart();
431	431	if (date == null){
432	432	return "";
433	433	}else{
...	...
451	451	return result;
452	452	}
453	453	}
454
	454
455	455
456	456	protected String getDesignationType(TypeDesignationStatusBase<?> status) {
457	457	if (status == null){
...	...
471	471	return result;
472	472	}
473	473	}
474
475
	474
	475
476	476	protected void addKnownField(String string, String uri) throws URISyntaxException {
477	477	this.knownFields.put(string, new URI(uri));
478	478	}
479
	479
480	480	protected void addKnownField(TermUri term) throws URISyntaxException {
481	481	this.knownTermFields.add(term);
482	482	}

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Revision f1a25720

Added by Katja Luther over 6 years ago