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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.facade;
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import java.beans.PropertyChangeEvent;
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import java.beans.PropertyChangeListener;
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import java.net.URI;
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import java.text.ParseException;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import javax.persistence.Transient;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.service.IOccurrenceService;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.common.UTF8;
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import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.IOriginalSource;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.Identifier;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.common.OriginalSourceType;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.TextData;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.Point;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.occurrence.Collection;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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import eu.etaxonomy.cdm.model.reference.Reference;
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/**
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* This class is a facade to the eu.etaxonomy.cdm.model.occurrence package from
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* a specimen based view. It does not support all functionality available in the
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* occurrence package.<BR>
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* The most significant restriction is that a specimen may derive only from one
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* direct derivation event and there must be only one field unit
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* (gathering event) it derives from.<BR>
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*
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* @author a.mueller
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* @date 14.05.2010
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*/
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public class DerivedUnitFacade {
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private static final String METER = "m";
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DerivedUnitFacade.class);
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private static final String notSupportMessage = "A specimen facade not supported exception has occurred at a place where this should not have happened. The developer should implement not support check properly during class initialization ";
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private static final boolean CREATE = true;
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private static final boolean CREATE_NOT = false;
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private final DerivedUnitFacadeConfigurator config;
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private final Map<PropertyChangeListener, CdmBase> listeners = new HashMap<>();
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// Either fieldUnit or derivedUnit must not be null.
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private FieldUnit fieldUnit;
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private final DerivedUnit derivedUnit;
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// media - the text data holding the media
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private TextData derivedUnitMediaTextData;
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private TextData fieldObjectMediaTextData;
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private TextData ecology;
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private TextData plantDescription;
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private TextData lifeform;
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/**
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* Creates a derived unit facade for a new derived unit of type
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* <code>type</code>.
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*
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* @param type
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* @return
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*/
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public static DerivedUnitFacade NewInstance(SpecimenOrObservationType type) {
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return new DerivedUnitFacade(type, null, null);
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}
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/**
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* Creates a derived unit facade for a new derived unit of type
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* <code>type</code>.
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*
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* @param type
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* @return
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*/
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public static DerivedUnitFacade NewInstance(SpecimenOrObservationType type, FieldUnit fieldUnit) {
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return new DerivedUnitFacade(type, fieldUnit, null);
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}
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/**
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* Creates a derived unit facade for a new derived unit of type
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* <code>type</code>.
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*
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* @param type
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* @param fieldUnit the field unit to use
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* @param config the facade configurator to use
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* //TODO are there any ambiguities to solve with defining a field unit or a configurator
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* @return
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*/
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public static DerivedUnitFacade NewInstance(SpecimenOrObservationType type, FieldUnit fieldUnit, DerivedUnitFacadeConfigurator config) {
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return new DerivedUnitFacade(type, fieldUnit, config);
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}
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/**
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* Creates a derived unit facade for a given derived unit using the default
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* configuration.
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*
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* @param derivedUnit
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* @return
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* @throws DerivedUnitFacadeNotSupportedException
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*/
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public static DerivedUnitFacade NewInstance(DerivedUnit derivedUnit)
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throws DerivedUnitFacadeNotSupportedException {
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return new DerivedUnitFacade(derivedUnit, null);
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}
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public static DerivedUnitFacade NewInstance(DerivedUnit derivedUnit,
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DerivedUnitFacadeConfigurator config)
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throws DerivedUnitFacadeNotSupportedException {
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return new DerivedUnitFacade(derivedUnit, config);
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}
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// ****************** CONSTRUCTOR ******************************************
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private DerivedUnitFacade(SpecimenOrObservationType type, FieldUnit fieldUnit, DerivedUnitFacadeConfigurator config) {
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if (config == null){
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config = DerivedUnitFacadeConfigurator.NewInstance();
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}
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this.config = config;
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// derivedUnit
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derivedUnit = getNewDerivedUnitInstance(type);
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//TODO parameter checking should be solved in a more generic way if we start using other entity facades
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if(derivedUnit==null && fieldUnit==null && type.isFieldUnit()){
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this.fieldUnit = getFieldUnit(CREATE);
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}
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setFieldUnit(fieldUnit);
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if (derivedUnit != null){
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setCacheStrategy();
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}else{
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setFieldUnitCacheStrategy();
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}
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}
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private DerivedUnit getNewDerivedUnitInstance(SpecimenOrObservationType type) {
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if (type.isFieldUnit()){
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return null;
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}else if(type.isAnyDerivedUnit()){
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return DerivedUnit.NewInstance(type);
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} else {
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String message = "Unknown specimen or observation type %s";
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message = String.format(message, type.getMessage());
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throw new IllegalStateException(message);
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}
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}
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private DerivedUnitFacade(DerivedUnit derivedUnit, DerivedUnitFacadeConfigurator config)
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throws DerivedUnitFacadeNotSupportedException {
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if(derivedUnit==null){
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throw new IllegalArgumentException("DerivedUnit must not be null");
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}
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if (config == null) {
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config = DerivedUnitFacadeConfigurator.NewInstance();
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}
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this.config = config;
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// derived unit
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this.derivedUnit = derivedUnit;
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// derivation event
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if (this.derivedUnit.getDerivedFrom() != null) {
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DerivationEvent derivationEvent = getDerivationEvent(CREATE);
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// fieldUnit
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Set<FieldUnit> fieldOriginals = getFieldUnitOriginals(derivationEvent, null);
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if (fieldOriginals.size() > 1) {
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throw new DerivedUnitFacadeNotSupportedException(
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"Specimen must not have more than 1 derivation event");
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} else if (fieldOriginals.size() == 0) {
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// fieldUnit = FieldUnit.NewInstance();
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} else if (fieldOriginals.size() == 1) {
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fieldUnit = fieldOriginals.iterator().next();
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// ###fieldUnit =
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// getInitializedFieldUnit(fieldUnit);
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if (config.isFirePropertyChangeEvents()){
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addNewEventPropagationListener(fieldUnit);
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}
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} else {
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throw new IllegalStateException("Illegal state");
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}
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}
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this.derivedUnitMediaTextData = inititializeTextDataWithSupportTest(Feature.IMAGE(), this.derivedUnit, false, true);
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fieldObjectMediaTextData = initializeFieldObjectTextDataWithSupportTest(Feature.IMAGE(), false, true);
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//direct media have been removed from specimenorobservationbase #3597
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// // handle derivedUnit.getMedia()
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// if (derivedUnit.getMedia().size() > 0) {
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// // TODO better changed model here to allow only one place for images
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// if (this.config.isMoveDerivedUnitMediaToGallery()) {
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// Set<Media> mediaSet = derivedUnit.getMedia();
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// for (Media media : mediaSet) {
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// this.addDerivedUnitMedia(media);
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// }
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// mediaSet.removeAll(getDerivedUnitMedia());
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// } else {
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// throw new DerivedUnitFacadeNotSupportedException(
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// "Specimen may not have direct media. Only (one) image gallery is allowed");
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// }
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// }
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//
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// // handle fieldUnit.getMedia()
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// if (fieldUnit != null && fieldUnit.getMedia() != null
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// && fieldUnit.getMedia().size() > 0) {
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// // TODO better changed model here to allow only one place for images
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// if (this.config.isMoveFieldObjectMediaToGallery()) {
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// Set<Media> mediaSet = fieldUnit.getMedia();
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// for (Media media : mediaSet) {
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// this.addFieldObjectMedia(media);
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// }
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// mediaSet.removeAll(getFieldObjectMedia());
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// } else {
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// throw new DerivedUnitFacadeNotSupportedException(
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// "Field object may not have direct media. Only (one) image gallery is allowed");
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// }
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// }
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// test if descriptions are supported
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ecology = initializeFieldObjectTextDataWithSupportTest(
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Feature.ECOLOGY(), false, false);
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plantDescription = initializeFieldObjectTextDataWithSupportTest(
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Feature.DESCRIPTION(), false, false);
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setCacheStrategy();
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}
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private DerivedUnit getInitializedDerivedUnit(
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DerivedUnit derivedUnit) {
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IOccurrenceService occurrenceService = this.config
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.getOccurrenceService();
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if (occurrenceService == null) {
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return derivedUnit;
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}
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List<String> propertyPaths = this.config.getPropertyPaths();
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if (propertyPaths == null) {
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return derivedUnit;
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}
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propertyPaths = getDerivedUnitPropertyPaths(propertyPaths);
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DerivedUnit result = (DerivedUnit) occurrenceService.load(
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derivedUnit.getUuid(), propertyPaths);
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return result;
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}
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/**
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* Initializes the derived unit according to the configuartions property
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* path. If the property path is <code>null</code> or no occurrence service
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* is given the returned object is the same as the input parameter.
