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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.cdmLightWord;
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/**
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* An enumeration with each instance representing a table type in the Output Model.
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*
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* @author a.mueller
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* @date 29.06.2022
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*/
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public enum WordClassificationExportTable {
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METADATA("Metadata", metaDataColumns()),
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SCIENTIFIC_NAME("ScientificName", nameColumns()),
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NAME_RELATIONSHIP("NameRelationship",nameRelationColumns()),
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HOMOTYPIC_GROUP("HomotypicGroup", homotypicGroupColumns()),
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NOMENCLATURAL_AUTHOR("PersonOrTeam", nomenclaturalAuthorColumns()),
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NOMENCLATURAL_AUTHOR_TEAM_RELATION("PersonTeamRelation", nomenclaturalAuthorTeamRelColumns()),
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TYPE_DESIGNATION("SpecimenTypeDesignation", typeDesignationColumns()),
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SPECIMEN("Specimen", specimenColumns()),
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TAXON("Taxon", taxonColumns()),
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SYNONYM("Synonym", synonymColumns()),
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REFERENCE("Reference", referenceColumns()),
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SIMPLE_FACT("SimpleFact", simpleFactsColumns()),
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TAXON_INTERACTION_FACT("TaxonInteractionFact", taxonInteractionFactsColumns()),
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SPECIMEN_FACT("SpecimenFact", specimenFactsColumns()),
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GEOGRAPHIC_AREA_FACT("GeographicAreaFact", geographicAreaFactsColumns()),
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COMMON_NAME_FACT("CommonNameFact", commonNameFactsColumns()),
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FACT_SOURCES("FactSources", factSourcesColumns()),
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IDENTIFIER("Identifier", identifierColumns()),
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MEDIA("MediaFact", mediaColumns()),
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// CONDENSED_DISTRIBUTION_FACT("CondensedDistributionFact", compressedDistributionFactColumns()),
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NAME_FACT("NameFact", nameFactColumns()),
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TYPE_SPECIMEN_NAME("NameSpecimenTypeRelation", typeDesignationNameColumns())
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;
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//Taxon/Synonym
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protected static final String NAME_FK = "Name_Fk";
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protected static final String TAXON_ID = "Taxon_ID";
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protected static final String TAXON_FK = "Taxon_Fk";
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protected static final String CLASSIFICATION_ID = "Classification_ID";
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protected static final String CLASSIFICATION_TITLE = "ClassificationName";
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protected static final String SYNONYM_ID = "Synonym_ID";
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protected static final String PARENT_FK = "Parent_Fk";
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protected static final String SEC_REFERENCE_FK = "SecReference_Fk";
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protected static final String SEC_REFERENCE = "SecReference";
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protected static final String SORT_INDEX = "SortIndex";
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protected static final String UNPLACED = "Unplaced";
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protected static final String EXCLUDED = "Excluded";
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protected static final String DOUBTFUL = "PlacementDoubtful";
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protected static final String PUBLISHED = "Published";
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protected static final String STATUS_NOTES = "StatusNotes";
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//pro parte / misapplied
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protected static final String SYN_SEC_REFERENCE_FK = "SynSecReference_Fk";
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protected static final String SYN_SEC_REFERENCE = "SynSecReference";
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protected static final String IS_PRO_PARTE = "IsProParteSynonym";
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protected static final String IS_PARTIAL = "IsPartial";
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protected static final String IS_MISAPPLIED = "IsMisapplied";
