|
1
|
/**
|
|
2
|
* Copyright (C) 2018 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.api.service.dto;
|
|
10
|
|
|
11
|
import java.util.HashSet;
|
|
12
|
import java.util.Set;
|
|
13
|
|
|
14
|
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
|
|
15
|
import eu.etaxonomy.cdm.model.molecular.AmplificationResult;
|
|
16
|
import eu.etaxonomy.cdm.model.molecular.DnaQuality;
|
|
17
|
import eu.etaxonomy.cdm.model.molecular.DnaSample;
|
|
18
|
import eu.etaxonomy.cdm.model.molecular.Sequence;
|
|
19
|
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
|
|
20
|
|
|
21
|
/**
|
|
22
|
* @author k.luther
|
|
23
|
* @since 02.08.2018
|
|
24
|
*
|
|
25
|
*/
|
|
26
|
public class DNASampleDTO extends PreservedSpecimenDTO{
|
|
27
|
|
|
28
|
private Set<SequenceDTO> sequences = new HashSet<SequenceDTO>();
|
|
29
|
|
|
30
|
private Set<AmplificationResult> amplificationResults = new HashSet<AmplificationResult>();
|
|
31
|
|
|
32
|
private DnaQuality dnaQuality;
|
|
33
|
|
|
34
|
|
|
35
|
|
|
36
|
|
|
37
|
public DNASampleDTO(DerivedUnit derivedUnit) {
|
|
38
|
super(derivedUnit);
|
|
39
|
DnaSample dnaSample = HibernateProxyHelper.deproxy(derivedUnit, DnaSample.class);
|
|
40
|
Set<SequenceDTO> seqDtos = new HashSet<>();
|
|
41
|
for (Sequence seq: dnaSample.getSequences()){
|
|
42
|
seqDtos.add(new SequenceDTO(seq));
|
|
43
|
}
|
|
44
|
this.setSequences(seqDtos);
|
|
45
|
this.amplificationResults = dnaSample.getAmplificationResults();
|
|
46
|
this.dnaQuality = HibernateProxyHelper.deproxy(dnaSample.getDnaQuality(), DnaQuality.class);
|
|
47
|
}
|
|
48
|
|
|
49
|
|
|
50
|
public void setSequences(Set<SequenceDTO> sequences) {
|
|
51
|
this.sequences = sequences;
|
|
52
|
}
|
|
53
|
|
|
54
|
|
|
55
|
public Set<AmplificationResult> getAmplificationResults() {
|
|
56
|
return amplificationResults;
|
|
57
|
}
|
|
58
|
|
|
59
|
|
|
60
|
public void setAmplificationResults(Set<AmplificationResult> amplificationResults) {
|
|
61
|
this.amplificationResults = amplificationResults;
|
|
62
|
}
|
|
63
|
|
|
64
|
|
|
65
|
public DnaQuality getDnaQuality() {
|
|
66
|
return dnaQuality;
|
|
67
|
}
|
|
68
|
|
|
69
|
|
|
70
|
public void setDnaQuality(DnaQuality dnaQuality) {
|
|
71
|
this.dnaQuality = dnaQuality;
|
|
72
|
}
|
|
73
|
|
|
74
|
|
|
75
|
public Set<SequenceDTO> getSequences() {
|
|
76
|
return sequences;
|
|
77
|
}
|
|
78
|
|
|
79
|
|
|
80
|
}
|