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*
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* @param fieldUnit
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* @return
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*/
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private FieldUnit getInitializedFieldUnit(FieldUnit fieldUnit) {
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IOccurrenceService occurrenceService = this.config
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.getOccurrenceService();
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if (occurrenceService == null) {
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return fieldUnit;
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}
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List<String> propertyPaths = this.config.getPropertyPaths();
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if (propertyPaths == null) {
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return fieldUnit;
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}
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propertyPaths = getFieldObjectPropertyPaths(propertyPaths);
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FieldUnit result = (FieldUnit) occurrenceService.load(
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fieldUnit.getUuid(), propertyPaths);
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return result;
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}
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/**
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* Transforms the property paths in a way that the facade is handled just
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* like an ordinary CdmBase object.<BR>
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* E.g. a property path "collectinAreas" will be translated into
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* gatheringEvent.collectingAreas
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*
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* @param propertyPaths
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* @return
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*/
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private List<String> getFieldObjectPropertyPaths(List<String> propertyPaths) {
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List<String> result = new ArrayList<String>();
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for (String facadePath : propertyPaths) {
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// collecting areas (named area)
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if (facadePath.startsWith("collectingAreas")) {
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facadePath = "gatheringEvent." + facadePath;
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result.add(facadePath);
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}
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// collector (agentBase)
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else if (facadePath.startsWith("collector")) {
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facadePath = facadePath.replace("collector",
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"gatheringEvent.actor");
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result.add(facadePath);
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}
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// exactLocation (agentBase)
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else if (facadePath.startsWith("exactLocation")) {
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facadePath = "gatheringEvent." + facadePath;
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result.add(facadePath);
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}
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// gatheringPeriod (TimePeriod)
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else if (facadePath.startsWith("gatheringPeriod")) {
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facadePath = facadePath.replace("gatheringPeriod",
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"gatheringEvent.timeperiod");
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result.add(facadePath);
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}
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// (locality/ localityLanguage , LanguageString)
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else if (facadePath.startsWith("locality")) {
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facadePath = "gatheringEvent." + facadePath;
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result.add(facadePath);
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}
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// *********** FIELD OBJECT ************
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// fieldObjectDefinitions (Map<language, languageString)
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else if (facadePath.startsWith("fieldObjectDefinitions")) {
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// TODO or definition ???
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facadePath = facadePath.replace("fieldObjectDefinitions",
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"description");
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|
result.add(facadePath);
|
|
364
|
}
|
|
365
|
// fieldObjectMedia (Media)
|
|
366
|
else if (facadePath.startsWith("fieldObjectMedia")) {
|
|
367
|
// TODO ???
|
|
368
|
facadePath = facadePath.replace("fieldObjectMedia",
|
|
369
|
"descriptions.elements.media");
|
|
370
|
result.add(facadePath);
|
|
371
|
}
|
|
372
|
|
|
373
|
// Gathering Event will always be added
|
|
374
|
result.add("gatheringEvent");
|
|
375
|
|
|
376
|
}
|
|
377
|
|
|
378
|
/*
|
|
379
|
* Gathering Event ==================== - gatheringEvent
|
|
380
|
* (GatheringEvent)
|
|
381
|
*
|
|
382
|
* Field Object ================= - ecology/ ecologyAll (String) ??? -
|
|
383
|
* plant description (like ecology)
|
|
384
|
*
|
|
385
|
* - fieldObjectImageGallery (SpecimenDescription) - is automatically
|
|
386
|
* initialized via fieldObjectMedia
|
|
387
|
*/
|
|
388
|
|
|
389
|
return result;
|
|
390
|
}
|
|
391
|
|
|
392
|
/**
|
|
393
|
* Transforms the property paths in a way that the facade is handled just
|
|
394
|
* like an ordinary CdmBase object.<BR>
|
|
395
|
* E.g. a property path "collectinAreas" will be translated into
|
|
396
|
* gatheringEvent.collectingAreas
|
|
397
|
*
|
|
398
|
* Not needed (?) as the facade works with REST service property paths
|
|
399
|
* without using this method.
|
|
400
|
*
|
|
401
|
* @param propertyPaths
|
|
402
|
* @return
|
|
403
|
*/
|
|
404
|
private List<String> getDerivedUnitPropertyPaths(List<String> propertyPaths) {
|
|
405
|
List<String> result = new ArrayList<String>();
|
|
406
|
for (String facadePath : propertyPaths) {
|
|
407
|
// determinations (DeterminationEvent)
|
|
408
|
if (facadePath.startsWith("determinations")) {
|
|
409
|
facadePath = "" + facadePath; // no change
|
|
410
|
result.add(facadePath);
|
|
411
|
}
|
|
412
|
// storedUnder (TaxonName)
|
|
413
|
else if (facadePath.startsWith("storedUnder")) {
|
|
414
|
facadePath = "" + facadePath; // no change
|
|
415
|
result.add(facadePath);
|
|
416
|
}
|
|
417
|
// sources (IdentifiableSource)
|
|
418
|
else if (facadePath.startsWith("sources")) {
|
|
419
|
facadePath = "" + facadePath; // no change
|
|
420
|
result.add(facadePath);
|
|
421
|
}
|
|
422
|
// collection (Collection)
|
|
423
|
else if (facadePath.startsWith("collection")) {
|
|
424
|
facadePath = "" + facadePath; // no change
|
|
425
|
result.add(facadePath);
|
|
426
|
}
|
|
427
|
// (locality/ localityLanguage , LanguageString)
|
|
428
|
else if (facadePath.startsWith("locality")) {
|
|
429
|
facadePath = "gatheringEvent." + facadePath;
|
|
430
|
result.add(facadePath);
|
|
431
|
}
|
|
432
|
|
|
433
|
// *********** FIELD OBJECT ************
|
|
434
|
// derivedUnitDefinitions (Map<language, languageString)
|
|
435
|
else if (facadePath.startsWith("derivedUnitDefinitions")) {
|
|
436
|
// TODO or definition ???
