Revision e6d7b501
Added by Andreas Müller almost 7 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/caryophyllales/out/CsvNameExport.java | ||
|---|---|---|
| 33 | 33 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 34 | 34 |
import eu.etaxonomy.cdm.model.description.TextData; |
| 35 | 35 |
import eu.etaxonomy.cdm.model.location.NamedArea; |
| 36 |
import eu.etaxonomy.cdm.model.name.BotanicalName; |
|
| 37 | 36 |
import eu.etaxonomy.cdm.model.name.HomotypicalGroup; |
| 38 | 37 |
import eu.etaxonomy.cdm.model.name.HomotypicalGroupComparator; |
| 39 | 38 |
import eu.etaxonomy.cdm.model.name.IBotanicalName; |
| ... | ... | |
| 258 | 257 |
boolean isInvalidRel = false; |
| 259 | 258 |
for (NameRelationship nameRel: nameRelations){
|
| 260 | 259 |
// NameRelationship nameRel = nameRelations.iterator().next(); |
| 261 |
BotanicalName fromName = HibernateProxyHelper.deproxy(nameRel.getFromName(), BotanicalName.class);
|
|
| 260 |
IBotanicalName fromName = HibernateProxyHelper.deproxy(nameRel.getFromName(), IBotanicalName.class);
|
|
| 262 | 261 |
|
| 263 | 262 |
nameRel = HibernateProxyHelper.deproxy(nameRel, NameRelationship.class); |
| 264 | 263 |
nameRelType = nameRel.getType().getTitleCache(); |
| ... | ... | |
| 499 | 498 |
TaxonNode familyNode = getHigherNode(childNode, Rank.FAMILY()); |
| 500 | 499 |
Taxon taxon; |
| 501 | 500 |
String nameString; |
| 502 |
BotanicalName name; |
|
| 501 |
IBotanicalName name;
|
|
| 503 | 502 |
if (familyNode == null){
|
| 504 | 503 |
nameRecord.put("familyTaxon", null);
|
| 505 | 504 |
nameRecord.put("familyName", null);
|
| ... | ... | |
| 514 | 513 |
//if publish flag is set |
| 515 | 514 |
|
| 516 | 515 |
// if (taxon.isPublish()){
|
| 517 |
name = HibernateProxyHelper.deproxy(taxon.getName(), BotanicalName.class); |
|
| 516 |
name = HibernateProxyHelper.deproxy(taxon.getName(), IBotanicalName.class);
|
|
| 518 | 517 |
nameRecord.put("familyName", name.getNameCache());
|
| 519 | 518 |
extractDescriptions(nameRecord, taxon, Feature.INTRODUCTION(), "descriptionsFam", state); |
| 520 | 519 |
} |
| ... | ... | |
| 529 | 528 |
//if publish flag is set |
| 530 | 529 |
|
| 531 | 530 |
// if (taxon.isPublish()){
|
| 532 |
name = HibernateProxyHelper.deproxy(taxon.getName(), BotanicalName.class); |
|
| 531 |
name = HibernateProxyHelper.deproxy(taxon.getName(), IBotanicalName.class);
|
|
| 533 | 532 |
if (name.getNameCache() != null){
|
| 534 | 533 |
nameRecord.put("genusName", name.getNameCache());
|
| 535 | 534 |
}else{
|
| ... | ... | |
| 558 | 557 |
|
| 559 | 558 |
getTaxonRelations(nameRecord, taxon); |
| 560 | 559 |
|
| 561 |
name = HibernateProxyHelper.deproxy(getNameService().load(taxon.getName().getUuid()), BotanicalName.class); |
|
| 560 |
name = HibernateProxyHelper.deproxy(getNameService().load(taxon.getName().getUuid()), IBotanicalName.class);
|
|
| 562 | 561 |
nameRecord.put("childName",nameString);
|
| 563 | 562 |
nameRecord.put("nameId", String.valueOf(name.getId()));
|
| 564 | 563 |
nameRecord.put("nameCache", name.getNameCache());
|
| ... | ... | |
| 581 | 580 |
if (typeDes instanceof NameTypeDesignation){
|
| 582 | 581 |
NameTypeDesignation nameTypeDes = HibernateProxyHelper.deproxy(typeDes, NameTypeDesignation.class); |
| 583 | 582 |
|
| 584 |
BotanicalName typeName = HibernateProxyHelper.deproxy(nameTypeDes.getTypeName(), BotanicalName.class);
|
|
| 583 |
IBotanicalName typeName = HibernateProxyHelper.deproxy(nameTypeDes.getTypeName(), IBotanicalName.class);
|
|
| 585 | 584 |
if (typeName != null){
|
| 586 | 585 |
|
| 587 | 586 |
typeNameString = "<i>" + typeName.getNameCache() +"</i> " + typeName.getAuthorshipCache(); |
| ... | ... | |
| 601 | 600 |
List<Synonym> homotypicSynonyms; |