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//Reference
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protected static final String REFERENCE_ID = "Reference_ID";
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protected static final String BIBLIO_SHORT_CITATION = "BibliographicShortCitation";
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protected static final String REF_TITLE = "Title";
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protected static final String ABBREV_REF_TITLE = "AbbrevTitle";
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protected static final String DATE_PUBLISHED = "DatePublished";
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protected static final String EDITION = "Edition";
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protected static final String EDITOR= "Editor";
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protected static final String ISBN = "ISBN";
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protected static final String ISSN = "ISSN";
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protected static final String ORGANISATION = "Organisation";
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protected static final String PAGES = "Pages";
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protected static final String PLACE_PUBLISHED = "PlacePublished";
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protected static final String PUBLISHER = "Publisher";
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protected static final String REF_ABSTRACT = "ReferenceAbstract";
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protected static final String SERIES_PART = "SeriesPart";
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protected static final String VOLUME = "Volume";
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protected static final String YEAR = "Year";
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protected static final String AUTHORSHIP_TITLE = "FullAuthor";
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protected static final String IN_REFERENCE = "InReference";
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protected static final String INSTITUTION = "Institution";
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// protected static final String LSID = "LSID";
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protected static final String SCHOOL = "School";
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protected static final String REF_TYPE = "ReferenceType";
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protected static final String URI = "URI";
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//Name
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protected static final String NAME_ID = "Name_ID";
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// protected static final String TROPICOS_ID = "Tropicos_ID";
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// protected static final String IPNI_ID = "IPNI_ID";
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// protected static final String WFO_ID = "WorldFloraOnline_ID";
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protected static final String LSID = "LSID";
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protected static final String RANK = "Rank";
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protected static final String RANK_SEQUENCE = "RankSequence";
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protected static final String FULL_NAME_WITH_AUTHORS = "FullNameWithAuthors";
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protected static final String FULL_NAME_WITH_REF = "FullNameWithRef";
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protected static final String FULL_NAME_NO_AUTHORS = "FullNameNoAuthors";
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protected static final String GENUS_UNINOMIAL = "GenusOrUninomial";
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protected static final String INFRAGENERIC_RANK = "InfragenericRank";
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protected static final String INFRAGENERIC_EPITHET = "InfraGenericEpithet";
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protected static final String SPECIFIC_EPITHET = "SpecificEpithet";
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protected static final String INFRASPECIFIC_RANK = "InfraspecificRank";
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protected static final String INFRASPECIFIC_EPITHET = "InfraSpecificEpithet ";
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protected static final String APPENDED_PHRASE = "AppendedPhrase";
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protected static final String BAS_EX_AUTHORTEAM_FK = "BasionymExAuthorTeam_Fk";
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protected static final String BAS_AUTHORTEAM_FK = "BasionymAuthorTeam_Fk";
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protected static final String COMB_EX_AUTHORTEAM_FK = "PublishingExAuthorTeam_Fk";
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protected static final String COMB_AUTHORTEAM_FK = "PublishingAuthorTeam_Fk";
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protected static final String AUTHOR_TEAM_STRING = "AuthorTeamString";
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protected static final String NAME_USED_IN_SOURCE = "NameUsedInSource_Fk";