|
|
437
|
facadePath = facadePath.replace("derivedUnitDefinitions",
|
|
438
|
"description");
|
|
439
|
result.add(facadePath);
|
|
440
|
}
|
|
441
|
|
|
442
|
// derivedUnitMedia (Media)
|
|
443
|
else if (facadePath.startsWith("derivedUnitMedia")) {
|
|
444
|
// TODO ???
|
|
445
|
facadePath = facadePath.replace("derivedUnitMedia",
|
|
446
|
"descriptions.elements.media");
|
|
447
|
result.add(facadePath);
|
|
448
|
}
|
|
449
|
|
|
450
|
}
|
|
451
|
|
|
452
|
/*
|
|
453
|
* //TODO Derived Unit =====================
|
|
454
|
*
|
|
455
|
* - derivedUnitImageGallery (SpecimenDescription) - is automatically
|
|
456
|
* initialized via derivedUnitMedia
|
|
457
|
*
|
|
458
|
* - derivationEvent (DerivationEvent) - will always be initialized -
|
|
459
|
* duplicates (??? Specimen???) ???
|
|
460
|
*/
|
|
461
|
|
|
462
|
return result;
|
|
463
|
}
|
|
464
|
|
|
465
|
/**
|
|
466
|
*
|
|
467
|
*/
|
|
468
|
private void setCacheStrategy() {
|
|
469
|
if (derivedUnit == null) {
|
|
470
|
throw new NullPointerException(
|
|
471
|
"Facade's derviedUnit must not be null to set cache strategy");
|
|
472
|
}else{
|
|
473
|
derivedUnit.setCacheStrategy(new DerivedUnitFacadeCacheStrategy());
|
|
474
|
setFieldUnitCacheStrategy();
|
|
475
|
}
|
|
476
|
}
|
|
477
|
|
|
478
|
private void setFieldUnitCacheStrategy() {
|
|
479
|
if (this.hasFieldObject()){
|
|
480
|
DerivedUnitFacadeFieldUnitCacheStrategy strategy = new DerivedUnitFacadeFieldUnitCacheStrategy();
|
|
481
|
this.fieldUnit.setCacheStrategy(strategy);
|
|
482
|
}
|
|
483
|
}
|
|
484
|
|
|
485
|
/**
|
|
486
|
* @param feature
|
|
487
|
* @param createIfNotExists
|
|
488
|
* @param isImageGallery
|
|
489
|
* @return
|
|
490
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
491
|
*/
|
|
492
|
private TextData initializeFieldObjectTextDataWithSupportTest(
|
|
493
|
Feature feature, boolean createIfNotExists, boolean isImageGallery)
|
|
494
|
throws DerivedUnitFacadeNotSupportedException {
|
|
495
|
// field object
|
|
496
|
FieldUnit fieldObject = getFieldUnit(createIfNotExists);
|
|
497
|
if (fieldObject == null) {
|
|
498
|
return null;
|
|
499
|
}
|
|
500
|
return inititializeTextDataWithSupportTest(feature, fieldObject,
|
|
501
|
createIfNotExists, isImageGallery);
|
|
502
|
}
|
|
503
|
|
|
504
|
/**
|
|
505
|
* @param feature
|
|
506
|
* @param specimen
|
|
507
|
* @param createIfNotExists
|
|
508
|
* @param isImageGallery
|
|
509
|
* @return
|
|
510
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
511
|
*/
|
|
512
|
private TextData inititializeTextDataWithSupportTest(Feature feature,
|
|
513
|
SpecimenOrObservationBase<?> specimen, boolean createIfNotExists,
|
|
514
|
boolean isImageGallery)
|
|
515
|
throws DerivedUnitFacadeNotSupportedException {
|
|
516
|
if (feature == null) {
|
|
517
|
return null;
|
|
518
|
}
|
|
519
|
TextData textData = null;
|
|
520
|
if (createIfNotExists) {
|
|
521
|
textData = TextData.NewInstance(feature);
|
|
522
|
}
|
|
523
|
|
|
524
|
Set<SpecimenDescription> descriptions;
|
|
525
|
if (isImageGallery) {
|
|
526
|
descriptions = specimen.getSpecimenDescriptionImageGallery();
|
|
527
|
} else {
|
|
528
|
descriptions = specimen.getSpecimenDescriptions(false);
|
|
529
|
}
|
|
530
|
// no description exists yet for this specimen
|
|
531
|
if (descriptions.size() == 0) {
|
|
532
|
if (createIfNotExists) {
|
|
533
|
SpecimenDescription newSpecimenDescription = SpecimenDescription
|
|
534
|
.NewInstance(specimen);
|
|
535
|
newSpecimenDescription.addElement(textData);
|
|
536
|
newSpecimenDescription.setImageGallery(isImageGallery);
|
|
537
|
return textData;
|
|
538
|
} else {
|
|
539
|
return null;
|
|
540
|
}
|
|
541
|
}
|
|
542
|
// description already exists
|
|
543
|
Set<DescriptionElementBase> existingTextData = new HashSet<>();
|
|
544
|
for (SpecimenDescription description : descriptions) {
|
|
545
|
// collect all existing text data
|
|
546
|
for (DescriptionElementBase element : description.getElements()) {
|
|
547
|
if (element.isInstanceOf(TextData.class)
|
|
548
|
&& (feature.equals(element.getFeature()) || isImageGallery)) {
|
|
549
|
existingTextData.add(element);
|
|
550
|
}
|
|
551
|
}
|
|
552
|
}
|
|
553
|
// use existing text data if exactly one exists
|
|
554
|
if (existingTextData.size() > 1) {
|
|
555
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
556
|
"Specimen facade does not support more than one description text data of type "
|
|
557
|
+ feature.getLabel());
|
|
558
|
|
|
559
|
} else if (existingTextData.size() == 1) {
|
|
560
|
return CdmBase.deproxy(existingTextData.iterator().next(),
|
|
561
|
TextData.class);
|
|
562
|
} else {
|
|
563
|
if (createIfNotExists) {
|
|
564
|
SpecimenDescription description = descriptions.iterator()
|
|
565
|
.next();
|
|
566
|
description.addElement(textData);
|
|
567
|
}
|
|
568
|
return textData;
|
|
569
|
}
|
|
570
|
}
|
|
571
|
|
|
572
|
/**
|
|
573
|
* Tests if a given image gallery is supported by the derived unit facade.
|
|
574
|
* It returns the only text data attached to the given image gallery. If the
|
|
575
|
* given image gallery does not have text data attached, it is created and
|
|
576
|
* attached.
