Revision e6d7b501
Added by Andreas Müller almost 7 years ago
| cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java | ||
|---|---|---|
| 49 | 49 |
import eu.etaxonomy.cdm.model.description.IndividualsAssociation; |
| 50 | 50 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
| 51 | 51 |
import eu.etaxonomy.cdm.model.description.TextData; |
| 52 |
import eu.etaxonomy.cdm.model.name.BotanicalName; |
|
| 53 | 52 |
import eu.etaxonomy.cdm.model.name.HomotypicalGroup; |
| 53 |
import eu.etaxonomy.cdm.model.name.IBotanicalName; |
|
| 54 | 54 |
import eu.etaxonomy.cdm.model.name.INonViralName; |
| 55 | 55 |
import eu.etaxonomy.cdm.model.name.NameRelationship; |
| 56 | 56 |
import eu.etaxonomy.cdm.model.name.NameRelationshipType; |
| ... | ... | |
| 1198 | 1198 |
descrUUID = descr.getUuid(); |
| 1199 | 1199 |
descrElementUUID = descr.getElements().iterator().next().getUuid(); |
| 1200 | 1200 |
} |
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BotanicalName taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
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|
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IBotanicalName taxonName = nameService.find(SPECIES1_NAME_UUID);
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assertNotNull(taxonName); |
| 1203 | 1203 |
|
| 1204 | 1204 |
TaxonDeletionConfigurator config = new TaxonDeletionConfigurator(); |
| ... | ... | |
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} |
| 1215 | 1215 |
commitAndStartNewTransaction(null); |
| 1216 | 1216 |
|
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taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
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| 1217 |
taxonName = nameService.find(SPECIES1_NAME_UUID); |
|
| 1218 | 1218 |
Taxon taxon = (Taxon)service.find(SPECIES1_UUID); |
| 1219 | 1219 |
|
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//descriptionService.find(descrUUID); |
| ... | ... | |
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Taxon speciesTaxon2 = (Taxon)service.find(SPECIES2_UUID); |
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speciesTaxon.addTaxonRelation(speciesTaxon2, TaxonRelationshipType.MISAPPLIED_NAME_FOR(), null, null); |
| 1307 | 1307 |
|
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BotanicalName taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
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|
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IBotanicalName taxonName = nameService.find(SPECIES1_NAME_UUID);
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|
| 1309 | 1309 |
assertNotNull(taxonName); |
| 1310 | 1310 |
|
| 1311 | 1311 |
TaxonDeletionConfigurator config = new TaxonDeletionConfigurator(); |
| ... | ... | |
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} |
| 1322 | 1322 |
commitAndStartNewTransaction(null); |
| 1323 | 1323 |
|
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taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
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taxonName = nameService.find(SPECIES1_NAME_UUID); |
|
| 1325 | 1325 |
Taxon taxon = (Taxon)service.find(SPECIES1_UUID); |
| 1326 | 1326 |
|
| 1327 | 1327 |
|
| ... | ... | |
| 1405 | 1405 |
|
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Taxon speciesTaxon = (Taxon)service.find(SPECIES1_UUID); |
| 1407 | 1407 |
|
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BotanicalName taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
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|
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IBotanicalName taxonName = nameService.find(SPECIES1_NAME_UUID);
|
|
| 1409 | 1409 |
assertNotNull(taxonName); |
| 1410 |
BotanicalName fromName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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TaxonNameBase fromName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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|
| 1411 | 1411 |
taxonName.addRelationshipFromName(fromName, NameRelationshipType.VALIDATED_BY_NAME(), null); |
| 1412 | 1412 |
|
| 1413 | 1413 |
TaxonDeletionConfigurator config = new TaxonDeletionConfigurator(); |
| ... | ... | |
| 1418 | 1418 |
} |
| 1419 | 1419 |
commitAndStartNewTransaction(null); |
| 1420 | 1420 |
|
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taxonName = (BotanicalName) nameService.find(SPECIES1_NAME_UUID);
|
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taxonName = nameService.find(SPECIES1_NAME_UUID); |
|
| 1422 | 1422 |
Taxon taxon = (Taxon)service.find(SPECIES1_UUID); |
| 1423 | 1423 |
//because of the namerelationship the name cannot be deleted |
| 1424 | 1424 |
assertNotNull(taxonName); |
| ... | ... | |
| 1707 | 1707 |
Taxon tax = (Taxon)service.find(uuid); |