| 602 | 601 |
|
| 603 | 602 |
HomotypicalGroup group; |
| 604 |
BotanicalName synonymName; |
|
| 603 |
IBotanicalName synonymName;
|
|
| 605 | 604 |
String doubtfulTitleCache; |
| 606 | 605 |
for (Synonym synonym: taxon.getSynonyms()){
|
| 607 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), BotanicalName.class); |
|
| 606 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), IBotanicalName.class);
|
|
| 608 | 607 |
group = HibernateProxyHelper.deproxy(synonymName.getHomotypicalGroup(), HomotypicalGroup.class); |
| 609 | 608 |
synonymName.generateFullTitle(); |
| 610 | 609 |
if (synonym.isDoubtful()){
|
| 611 | 610 |
if (!synonymName.getFullTitleCache().startsWith("?")){
|
| 612 | 611 |
doubtfulTitleCache = "?" + synonymName.getFullTitleCache(); |
| 613 |
synonymName = (BotanicalName) synonymName.clone(); |
|
| 612 |
synonymName = (IBotanicalName) synonymName.clone();
|
|
| 614 | 613 |
synonymName.setFullTitleCache(doubtfulTitleCache, true); |
| 615 | 614 |
} |
| 616 | 615 |
} |
| ... | ... | |
| 643 | 642 |
status = HibernateProxyHelper.deproxy(synonym.getName().getStatus().iterator().next(),NomenclaturalStatus.class); |
| 644 | 643 |
if (status.getType().isInvalidType()){
|
| 645 | 644 |
heterotypicalSynonyms.append(" <invalid> ");
|
| 646 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), BotanicalName.class); |
|
| 645 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), IBotanicalName.class);
|
|
| 647 | 646 |
|
| 648 | 647 |
synonymString = createSynonymNameString(synonymName, state.getConfig().isInvalidNamesQuoted()) ; |
| 649 | 648 |
heterotypicalSynonyms.append(synonymString); |
| ... | ... | |
| 656 | 655 |
heterotypicalSynonyms.append(" <homonym> ");
|
| 657 | 656 |
} |
| 658 | 657 |
first = false; |
| 659 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), BotanicalName.class); |
|
| 658 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), IBotanicalName.class);
|
|
| 660 | 659 |
synonymString = createSynonymNameString(synonymName, false); |
| 661 | 660 |
heterotypicalSynonyms.append(synonymString); |
| 662 | 661 |
} |
| ... | ... | |
| 671 | 670 |
status = HibernateProxyHelper.deproxy(synonym.getName().getStatus().iterator().next(),NomenclaturalStatus.class); |
| 672 | 671 |
if (status.getType().isInvalidType()){
|
| 673 | 672 |
homotypicalSynonyms.append(" <invalid> ");
|
| 674 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), BotanicalName.class); |
|
| 673 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), IBotanicalName.class);
|
|
| 675 | 674 |
synonymString = createSynonymNameString(synonymName, true); |
| 676 | 675 |
homotypicalSynonyms.append(synonymString); |
| 677 | 676 |
continue; |
| ... | ... | |
| 683 | 682 |
homotypicalSynonyms.append(" <homonym> ");
|
| 684 | 683 |
} |
| 685 | 684 |
first = false; |
| 686 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), BotanicalName.class); |
|
| 685 |
synonymName = HibernateProxyHelper.deproxy(synonym.getName(), IBotanicalName.class);
|
|
| 687 | 686 |
|
| 688 | 687 |
synonymString = createSynonymNameString(synonymName, false); |
| 689 | 688 |
|
| ... | ... | |
| 702 | 701 |
String relNameString = null; |
| 703 | 702 |
if (nameRelations.size()>0){
|
| 704 | 703 |
NameRelationship nameRel = nameRelations.iterator().next(); |
| 705 |
BotanicalName fromName = HibernateProxyHelper.deproxy(nameRel.getFromName(), BotanicalName.class);
|
|
| 704 |
IBotanicalName fromName = HibernateProxyHelper.deproxy(nameRel.getFromName(), IBotanicalName.class);
|
|
| 706 | 705 |
if (fromName.equals(taxon.getName())){
|
| 707 | 706 |
relatedName = nameRel.getToName(); |
| 708 | 707 |
|
Also available in: Unified diff
ref #6368 remove TaxonNameBase subclasses