|
|
577
|
*
|
|
578
|
* @param imageGallery
|
|
579
|
* @return
|
|
580
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
581
|
*/
|
|
582
|
private TextData testImageGallery(SpecimenDescription imageGallery)
|
|
583
|
throws DerivedUnitFacadeNotSupportedException {
|
|
584
|
if (imageGallery.isImageGallery() == false) {
|
|
585
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
586
|
"Image gallery needs to have image gallery flag set");
|
|
587
|
}
|
|
588
|
if (imageGallery.getElements().size() > 1) {
|
|
589
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
590
|
"Image gallery must not have more then one description element");
|
|
591
|
}
|
|
592
|
TextData textData;
|
|
593
|
if (imageGallery.getElements().size() == 0) {
|
|
594
|
textData = TextData.NewInstance(Feature.IMAGE());
|
|
595
|
imageGallery.addElement(textData);
|
|
596
|
} else {
|
|
597
|
if (!imageGallery.getElements().iterator().next()
|
|
598
|
.isInstanceOf(TextData.class)) {
|
|
599
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
600
|
"Image gallery must only have TextData as element");
|
|
601
|
} else {
|
|
602
|
textData = CdmBase.deproxy(imageGallery.getElements()
|
|
603
|
.iterator().next(), TextData.class);
|
|
604
|
}
|
|
605
|
}
|
|
606
|
return textData;
|
|
607
|
}
|
|
608
|
|
|
609
|
// ************************** METHODS
|
|
610
|
// *****************************************
|
|
611
|
|
|
612
|
private TextData getDerivedUnitImageGalleryTextData(
|
|
613
|
boolean createIfNotExists)
|
|
614
|
throws DerivedUnitFacadeNotSupportedException {
|
|
615
|
if (this.derivedUnitMediaTextData == null && createIfNotExists) {
|
|
616
|
this.derivedUnitMediaTextData = getImageGalleryTextData(
|
|
617
|
derivedUnit, "Specimen");
|
|
618
|
}
|
|
619
|
return this.derivedUnitMediaTextData;
|
|
620
|
}
|
|
621
|
|
|
622
|
private TextData getObservationImageGalleryTextData(
|
|
623
|
boolean createIfNotExists)
|
|
624
|
throws DerivedUnitFacadeNotSupportedException {
|
|
625
|
if (this.fieldObjectMediaTextData == null && createIfNotExists) {
|
|
626
|
this.fieldObjectMediaTextData = getImageGalleryTextData(fieldUnit, "Field unit");
|
|
627
|
}
|
|
628
|
return this.fieldObjectMediaTextData;
|
|
629
|
}
|
|
630
|
|
|
631
|
/**
|
|
632
|
* @param derivationEvent
|
|
633
|
* @return
|
|
634
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
635
|
*/
|
|
636
|
private Set<FieldUnit> getFieldUnitOriginals(
|
|
637
|
DerivationEvent derivationEvent,
|
|
638
|
Set<SpecimenOrObservationBase> recursionAvoidSet)
|
|
639
|
throws DerivedUnitFacadeNotSupportedException {
|
|
640
|
if (recursionAvoidSet == null) {
|
|
641
|
recursionAvoidSet = new HashSet<>();
|
|
642
|
}
|
|
643
|
Set<FieldUnit> result = new HashSet<>();
|
|
644
|
Set<SpecimenOrObservationBase> originals = derivationEvent.getOriginals();
|
|
645
|
for (SpecimenOrObservationBase original : originals) {
|
|
646
|
if (original.isInstanceOf(FieldUnit.class)) {
|
|
647
|
result.add(CdmBase.deproxy(original, FieldUnit.class));
|
|
648
|
} else if (original.isInstanceOf(DerivedUnit.class)) {
|
|
649
|
// if specimen has already been tested exclude it from further
|
|
650
|
// recursion
|
|
651
|
if (recursionAvoidSet.contains(original)) {
|
|
652
|
continue;
|
|
653
|
}
|
|
654
|
DerivedUnit derivedUnit = CdmBase.deproxy(original, DerivedUnit.class);
|
|
655
|
DerivationEvent originalDerivation = derivedUnit.getDerivedFrom();
|
|
656
|
// Set<DerivationEvent> derivationEvents =
|
|
657
|
// original.getDerivationEvents();
|
|
658
|
// for (DerivationEvent originalDerivation : derivationEvents){
|
|
659
|
if(originalDerivation!=null){
|
|
660
|
Set<FieldUnit> fieldUnits = getFieldUnitOriginals(
|
|
661
|
originalDerivation, recursionAvoidSet);
|
|
662
|
result.addAll(fieldUnits);
|
|
663
|
}
|
|
664
|
// }
|
|
665
|
} else {
|
|
666
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
667
|
"Unhandled specimen or observation base type: "
|
|
668
|
+ original.getClass().getName());
|
|
669
|
}
|
|
670
|
|
|
671
|
}
|
|
672
|
return result;
|
|
673
|
}
|
|
674
|
|
|
675
|
// *********** MEDIA METHODS ******************************
|
|
676
|
|
|
677
|
// /**
|
|
678
|
// * Returns the media list for a specimen. Throws an exception if the
|
|
679
|
// existing specimen descriptions
|
|
680
|
// * are not supported by this facade.
|
|
681
|
// * @param specimen the specimen the media belongs to
|
|
682
|
// * @param specimenExceptionText text describing the specimen for exception
|
|
683
|
// messages
|
|
684
|
// * @return
|
|
685
|
// * @throws DerivedUnitFacadeNotSupportedException
|
|
686
|
// */
|
|
687
|
// private List<Media> getImageGalleryMedia(SpecimenOrObservationBase
|
|
688
|
// specimen, String specimenExceptionText) throws
|
|
689
|
// DerivedUnitFacadeNotSupportedException{
|
|
690
|
// List<Media> result;
|
|
691
|
// SpecimenDescription imageGallery =
|
|
692
|
// getImageGalleryWithSupportTest(specimen, specimenExceptionText, true);
|
|
693
|
// TextData textData = getImageTextDataWithSupportTest(imageGallery,
|
|
694
|
// specimenExceptionText);
|
|
695
|
// result = textData.getMedia();
|
|
696
|
// return result;
|
|
697
|
// }
|
|
698
|
|
|
699
|
/**
|
|
700
|
* Returns the media list for a specimen. Throws an exception if the
|
|
701
|
* existing specimen descriptions are not supported by this facade.
|
|
702
|
*
|
|
703
|
* @param specimen
|
|
704
|
* the specimen the media belongs to
|
|
705
|
* @param specimenExceptionText
|
|
706
|
* text describing the specimen for exception messages
|
|
707
|
* @return
|
|
708
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
709
|
*/
|
|
710
|
private TextData getImageGalleryTextData(SpecimenOrObservationBase specimen, String specimenExceptionText)
|
|
711
|
throws DerivedUnitFacadeNotSupportedException {
|
|
712
|
TextData result;
|
|
713
|
SpecimenDescription imageGallery = getImageGalleryWithSupportTest(
|
|
714
|
specimen, specimenExceptionText, true);
|
|
715
|
result = getImageTextDataWithSupportTest(imageGallery,
|
|
716
|
specimenExceptionText);
|
|
717
|
return result;
|
|
718
|
}
|
|
719
|
|
|
720
|
/**
|
|
721
|
* Returns the image gallery of the according specimen. Throws an exception
|
|
722
|
* if the attached image gallerie(s) are not supported by this facade. If no
|
|
723
|
* image gallery exists a new one is created if
|
|
724
|
* <code>createNewIfNotExists</code> is true and if specimen is not
|
|
725
|
* <code>null</code>.