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// protected static final String REFERENCE_FK = "Reference_Fk"
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protected static final String PUBLICATION_TYPE = "PublicationType";
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protected static final String ABBREV_TITLE = "AbbreviatedTitle";
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protected static final String FULL_TITLE = "FullTitle";
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protected static final String ABBREV_REF_AUTHOR = "AbbreviatedInRefAuthor";
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protected static final String FULL_REF_AUTHOR = "FullInRefAuthor";
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protected static final String COLLATION = "Collation";
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protected static final String VOLUME_ISSUE = "VolumeIssue";
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protected static final String DETAIL = "Detail";
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protected static final String YEAR_PUBLISHED = "YearPublished";
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protected static final String VERBATIM_DATE = "VerbatimDate";
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protected static final String PROTOLOGUE_URI = "ProtologueURI";
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protected static final String NOM_STATUS = "NomenclaturalStatus";
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protected static final String NOM_STATUS_ABBREV = "NomenclaturalStatusAbbreviation";
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protected static final String HOMOTYPIC_GROUP_FK = "HomotypicGroup_Fk";
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protected static final String HOMOTYPIC_GROUP_SEQ = "HomotypicGroupSequenceNumber";
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protected static final String PROTOLOGUE_TYPE_STATEMENT = "ProtologueTypeStatement";
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protected static final String TYPE_SPECIMEN = "TypeSpecimens";
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protected static final String TYPE_STATEMENT = "TypeStatements";
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//Name Relationship
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protected static final String NAME1_FK = "Name1_Fk";
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protected static final String NAME2_FK = "Name2_Fk";
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protected static final String NAME_REL_TYPE = "NameRelationshipType";
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//CDM MetaData
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protected static final String INSTANCE_ID = "EditInstance_ID";
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protected static final String INSTANCE_NAME = "EditInstanceName";
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protected static final String DATASET_DESCRIPTION = "DatasetDescription";
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protected static final String DATASET_CREATOR = "DatasetCreator";
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protected static final String DATASET_CONTRIBUTOR = "DatasetContributor";
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protected static final String DATASET_TITLE = "DatasetTitle";
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protected static final String DATASET_LANGUAGE = "Language";
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protected static final String DATASET_LANDINGPAGE = "DataSetLandingPage";
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protected static final String DATASET_DOWNLOAD_LINK = "DatasetDownloadLink";
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protected static final String DATASET_BASE_URL = "DatasetBaseUrl";
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protected static final String DATASET_RECOMMENDED_CITATTION = "RecommendedCitation";
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protected static final String DATASET_LOCATION = "DatasetLocation";
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protected static final String DATASET_KEYWORDS = "DatasetKeywords";
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protected static final String DATASET_LICENCE = "Licence";
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//Homotypic Group
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protected static final String HOMOTYPIC_GROUP_ID = "HomotypicGroup_ID";
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protected static final String HOMOTYPIC_GROUP_STRING = "HomotypicGroupString";
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protected static final String HOMOTYPIC_GROUP_WITH_SEC_STRING = "HomotypicGroupStringWithSec";
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protected static final String HOMOTYPIC_GROUP_WITHOUT_ACCEPTED = "HomotypicGroupStringWithoutAccepted";
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protected static final String HOMOTYPIC_GROUP_WITHOUT_ACCEPTEDWITHSEC = "HomotypicGroupStringWithoutAcceptedWithSec";
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protected static final String HOMOTYPIC_GROUP_TYPE_STATEMENT_REFERENCE = "HomotypicGroupTypeStatementReference";
