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/**
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* Copyright (C) 2011 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.taxon;
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import java.util.ArrayList;
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import java.util.Collections;
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import org.apache.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Ignore;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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* @author a.kohlbecker
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* @date 18.07.2011
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*
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*/
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public class TaxonNodeByNameComparatorTest {
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private static final Logger logger = Logger.getLogger(TaxonNodeByNameComparatorTest.class);
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/**
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* test method for {@link TaxonNodeByNameComparator#compare(eu.etaxonomy.cdm.model.taxon.TaxonNode
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* , eu.etaxonomy.cdm.model.taxon.TaxonNode) }
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*/
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@Test
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@Ignore
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public void testCompare() {
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Classification classification = Classification.NewInstance("Greuther, 1993");
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Reference sec = ReferenceFactory.newBook();
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IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
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botname_1.setNameCache(nameCache_1, true);
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Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
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IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
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botname_2.setNameCache(nameCache_2, true);
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Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
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IBotanicalName botname_3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_3 = "Epilobium lamyi";
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botname_3.setNameCache(nameCache_3, true);
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Taxon taxon_3 = Taxon.NewInstance(botname_3, sec);
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IBotanicalName botname_4 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_4 = "Epilobium tournefortii";
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botname_4.setNameCache(nameCache_4, true);
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Taxon taxon_4 = Taxon.NewInstance(botname_4, sec);
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classification.addChildTaxon(taxon_1, sec, null);
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classification.addChildTaxon(taxon_2, sec, null);
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classification.addChildTaxon(taxon_3, sec, null);
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classification.addChildTaxon(taxon_4, sec, null);
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classification.getChildNodes();
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ArrayList<TaxonNode> taxonNodes = new ArrayList<TaxonNode>();
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taxonNodes.addAll(classification.getChildNodes());
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// order using default settings
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TaxonNodeByNameComparator taxonNodeByNameComparator = new TaxonNodeByNameComparator();
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// Collections.sort(taxonNodes, taxonNodeByNameComparator);
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int i = 0;
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logger.debug("order using default settings");
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_2, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_1, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_3, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_4, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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// order without ignoring hybrid signs
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taxonNodeByNameComparator.setIgnoreHybridSign(false);
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Collections.sort(taxonNodes, taxonNodeByNameComparator);
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i = 0;
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logger.debug("order without ignoring hybrid signs");
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_3, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_4, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_1, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_2, taxonNodes.get(i++).getTaxon().getName().getNameCache());
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}
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@Test
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public void testNullSave() {
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Classification classification = Classification.NewInstance("Greuther, 1993");
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Reference sec = ReferenceFactory.newBook();
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IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
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botname_1.setNameCache(nameCache_1, true);
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Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
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IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
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botname_2.setNameCache(nameCache_2, true);
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Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
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TaxonNode node1 = classification.addChildTaxon(taxon_1, sec, null);
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TaxonNode node2 = classification.addChildTaxon(taxon_2, sec, null);
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TaxonNodeByNameComparator taxonNodeByNameComparator = new TaxonNodeByNameComparator();
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Assert.assertEquals(0, taxonNodeByNameComparator.compare(null, null));
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Assert.assertEquals(-1, taxonNodeByNameComparator.compare(node1, null));
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Assert.assertEquals(1, taxonNodeByNameComparator.compare(null, node1));
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node2.getTaxon().setName(null);
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Assert.assertTrue(taxonNodeByNameComparator.compare(node1, node2) > 0);
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node2.setTaxon(null);
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Assert.assertTrue(taxonNodeByNameComparator.compare(node1, node2) > 0);
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}
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/**
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* test method for {@link TaxonNodeByNameComparator#compare(eu.etaxonomy.cdm.model.taxon.TaxonNode
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* , eu.etaxonomy.cdm.model.taxon.TaxonNode) }
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*/
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@Test
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@Ignore
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public void testCompareNaturalOrder() {
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Classification classification = Classification.NewInstance("Greuther, 1993");
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Reference sec = ReferenceFactory.newBook();
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IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
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botname_1.setNameCache(nameCache_1, true);
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Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
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IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
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botname_2.setNameCache(nameCache_2, true);
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Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
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IBotanicalName botname_3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_3 = "Epilobium lamyi";
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botname_3.setNameCache(nameCache_3, true);
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Taxon taxon_3 = Taxon.NewInstance(botname_3, sec);
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IBotanicalName botname_4 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_4 = "Epilobium tournefortii";
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botname_4.setNameCache(nameCache_4, true);
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Taxon taxon_4 = Taxon.NewInstance(botname_4, sec);
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IBotanicalName botname_5 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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String nameCache_5= "Epilobium hirsutum L.";
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botname_5.setNameCache(nameCache_5, true);
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Taxon taxon_5 = Taxon.NewInstance(botname_5, sec);
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TaxonNode node1 = classification.addChildTaxon(taxon_1, sec, null);
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node1.addChildTaxon(taxon_2, sec, null);
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TaxonNode node2 = classification.addChildTaxon(taxon_3, sec, null);
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node2.addChildTaxon(taxon_4, sec, null);
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classification.getChildNodes();
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ArrayList<TaxonNode> taxonNodes = new ArrayList<TaxonNode>();
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taxonNodes.addAll(classification.getChildNodes());
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// order using default settings
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TaxonNaturalComparator taxonNodeComparator = new TaxonNaturalComparator();
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// Collections.sort(taxonNodes, taxonNodeComparator);
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int i = 0;
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logger.debug("order using default settings");
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logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_1, taxonNodes.get(i).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_2, taxonNodes.get(i).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_3, taxonNodes.get(i).getTaxon().getName().getNameCache());
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logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_4, taxonNodes.get(i).getTaxon().getName().getNameCache());
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TaxonNode result = classification.addChildTaxon(taxon_5, 2, null, null);
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Assert.assertTrue(result.getSortIndex() == 2);
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i = 0;
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logger.debug(classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_1, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
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logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_2, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
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logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_5, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
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logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
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Assert.assertEquals(nameCache_3, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
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}
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}
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