|
|
726
|
*
|
|
727
|
* @param specimen
|
|
728
|
* @param specimenText
|
|
729
|
* @param createNewIfNotExists
|
|
730
|
* @return
|
|
731
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
732
|
*/
|
|
733
|
private SpecimenDescription getImageGalleryWithSupportTest(
|
|
734
|
SpecimenOrObservationBase<?> specimen, String specimenText,
|
|
735
|
boolean createNewIfNotExists)
|
|
736
|
throws DerivedUnitFacadeNotSupportedException {
|
|
737
|
if (specimen == null) {
|
|
738
|
return null;
|
|
739
|
}
|
|
740
|
SpecimenDescription imageGallery;
|
|
741
|
if (hasMultipleImageGalleries(specimen)) {
|
|
742
|
throw new DerivedUnitFacadeNotSupportedException(specimenText
|
|
743
|
+ " must not have more than 1 image gallery");
|
|
744
|
} else {
|
|
745
|
imageGallery = getImageGallery(specimen, createNewIfNotExists);
|
|
746
|
getImageTextDataWithSupportTest(imageGallery, specimenText);
|
|
747
|
}
|
|
748
|
return imageGallery;
|
|
749
|
}
|
|
750
|
|
|
751
|
/**
|
|
752
|
* Returns the media holding text data element of the image gallery. Throws
|
|
753
|
* an exception if multiple such text data already exist. Creates a new text
|
|
754
|
* data if none exists and adds it to the image gallery. If image gallery is
|
|
755
|
* <code>null</code> nothing happens.
|
|
756
|
*
|
|
757
|
* @param imageGallery
|
|
758
|
* @param textData
|
|
759
|
* @return
|
|
760
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
761
|
*/
|
|
762
|
private TextData getImageTextDataWithSupportTest(
|
|
763
|
SpecimenDescription imageGallery, String specimenText)
|
|
764
|
throws DerivedUnitFacadeNotSupportedException {
|
|
765
|
if (imageGallery == null) {
|
|
766
|
return null;
|
|
767
|
}
|
|
768
|
TextData textData = null;
|
|
769
|
for (DescriptionElementBase element : imageGallery.getElements()) {
|
|
770
|
if (element.isInstanceOf(TextData.class)
|
|
771
|
&& element.getFeature().equals(Feature.IMAGE())) {
|
|
772
|
if (textData != null) {
|
|
773
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
774
|
specimenText
|
|
775
|
+ " must not have more than 1 image text data element in image gallery");
|
|
776
|
}
|
|
777
|
textData = CdmBase.deproxy(element, TextData.class);
|
|
778
|
}
|
|
779
|
}
|
|
780
|
if (textData == null) {
|
|
781
|
textData = TextData.NewInstance(Feature.IMAGE());
|
|
782
|
imageGallery.addElement(textData);
|
|
783
|
}
|
|
784
|
return textData;
|
|
785
|
}
|
|
786
|
|
|
787
|
/**
|
|
788
|
* Checks, if a specimen belongs to more than one description that is an
|
|
789
|
* image gallery
|
|
790
|
*
|
|
791
|
* @param derivedUnit
|
|
792
|
* @return
|
|
793
|
*/
|
|
794
|
private boolean hasMultipleImageGalleries(
|
|
795
|
SpecimenOrObservationBase<?> derivedUnit) {
|
|
796
|
int count = 0;
|
|
797
|
Set<SpecimenDescription> descriptions = derivedUnit
|
|
798
|
.getSpecimenDescriptions();
|
|
799
|
for (SpecimenDescription description : descriptions) {
|
|
800
|
if (description.isImageGallery()) {
|
|
801
|
count++;
|
|
802
|
}
|
|
803
|
}
|
|
804
|
return (count > 1);
|
|
805
|
}
|
|
806
|
|
|
807
|
/**
|
|
808
|
* Returns the image gallery for a specimen. If there are multiple specimen
|
|
809
|
* descriptions marked as image galleries an arbitrary one is chosen. If no
|
|
810
|
* image gallery exists, a new one is created if
|
|
811
|
* <code>createNewIfNotExists</code> is <code>true</code>.<Br>
|
|
812
|
* If specimen is <code>null</code> a null pointer exception is thrown.
|
|
813
|
*
|
|
814
|
* @param createNewIfNotExists
|
|
815
|
* @return
|
|
816
|
*/
|
|
817
|
private SpecimenDescription getImageGallery(SpecimenOrObservationBase<?> specimen, boolean createIfNotExists) {
|
|
818
|
SpecimenDescription result = null;
|
|
819
|
Set<SpecimenDescription> descriptions = specimen.getSpecimenDescriptions();
|
|
820
|
for (SpecimenDescription description : descriptions) {
|
|
821
|
if (description.isImageGallery()) {
|
|
822
|
result = description;
|
|
823
|
break;
|
|
824
|
}
|
|
825
|
}
|
|
826
|
if (result == null && createIfNotExists) {
|
|
827
|
result = SpecimenDescription.NewInstance(specimen);
|
|
828
|
result.setImageGallery(true);
|
|
829
|
}
|
|
830
|
return result;
|
|
831
|
}
|
|
832
|
|
|
833
|
/**
|
|
834
|
* Adds a media to the specimens image gallery. If media is
|
|
835
|
* <code>null</code> nothing happens.
|
|
836
|
*
|
|
837
|
* @param media
|
|
838
|
* @param specimen
|
|
839
|
* @return true if media is not null (as specified by
|
|
840
|
* {@link java.util.Collection#add(Object) Collection.add(E e)}
|
|
841
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
842
|
*/
|
|
843
|
private boolean addMedia(Media media, SpecimenOrObservationBase<?> specimen) throws DerivedUnitFacadeNotSupportedException {
|
|
844
|
if (media != null) {
|
|
845
|
List<Media> mediaList = getMediaList(specimen, true);
|
|
846
|
if (! mediaList.contains(media)){
|
|
847
|
return mediaList.add(media);
|
|
848
|
}else{
|
|
849
|
return true;
|
|
850
|
}
|
|
851
|
} else {
|
|
852
|
return false;
|
|
853
|
}
|
|
854
|
}
|
|
855
|
|
|
856
|
/**
|
|
857
|
* Removes a media from the specimens image gallery.
|
|
858
|
*
|
|
859
|
* @param media
|
|
860
|
* @param specimen
|
|
861
|
* @return true if an element was removed as a result of this call (as
|
|
862
|
* specified by {@link java.util.Collection#remove(Object)
|
|
863
|
* Collection.remove(E e)}
|
|
864
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
865
|
*/
|
|
866
|
private boolean removeMedia(Media media,
|
|
867
|
SpecimenOrObservationBase<?> specimen)
|
|
868
|
throws DerivedUnitFacadeNotSupportedException {
|
|
869
|
List<Media> mediaList = getMediaList(specimen, true);
|
|
870
|
return mediaList == null ? null : mediaList.remove(media);
|
|
871
|
}
|
|
872
|
|
|
873
|
private List<Media> getMediaList(SpecimenOrObservationBase<?> specimen, boolean createIfNotExists)
|
|
874
|
throws DerivedUnitFacadeNotSupportedException {
|
|
875
|
TextData textData = getMediaTextData(specimen, createIfNotExists);
|
|
876
|
return textData == null ? null : textData.getMedia();
|
|
877
|
}
|
|
878
|
|
|
879
|
/**
|
|
880
|
* Returns the one media list of a specimen which is part of the only image
|
|
881
|
* gallery that this specimen is part of.<BR>
|
|
882
|
* If these conditions are not hold an exception is thrwon.