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protected static final String TYPE_STRING = "TypeSpecimenString";
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protected static final String TYPE_CACHE = "TypeStatementsString";
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protected static final String TYPE_STRING_WITH_REF = "TypeSpecimenStringWithRef";
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protected static final String TYPE_CACHE_WITH_REF = "TypeStatementsStringWithRef";
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//NomenclaturalAuthor
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protected static final String AUTHOR_ID = "PersonOrTeam_ID";
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protected static final String ABBREV_AUTHOR = "AbbrevNames";
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protected static final String AUTHOR_TITLE = "FullNames";
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protected static final String AUTHOR_GIVEN_NAME = "PersonOtherNames";
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protected static final String AUTHOR_FAMILY_NAME = "PersonFamiliyNames";
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protected static final String AUTHOR_PREFIX = "PersonPrefix";
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protected static final String AUTHOR_SUFFIX = "PersonSuffix";
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//Nomenclatural Author AuthorTeam Relations
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protected static final String AUTHOR_FK = "Author_Fk";
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protected static final String AUTHOR_TEAM_FK = "AuthorTeam_Fk";
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protected static final String AUTHOR_TEAM_SEQ_NUMBER = "SequenceNumber";
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//TypeDesignations
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protected static final String TYPE_ID="Type_ID";
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protected static final String SPECIMEN_FK = "Specimen_Fk";
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protected static final String TYPIFIED_NAME_FK = "TypifiedName_Fk";
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protected static final String TYPE_VERBATIM_CITATION = "TypeVerbatimCitation";
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protected static final String TYPE_STATUS = "TypeStatus";
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protected static final String TYPE_INFORMATION_REF_STRING = "TypeInformationSource";
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protected static final String TYPE_INFORMATION_REF_FK = "TypeInfoSourcePreferred_Fk";
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protected static final String TYPE_DESIGNATED_BY_REF_FK = "TypeDesignatedBy_Fk";
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//Type_Name_Rel
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protected static final String TYPE_FK="Type_Fk";
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//Specimen
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protected static final String SPECIMEN_ID = "Specimen_ID";
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protected static final String SPECIMEN_CITATION = "SpecimenCitation";
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protected static final String FIELDUNIT_CITATION = "FieldUnitCitation";
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protected static final String LOCALITY= "Locality";
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protected static final String COUNTRY = "Country";
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protected static final String AREA_CATEGORY1 = "AreaCategory1";
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protected static final String AREA_NAME1 = "AreaName1";
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protected static final String AREA_CATEGORY2 = "AreaCategory2";
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protected static final String AREA_NAME2 = "AreaName2";
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protected static final String AREA_CATEGORY3 = "AreaCategory3";
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protected static final String AREA_NAME3 = "AreaName3";
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protected static final String FURTHER_AREAS = "FurtherAreas";
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protected static final String COLLECTOR_STRING = "CollectorString";
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protected static final String COLLECTOR_NUMBER = "CollectorNumber";
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protected static final String COLLECTION_DATE = "CollectionDate";
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protected static final String SPECIMEN_IMAGE_URIS = "SpecimenImageURIs";
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protected static final String HERBARIUM_ABBREV = "HerbariumAbbrev";
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protected static final String MEDIA_SPECIMEN_URL = "MediaSpecimenURI";
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protected static final String PREFERREDSTABLE_ID = "PreferredStableId";
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protected static final String BARCODE = "Barcode";
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protected static final String ACCESSION_NUMBER = "AccessionNumber";