| 1708 | 1708 |
assertNotNull(tax); |
| 1709 | 1709 |
tax = (Taxon)service.find(misappliedNameUUID); |
| 1710 |
BotanicalName name = (BotanicalName) nameService.find(misNameUUID);
|
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IBotanicalName name = nameService.find(misNameUUID);
|
|
| 1711 | 1711 |
|
| 1712 | 1712 |
assertNull(tax); |
| 1713 | 1713 |
assertNull(name); |
| ... | ... | |
| 1916 | 1916 |
citationRef.setTitleCache("Sp. lunarum", true);
|
| 1917 | 1917 |
|
| 1918 | 1918 |
//genus taxon with Name, combinationAuthor, |
| 1919 |
BotanicalName botName = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()); |
|
| 1919 |
IBotanicalName botName = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
|
|
| 1920 | 1920 |
botName.setTitleCache("Hieracium L.", true);
|
| 1921 | 1921 |
botName.setGenusOrUninomial("Hieracium");
|
| 1922 | 1922 |
botName.setCombinationAuthorship(Person.NewInstance()); |
| ... | ... | |
| 1926 | 1926 |
genusTaxon.setUuid(GENUS_UUID); |
| 1927 | 1927 |
service.save(genusTaxon); |
| 1928 | 1928 |
//a name that is the basionym of genusTaxon's name |
| 1929 |
BotanicalName basionym = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
|
|
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TaxonNameBase basionym = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
|
|
| 1930 | 1930 |
basionym.setTitleCache("Hieracilla DC.", true);
|
| 1931 | 1931 |
basionym.setGenusOrUninomial("Hieracilla");
|
| 1932 | 1932 |
basionym.setCombinationAuthorship(deCandolle); |
| ... | ... | |
| 1934 | 1934 |
botName.addBasionym(basionym, null, null,"216"); |
| 1935 | 1935 |
nameService.saveOrUpdate(basionym); |
| 1936 | 1936 |
//species taxon that is the child of genus taxon |
| 1937 |
BotanicalName botSpecies = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 1937 |
IBotanicalName botSpecies = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
| 1938 | 1938 |
botSpecies.setTitleCache("Hieracium asturianum Pau", true);
|
| 1939 | 1939 |
botSpecies.setGenusOrUninomial("Hieracium");
|
| 1940 | 1940 |
botSpecies.setSpecificEpithet("asturianum");
|
| ... | ... | |
| 1952 | 1952 |
// childTaxon.setTaxonomicParent(genusTaxon, citationRef, "456"); |
| 1953 | 1953 |
classificationService.save(classification); |
| 1954 | 1954 |
//homotypic synonym of childTaxon1 |
| 1955 |
BotanicalName botSpecies4= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 1955 |
IBotanicalName botSpecies4= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
| 1956 | 1956 |
botSpecies4.setTitleCache("Hieracium gueri DC.", true);
|
| 1957 | 1957 |
botSpecies4.setGenusOrUninomial("Hieracium");
|
| 1958 | 1958 |
botSpecies4.setSpecificEpithet("gueri");
|
| ... | ... | |
| 1963 | 1963 |
service.saveOrUpdate(childTaxon); |
| 1964 | 1964 |
|
| 1965 | 1965 |
//2nd child species taxon that is the child of genus taxon |
| 1966 |
BotanicalName botSpecies2= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 1966 |
IBotanicalName botSpecies2= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
| 1967 | 1967 |
botSpecies2.setTitleCache("Hieracium wolffii Zahn", true);
|
| 1968 | 1968 |
botSpecies2.setGenusOrUninomial("Hieracium");
|
| 1969 | 1969 |
botSpecies2.setSpecificEpithet("wolffii");
|
| ... | ... | |
| 1976 | 1976 |
//childTaxon2.setTaxonomicParent(genusTaxon, citationRef, "499"); |
| 1977 | 1977 |
service.saveOrUpdate(childTaxon2); |
| 1978 | 1978 |
//heterotypic synonym of childTaxon2 |
| 1979 |
BotanicalName botSpecies3= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 1979 |
IBotanicalName botSpecies3= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
| 1980 | 1980 |
botSpecies3.setTitleCache("Hieracium lupium DC.", true);
|
| 1981 | 1981 |
botSpecies3.setGenusOrUninomial("Hieracium");
|
| 1982 | 1982 |
botSpecies3.setSpecificEpithet("lupium");
|
| ... | ... | |
| 1986 | 1986 |
childTaxon2.addSynonym(heteroSynonym, SynonymType.HETEROTYPIC_SYNONYM_OF()); |
| 1987 | 1987 |
service.saveOrUpdate(childTaxon2); |
| 1988 | 1988 |
//missaplied Name for childTaxon2 |
| 1989 |
BotanicalName missName= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()); |
|
| 1989 |
IBotanicalName missName= TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
| 1990 | 1990 |
missName.setTitleCache("Hieracium lupium DC.", true);
|
| 1991 | 1991 |
missName.setGenusOrUninomial("Hieracium");
|
| 1992 | 1992 |
missName.setSpecificEpithet("lupium");
|
| ... | ... | |
| 2026 | 2026 |
public Classification getTestClassification(String name){
|
| 2027 | 2027 |
return Classification.NewInstance(name); |
| 2028 | 2028 |
} |
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| 2033 | 2029 |
} |
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Also available in: Unified diff
ref #6368 remove TaxonNameBase subclasses