|
|
883
|
*
|
|
884
|
* @param specimen
|
|
885
|
* @return
|
|
886
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
887
|
*/
|
|
888
|
// private List<Media> getMedia(SpecimenOrObservationBase<?> specimen)
|
|
889
|
// throws DerivedUnitFacadeNotSupportedException {
|
|
890
|
// if (specimen == null){
|
|
891
|
// return null;
|
|
892
|
// }
|
|
893
|
// if (specimen == this.derivedUnit){
|
|
894
|
// return getDerivedUnitImageGalleryMedia();
|
|
895
|
// }else if (specimen == this.fieldUnit){
|
|
896
|
// return getObservationImageGalleryTextData();
|
|
897
|
// }else{
|
|
898
|
// return getImageGalleryMedia(specimen, "Undefined specimen ");
|
|
899
|
// }
|
|
900
|
// }
|
|
901
|
|
|
902
|
/**
|
|
903
|
* Returns the one media list of a specimen which is part of the only image
|
|
904
|
* gallery that this specimen is part of.<BR>
|
|
905
|
* If these conditions are not hold an exception is thrown.
|
|
906
|
*
|
|
907
|
* @param specimen
|
|
908
|
* @return
|
|
909
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
910
|
*/
|
|
911
|
private TextData getMediaTextData(SpecimenOrObservationBase<?> specimen,
|
|
912
|
boolean createIfNotExists)
|
|
913
|
throws DerivedUnitFacadeNotSupportedException {
|
|
914
|
if (specimen == null) {
|
|
915
|
return null;
|
|
916
|
}
|
|
917
|
if (specimen == this.derivedUnit) {
|
|
918
|
return getDerivedUnitImageGalleryTextData(createIfNotExists);
|
|
919
|
} else if (specimen == this.fieldUnit) {
|
|
920
|
return getObservationImageGalleryTextData(createIfNotExists);
|
|
921
|
} else {
|
|
922
|
return getImageGalleryTextData(specimen, "Undefined specimen ");
|
|
923
|
}
|
|
924
|
}
|
|
925
|
|
|
926
|
// ****************** GETTER / SETTER / ADDER / REMOVER
|
|
927
|
// ***********************/
|
|
928
|
|
|
929
|
// ****************** Gathering Event *********************************/
|
|
930
|
|
|
931
|
// country
|
|
932
|
@Transient
|
|
933
|
public NamedArea getCountry() {
|
|
934
|
return (hasGatheringEvent() ? getGatheringEvent(true).getCountry()
|
|
935
|
: null);
|
|
936
|
}
|
|
937
|
|
|
938
|
public void setCountry(NamedArea country) {
|
|
939
|
getGatheringEvent(true).setCountry(country);
|
|
940
|
}
|
|
941
|
|
|
942
|
// Collecting area
|
|
943
|
public void addCollectingArea(NamedArea area) {
|
|
944
|
getGatheringEvent(true).addCollectingArea(area);
|
|
945
|
}
|
|
946
|
|
|
947
|
public void addCollectingAreas(java.util.Collection<NamedArea> areas) {
|
|
948
|
for (NamedArea area : areas) {
|
|
949
|
getGatheringEvent(true).addCollectingArea(area);
|
|
950
|
}
|
|
951
|
}
|
|
952
|
|
|
953
|
@Transient
|
|
954
|
public Set<NamedArea> getCollectingAreas() {
|
|
955
|
return (hasGatheringEvent() ? getGatheringEvent(true)
|
|
956
|
.getCollectingAreas() : null);
|
|
957
|
}
|
|
958
|
|
|
959
|
public void removeCollectingArea(NamedArea area) {
|
|
960
|
if (hasGatheringEvent()) {
|
|
961
|
getGatheringEvent(true).removeCollectingArea(area);
|
|
962
|
}
|
|
963
|
}
|
|
964
|
|
|
965
|
static final String ALTITUDE_POSTFIX = " m";
|
|
966
|
|
|
967
|
/**
|
|
968
|
* Returns the correctly formatted <code>absolute elevation</code> information.
|
|
969
|
* If absoluteElevationText is set, this will be returned,
|
|
970
|
* otherwise we absoluteElevation will be returned, followed by absoluteElevationMax
|
|
971
|
* if existing, separated by " - "
|
|
972
|
* @return
|
|
973
|
*/
|
|
974
|
@Transient
|
|
975
|
public String absoluteElevationToString() {
|
|
976
|
if (! hasGatheringEvent()){
|
|
977
|
return null;
|
|
978
|
}else{
|
|
979
|
GatheringEvent ev = getGatheringEvent(true);
|
|
980
|
if (StringUtils.isNotBlank(ev.getAbsoluteElevationText())){
|
|
981
|
return ev.getAbsoluteElevationText();
|
|
982
|
}else{
|
|
983
|
String text = ev.getAbsoluteElevationText();
|
|
984
|
Integer min = getAbsoluteElevation();
|
|
985
|
Integer max = getAbsoluteElevationMaximum();
|
|
986
|
return distanceString(min, max, text, METER);
|
|
987
|
}
|
|
988
|
}
|
|
989
|
}
|
|
990
|
|
|
991
|
|
|
992
|
/**
|
|
993
|
* meter above/below sea level of the surface
|
|
994
|
*
|
|
995
|
* @see #getAbsoluteElevationError()
|
|
996
|
* @see #getAbsoluteElevationRange()
|
|
997
|
**/
|
|
998
|
@Transient
|
|
999
|
public Integer getAbsoluteElevation() {
|
|
1000
|
return (hasGatheringEvent() ? getGatheringEvent(true).getAbsoluteElevation() : null);
|
|
1001
|
}
|
|
1002
|
|
|
1003
|
public void setAbsoluteElevation(Integer absoluteElevation) {
|
|
1004
|
getGatheringEvent(true).setAbsoluteElevation(absoluteElevation);
|
|
1005
|
}
|
|
1006
|
|
|
1007
|
public void setAbsoluteElevationMax(Integer absoluteElevationMax) {
|
|
1008
|
getGatheringEvent(true).setAbsoluteElevationMax(absoluteElevationMax);
|
|
1009
|
}
|
|
1010
|
|
|
1011
|
public void setAbsoluteElevationText(String absoluteElevationText) {
|
|
1012
|
getGatheringEvent(true).setAbsoluteElevationText(absoluteElevationText);
|
|
1013
|
}
|
|
1014
|
|
|
1015
|
/**
|
|
1016
|
* @see #getAbsoluteElevation()
|
|
1017
|
* @see #getAbsoluteElevationError()
|
|
1018
|
* @see #setAbsoluteElevationRange(Integer, Integer)
|
|
1019
|
* @see #getAbsoluteElevationMinimum()
|
|
1020
|
*/
|
|
1021
|
@Transient
|
|
1022
|
public Integer getAbsoluteElevationMaximum() {
|
|
1023
|
if (!hasGatheringEvent()) {
|
|
1024
|
return null;
|
|
1025
|
}else{
|
|
1026
|
return getGatheringEvent(true).getAbsoluteElevationMax();
|
|
1027
|
}
|
|
1028
|
}
|
|
1029
|
|
|
1030
|
/**
|
|
1031
|
* @see #getAbsoluteElevation()
|
|
1032
|
* @see #getAbsoluteElevationError()
|
|
1033
|
* @see #setAbsoluteElevationRange(Integer, Integer)
|
|
1034
|
* @see #getAbsoluteElevationMinimum()
|
|
1035
|
*/
|
|
1036
|
@Transient
|
|
1037
|
public String getAbsoluteElevationText() {
|
|
1038
|
if (!hasGatheringEvent()) {
|
|
1039
|
return null;
|
|
1040
|
}else{
|
|
1041
|
return getGatheringEvent(true).getAbsoluteElevationText();
|
|
1042
|
}
|
|
1043
|
}
|
|
1044
|
|
|
1045
|
/**
|
|
1046
|
* Convenience method to set absolute elevation minimum and maximum.