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protected static final String CATALOGUE_NUMBER = "CatalogueNumber ";
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//other specimen attributes
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//SimpleFacts
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protected static final String FACT_ID = "Fact_ID";
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protected static final String FACT_TEXT = "FactText";
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protected static final String LANGUAGE = "Language";
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protected static final String MEDIA_URI = "MediaURI";
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protected static final String FACT_CATEGORY = "FactCategory";
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// Specimen Facts
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protected static final String SPECIMEN_NOTES = "SpecimenNotes";
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protected static final String SPECIMEN_DESCRIPTION = "SpecimenDescription";
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// TaxonInteraction Facts
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protected static final String TAXON2_FK = "Taxon2_FK";
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protected static final String DESCRIPTION = "Description";
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//Geographic Area Facts
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protected static final String AREA_LABEL = "AreaLabel";
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protected static final String STATUS_LABEL = "StatusLabel";
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//FactSources
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protected static final String FACT_FK = "Fact_Fk";
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protected static final String REFERENCE_FK = "Reference_Fk";
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protected static final String NAME_IN_SOURCE_FK = "NameInSource_Fk";
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protected static final String FACT_TYPE = "FactType";
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//Annotations
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//Identifiers
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protected static final String EXTERNAL_NAME_IDENTIFIER = "ExternalIdentifier";
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protected static final String IDENTIFIER_TYPE = "IdentifierType";
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protected static final String FK = "ForeignKey";
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protected static final String REF_TABLE = "ReferencedTable";
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final static String[] homotypicGroupColumns(){
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return new String[]{HOMOTYPIC_GROUP_ID, HOMOTYPIC_GROUP_STRING, TYPE_STRING, TYPE_CACHE, HOMOTYPIC_GROUP_WITH_SEC_STRING, HOMOTYPIC_GROUP_WITHOUT_ACCEPTED, HOMOTYPIC_GROUP_WITHOUT_ACCEPTEDWITHSEC, SORT_INDEX, HOMOTYPIC_GROUP_TYPE_STATEMENT_REFERENCE};
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}
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// private static String[] compressedDistributionFactColumns() {
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// return new String[]{FACT_ID, TAXON_FK, FACT_TEXT};
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// }
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private Object usageFactColumns() {
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return new String[]{FACT_ID, TAXON_FK, FACT_TEXT, LANGUAGE, MEDIA_URI, FACT_CATEGORY};
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}
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final static String[] nameFactColumns() {
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return new String[]{FACT_ID, NAME_FK, FACT_TEXT, LANGUAGE, MEDIA_URI, FACT_CATEGORY};
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}
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final static String[] taxonInteractionFactsColumns(){
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return new String[]{FACT_ID, TAXON_FK, TAXON2_FK, DESCRIPTION};
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}
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final static String[] identifierColumns() {
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return new String[]{ FK, REF_TABLE, EXTERNAL_NAME_IDENTIFIER, IDENTIFIER_TYPE};
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}
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final static String[] mediaColumns() {
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return new String[]{ FACT_ID, TAXON_FK, NAME_FK, MEDIA_URI};
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}
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final static String[] factSourcesColumns() {
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return new String[]{FACT_FK, REFERENCE_FK, NAME_IN_SOURCE_FK, FACT_TYPE};
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}
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final static String[] specimenFactsColumns() {
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return new String[]{FACT_ID, TAXON_FK, SPECIMEN_FK, SPECIMEN_DESCRIPTION, SPECIMEN_NOTES};