|
|
1047
|
*
|
|
1048
|
* @see #setAbsoluteElevation(Integer)
|
|
1049
|
* @see #setAbsoluteElevationMax(Integer)
|
|
1050
|
* @param minimumElevation minimum of the range
|
|
1051
|
* @param maximumElevation maximum of the range
|
|
1052
|
*/
|
|
1053
|
public void setAbsoluteElevationRange(Integer minimumElevation, Integer maximumElevation) {
|
|
1054
|
getGatheringEvent(true).setAbsoluteElevation(minimumElevation);
|
|
1055
|
getGatheringEvent(true).setAbsoluteElevationMax(maximumElevation);
|
|
1056
|
}
|
|
1057
|
|
|
1058
|
// collector
|
|
1059
|
@Transient
|
|
1060
|
public AgentBase getCollector() {
|
|
1061
|
return (hasGatheringEvent() ? getGatheringEvent(true).getCollector()
|
|
1062
|
: null);
|
|
1063
|
}
|
|
1064
|
|
|
1065
|
public void setCollector(AgentBase collector) {
|
|
1066
|
getGatheringEvent(true).setCollector(collector);
|
|
1067
|
}
|
|
1068
|
|
|
1069
|
// collecting method
|
|
1070
|
@Transient
|
|
1071
|
public String getCollectingMethod() {
|
|
1072
|
return (hasGatheringEvent() ? getGatheringEvent(true).getCollectingMethod() : null);
|
|
1073
|
}
|
|
1074
|
|
|
1075
|
public void setCollectingMethod(String collectingMethod) {
|
|
1076
|
getGatheringEvent(true).setCollectingMethod(collectingMethod);
|
|
1077
|
}
|
|
1078
|
|
|
1079
|
// distance to ground
|
|
1080
|
|
|
1081
|
/**
|
|
1082
|
* Returns the correctly formatted <code>distance to ground</code> information.
|
|
1083
|
* If distanceToGroundText is not blank, it will be returned,
|
|
1084
|
* otherwise distanceToGround will be returned, followed by distanceToGroundMax
|
|
1085
|
* if existing, separated by " - "
|
|
1086
|
* @return
|
|
1087
|
*/
|
|
1088
|
@Transient
|
|
1089
|
public String distanceToGroundToString() {
|
|
1090
|
if (! hasGatheringEvent()){
|
|
1091
|
return null;
|
|
1092
|
}else{
|
|
1093
|
GatheringEvent ev = getGatheringEvent(true);
|
|
1094
|
String text = ev.getDistanceToGroundText();
|
|
1095
|
Double min = getDistanceToGround();
|
|
1096
|
Double max = getDistanceToGroundMax();
|
|
1097
|
return distanceString(min, max, text, METER);
|
|
1098
|
}
|
|
1099
|
}
|
|
1100
|
|
|
1101
|
@Transient
|
|
1102
|
public Double getDistanceToGround() {
|
|
1103
|
return (hasGatheringEvent() ? getGatheringEvent(true).getDistanceToGround() : null);
|
|
1104
|
}
|
|
1105
|
|
|
1106
|
public void setDistanceToGround(Double distanceToGround) {
|
|
1107
|
getGatheringEvent(true).setDistanceToGround(distanceToGround);
|
|
1108
|
}
|
|
1109
|
|
|
1110
|
/**
|
|
1111
|
* @see #getDistanceToGround()
|
|
1112
|
* @see #getDistanceToGroundRange(Integer, Integer)
|
|
1113
|
*/
|
|
1114
|
@Transient
|
|
1115
|
public Double getDistanceToGroundMax() {
|
|
1116
|
if (!hasGatheringEvent()) {
|
|
1117
|
return null;
|
|
1118
|
}else{
|
|
1119
|
return getGatheringEvent(true).getDistanceToGroundMax();
|
|
1120
|
}
|
|
1121
|
}
|
|
1122
|
|
|
1123
|
public void setDistanceToGroundMax(Double distanceToGroundMax) {
|
|
1124
|
getGatheringEvent(true).setDistanceToGroundMax(distanceToGroundMax);
|
|
1125
|
}
|
|
1126
|
|
|
1127
|
/**
|
|
1128
|
* @see #getDistanceToGround()
|
|
1129
|
* @see #setDistanceToGroundRange(Integer, Integer)
|
|
1130
|
*/
|
|
1131
|
@Transient
|
|
1132
|
public String getDistanceToGroundText() {
|
|
1133
|
if (!hasGatheringEvent()) {
|
|
1134
|
return null;
|
|
1135
|
}else{
|
|
1136
|
return getGatheringEvent(true).getDistanceToGroundText();
|
|
1137
|
}
|
|
1138
|
}
|
|
1139
|
public void setDistanceToGroundText(String distanceToGroundText) {
|
|
1140
|
getGatheringEvent(true).setDistanceToGroundText(distanceToGroundText);
|
|
1141
|
}
|
|
1142
|
|
|
1143
|
/**
|
|
1144
|
* Convenience method to set distance to ground minimum and maximum.
|
|
1145
|
*
|
|
1146
|
* @see #getDistanceToGround()
|
|
1147
|
* @see #getDistanceToGroundMax()
|
|
1148
|
* @param minimumDistance minimum of the range
|
|
1149
|
* @param maximumDistance maximum of the range
|
|
1150
|
*/
|
|
1151
|
public void setDistanceToGroundRange(Double minimumDistance, Double maximumDistance) throws IllegalArgumentException{
|
|
1152
|
getGatheringEvent(true).setDistanceToGround(minimumDistance);
|
|
1153
|
getGatheringEvent(true).setDistanceToGroundMax(maximumDistance);
|
|
1154
|
}
|
|
1155
|
|
|
1156
|
|
|
1157
|
/**
|
|
1158
|
* Returns the correctly formatted <code>distance to water surface</code> information.