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}
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final static String[] commonNameFactsColumns() {
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return new String[]{FACT_ID, TAXON_FK, FACT_TEXT, LANGUAGE, AREA_LABEL};
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}
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final static String[] geographicAreaFactsColumns() {
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return new String[]{FACT_ID, TAXON_FK, AREA_LABEL, STATUS_LABEL};
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}
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final static String[] simpleFactsColumns() {
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309
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return new String[]{FACT_ID, TAXON_FK, FACT_TEXT, LANGUAGE, MEDIA_URI, FACT_CATEGORY};
|
|
310
|
}
|
|
311
|
|
|
312
|
final static String[] nomenclaturalAuthorColumns() {
|
|
313
|
return new String[]{AUTHOR_ID, ABBREV_AUTHOR, AUTHOR_TITLE, AUTHOR_GIVEN_NAME, AUTHOR_FAMILY_NAME, AUTHOR_PREFIX, AUTHOR_SUFFIX};
|
|
314
|
}
|
|
315
|
|
|
316
|
final static String[] nomenclaturalAuthorTeamRelColumns() {
|
|
317
|
return new String[]{AUTHOR_TEAM_FK, AUTHOR_FK, AUTHOR_TEAM_SEQ_NUMBER};
|
|
318
|
}
|
|
319
|
|
|
320
|
final static String[] metaDataColumns(){
|
|
321
|
return new String[]{INSTANCE_ID, INSTANCE_NAME, DATASET_TITLE, DATASET_CONTRIBUTOR, DATASET_CREATOR, DATASET_DESCRIPTION,
|
|
322
|
DATASET_DOWNLOAD_LINK, DATASET_BASE_URL, DATASET_KEYWORDS, DATASET_LANDINGPAGE, DATASET_LANGUAGE, DATASET_LICENCE,
|
|
323
|
DATASET_LOCATION, DATASET_RECOMMENDED_CITATTION};
|
|
324
|
}
|
|
325
|
|
|
326
|
final static String[] nameRelationColumns(){
|
|
327
|
return new String[]{NAME1_FK, NAME2_FK, NAME_REL_TYPE};
|
|
328
|
}
|
|
329
|
|
|
330
|
final static String[] nameColumns(){
|
|
331
|
return new String[]{NAME_ID, LSID, RANK, RANK_SEQUENCE,
|
|
332
|
FULL_NAME_WITH_AUTHORS, FULL_NAME_NO_AUTHORS, GENUS_UNINOMIAL,
|
|
333
|
INFRAGENERIC_RANK, INFRAGENERIC_EPITHET, SPECIFIC_EPITHET,
|
|
334
|
INFRASPECIFIC_RANK, INFRASPECIFIC_EPITHET,
|
|
335
|
BAS_EX_AUTHORTEAM_FK, BAS_AUTHORTEAM_FK, COMB_EX_AUTHORTEAM_FK, COMB_AUTHORTEAM_FK,
|
|
336
|
AUTHOR_TEAM_STRING, REFERENCE_FK, PUBLICATION_TYPE, ABBREV_TITLE, FULL_TITLE,
|
|
337
|
ABBREV_REF_AUTHOR, FULL_REF_AUTHOR, COLLATION, VOLUME_ISSUE,
|
|
338
|
DETAIL, DATE_PUBLISHED, YEAR_PUBLISHED, VERBATIM_DATE, PROTOLOGUE_URI,
|
|
339
|
NOM_STATUS, NOM_STATUS_ABBREV, HOMOTYPIC_GROUP_FK,
|
|
340
|
HOMOTYPIC_GROUP_SEQ, PROTOLOGUE_TYPE_STATEMENT, TYPE_SPECIMEN, TYPE_STATEMENT, FULL_NAME_WITH_REF, NAME_USED_IN_SOURCE, APPENDED_PHRASE
|
|
341
|
};
|
|
342
|
}
|
|
343
|
|
|
344
|
final static String[] taxonColumns(){
|
|
345
|
return new String[]{TAXON_ID, CLASSIFICATION_ID, CLASSIFICATION_TITLE, NAME_FK, PARENT_FK, SEC_REFERENCE_FK, SEC_REFERENCE, SORT_INDEX, EXCLUDED, STATUS_NOTES, PUBLISHED, UNPLACED, DOUBTFUL, APPENDED_PHRASE};
|
|
346
|
}
|
|
347
|
|
|
348
|
final static String[] synonymColumns(){
|
|
349
|
return new String[]{SYNONYM_ID, TAXON_FK, NAME_FK, SYN_SEC_REFERENCE_FK, SYN_SEC_REFERENCE, SEC_REFERENCE_FK, SEC_REFERENCE,
|
|
350
|
IS_PRO_PARTE, IS_PARTIAL, IS_MISAPPLIED, PUBLISHED, SORT_INDEX, APPENDED_PHRASE};
|
|
351
|
}
|
|
352
|
|
|
353
|
final static String[] referenceColumns(){
|
|
354
|
return new String[]{REFERENCE_ID, BIBLIO_SHORT_CITATION, REF_TITLE,ABBREV_REF_TITLE, DATE_PUBLISHED, EDITION, EDITOR, ISBN,ISSN, ORGANISATION, PAGES, PLACE_PUBLISHED, PUBLISHER,
|
|
355
|
REF_ABSTRACT, SERIES_PART, VOLUME, YEAR, AUTHORSHIP_TITLE, AUTHOR_FK, IN_REFERENCE, INSTITUTION, LSID, SCHOOL, REF_TYPE, URI};
|
|
356
|
}
|
|
357
|
|
|
358
|
final static String[] typeDesignationColumns(){
|
|
359
|
return new String[]{TYPE_ID, TYPIFIED_NAME_FK, SPECIMEN_FK, //TYPE_VERBATIM_CITATION,
|
|
360
|
TYPE_STATUS, TYPE_DESIGNATED_BY_REF_FK, TYPE_INFORMATION_REF_STRING, TYPE_INFORMATION_REF_FK};
|
|
361
|
|
|
362
|
}
|
|
363
|
|
|
364
|
final static String[] typeDesignationNameColumns(){
|
|
365
|
return new String[]{TYPE_FK, NAME_FK};
|
|
366
|
}
|
|
367
|
|
|
368
|
|
|
369
|
final static String[] specimenColumns() {
|
|
370
|
return new String[]{SPECIMEN_ID, SPECIMEN_CITATION, FIELDUNIT_CITATION, LOCALITY, COUNTRY, AREA_CATEGORY1, AREA_NAME1, AREA_CATEGORY2, AREA_NAME2, AREA_CATEGORY3, AREA_NAME3,
|
|
371
|
FURTHER_AREAS, COLLECTOR_STRING, COLLECTOR_NUMBER, COLLECTION_DATE, SPECIMEN_IMAGE_URIS, HERBARIUM_ABBREV, MEDIA_SPECIMEN_URL, PREFERREDSTABLE_ID, BARCODE, CATALOGUE_NUMBER, ACCESSION_NUMBER};
|
|
372
|
}
|
|
373
|
|
|
374
|
private String tableName;
|
|
375
|
private String[] columnNames;
|
|
376
|
|
|
377
|
// ************** CONSTRUCTOR *******************/
|
|
378
|
|
|
379
|
private WordClassificationExportTable(String tableName, String[] columnNames){
|
|
380
|
this.tableName = tableName;
|
|
381
|
this.columnNames = columnNames;
|
|
382
|
}
|
|
383
|
|
|
384
|
// ****************** GETTER / SETTER *************/
|
|
385
|
|
|
386
|
public String getTableName() {return tableName;}
|
|
387
|
|
|
388
|
public int getSize(){ return columnNames.length;}
|
|
389
|
|
|
390
|
public String[] getColumnNames(){return columnNames;}
|
|
391
|
|
|
392
|
public int getIndex(String columnName) {
|
|
393
|
int index= 0;
|
|
394
|
for(String column : getColumnNames()){
|
|
395
|
if (column.equals(columnName)){
|
|
396
|
return index;
|
|
397
|
}
|
|
398
|
index++;
|
|
399
|
}
|
|
400
|
return -1;
|
|
401
|
}
|
|
402
|
}
|