|
|
1159
|
* If distanceToWaterSurfaceText is not blank, it will be returned,
|
|
1160
|
* otherwise distanceToWaterSurface will be returned, followed by distanceToWatersurfaceMax
|
|
1161
|
* if existing, separated by " - "
|
|
1162
|
* @return
|
|
1163
|
*/
|
|
1164
|
@Transient
|
|
1165
|
public String distanceToWaterSurfaceToString() {
|
|
1166
|
if (! hasGatheringEvent()){
|
|
1167
|
return null;
|
|
1168
|
}else{
|
|
1169
|
GatheringEvent ev = getGatheringEvent(true);
|
|
1170
|
String text = ev.getDistanceToWaterSurfaceText();
|
|
1171
|
Double min = getDistanceToWaterSurface();
|
|
1172
|
Double max = getDistanceToWaterSurfaceMax();
|
|
1173
|
return distanceString(min, max, text, METER);
|
|
1174
|
}
|
|
1175
|
}
|
|
1176
|
|
|
1177
|
// distance to water surface
|
|
1178
|
@Transient
|
|
1179
|
public Double getDistanceToWaterSurface() {
|
|
1180
|
return (hasGatheringEvent() ? getGatheringEvent(true).getDistanceToWaterSurface() : null);
|
|
1181
|
}
|
|
1182
|
|
|
1183
|
public void setDistanceToWaterSurface(Double distanceToWaterSurface) {
|
|
1184
|
getGatheringEvent(true).setDistanceToWaterSurface(distanceToWaterSurface);
|
|
1185
|
}
|
|
1186
|
|
|
1187
|
/**
|
|
1188
|
* @see #getDistanceToWaterSurface()
|
|
1189
|
* @see #getDistanceToWaterSurfaceRange(Double, Double)
|
|
1190
|
*/
|
|
1191
|
@Transient
|
|
1192
|
public Double getDistanceToWaterSurfaceMax() {
|
|
1193
|
if (!hasGatheringEvent()) {
|
|
1194
|
return null;
|
|
1195
|
}else{
|
|
1196
|
return getGatheringEvent(true).getDistanceToWaterSurfaceMax();
|
|
1197
|
}
|
|
1198
|
}
|
|
1199
|
|
|
1200
|
public void setDistanceToWaterSurfaceMax(Double distanceToWaterSurfaceMax) {
|
|
1201
|
getGatheringEvent(true).setDistanceToWaterSurfaceMax(distanceToWaterSurfaceMax);
|
|
1202
|
}
|
|
1203
|
|
|
1204
|
/**
|
|
1205
|
* @see #getDistanceToWaterSurface()
|
|
1206
|
* @see #getDistanceToWaterSurfaceRange(Double, Double)
|
|
1207
|
*/
|
|
1208
|
@Transient
|
|
1209
|
public String getDistanceToWaterSurfaceText() {
|
|
1210
|
if (!hasGatheringEvent()) {
|
|
1211
|
return null;
|
|
1212
|
}else{
|
|
1213
|
return getGatheringEvent(true).getDistanceToWaterSurfaceText();
|
|
1214
|
}
|
|
1215
|
}
|
|
1216
|
public void setDistanceToWaterSurfaceText(String distanceToWaterSurfaceText) {
|
|
1217
|
getGatheringEvent(true).setDistanceToWaterSurfaceText(distanceToWaterSurfaceText);
|
|
1218
|
}
|
|
1219
|
|
|
1220
|
/**
|
|
1221
|
* Convenience method to set distance to ground minimum and maximum.
|
|
1222
|
*
|
|
1223
|
* @see #getDistanceToWaterSurface()
|
|
1224
|
* @see #getDistanceToWaterSurfaceMax()
|
|
1225
|
* @param minimumDistance minimum of the range, this is the distance which is closer to the water surface
|
|
1226
|
* @param maximumDistance maximum of the range, this is the distance which is farer to the water surface
|
|
1227
|
*/
|
|
1228
|
public void setDistanceToWaterSurfaceRange(Double minimumDistance, Double maximumDistance) throws IllegalArgumentException{
|
|
1229
|
getGatheringEvent(true).setDistanceToWaterSurface(minimumDistance);
|
|
1230
|
getGatheringEvent(true).setDistanceToWaterSurfaceMax(maximumDistance);
|
|
1231
|
}
|
|
1232
|
|
|
1233
|
|
|
1234
|
// exact location
|
|
1235
|
@Transient
|
|
1236
|
public Point getExactLocation() {
|
|
1237
|
return (hasGatheringEvent() ? getGatheringEvent(true).getExactLocation() : null);
|
|
1238
|
}
|
|
1239
|
|
|
1240
|
/**
|
|
1241
|
* Returns a sexagesimal representation of the exact location (e.g.
|
|
1242
|
* 12°59'N, 35°23E). If the exact location is <code>null</code> the empty
|
|
1243
|
* string is returned.
|
|
1244
|
*
|
|
1245
|
* @param includeEmptySeconds
|
|
1246
|
* @param includeReferenceSystem
|
|
1247
|
* @return
|
|
1248
|
*/
|
|
1249
|
public String getExactLocationText(boolean includeEmptySeconds,
|
|
1250
|
boolean includeReferenceSystem) {
|
|
1251
|
return (this.getExactLocation() == null ? "" : this.getExactLocation()
|
|
1252
|
.toSexagesimalString(includeEmptySeconds,
|
|
1253
|
includeReferenceSystem));
|
|
1254
|
}
|
|
1255
|
|
|
1256
|
public void setExactLocation(Point exactLocation) {
|
|
1257
|
getGatheringEvent(true).setExactLocation(exactLocation);
|
|
1258
|
}
|
|
1259
|
|
|
1260
|
public void setExactLocationByParsing(String longitudeToParse,
|
|
1261
|
String latitudeToParse, ReferenceSystem referenceSystem,
|
|
1262
|
Integer errorRadius) throws ParseException {
|
|
1263
|
Point point = Point.NewInstance(null, null, referenceSystem,
|
|
1264
|
errorRadius);
|
|
1265
|
point.setLongitudeByParsing(longitudeToParse);
|
|
1266
|
point.setLatitudeByParsing(latitudeToParse);
|
|
1267
|
setExactLocation(point);
|
|
1268
|
}
|
|
1269
|
|
|
1270
|
// gathering event description
|
|
1271
|
@Transient
|
|
1272
|
public String getGatheringEventDescription() {
|
|
1273
|
return (hasGatheringEvent() ? getGatheringEvent(true).getDescription()
|
|
1274
|
: null);
|
|
1275
|
}
|
|
1276
|
|
|
1277
|
public void setGatheringEventDescription(String description) {
|
|
1278
|
getGatheringEvent(true).setDescription(description);
|
|
1279
|
}
|
|
1280
|
|
|
1281
|
// gatering period
|
|
1282
|
@Transient
|
|
1283
|
public TimePeriod getGatheringPeriod() {
|
|
1284
|
return (hasGatheringEvent() ? getGatheringEvent(true).getTimeperiod()
|
|
1285
|
: null);
|
|
1286
|
}
|
|
1287
|
|
|
1288
|
public void setGatheringPeriod(TimePeriod timeperiod) {
|
|
1289
|
getGatheringEvent(true).setTimeperiod(timeperiod);
|
|
1290
|
}
|
|
1291
|
|
|
1292
|
// locality
|
|
1293
|
@Transient
|
|
1294
|
public LanguageString getLocality() {
|
|
1295
|
return (hasGatheringEvent() ? getGatheringEvent(true).getLocality()
|
|
1296
|
: null);
|
|
1297
|
}
|
|
1298
|
|
|
1299
|
/**
|
|
1300
|
* convienience method for {@link #getLocality()}.
|
|
1301
|
* {@link LanguageString#getText() getText()}
|
|
1302
|
*
|
|
1303
|
* @return
|
|
1304
|
*/
|
|
1305
|
@Transient
|
|
1306
|
public String getLocalityText() {
|
|
1307
|
LanguageString locality = getLocality();
|
|
1308
|
if (locality != null) {
|
|
1309
|
return locality.getText();
|
|
1310
|
}
|
|
1311
|
return null;
|
|
1312
|
}
|
|
1313
|
|
|
1314
|
/**
|
|
1315
|
* convienience method for {@link #getLocality()}.
|
|
1316
|
* {@link LanguageString#getLanguage() getLanguage()}
|
|
1317
|
*
|
|
1318
|
* @return
|
|
1319
|
*/
|
|
1320
|
@Transient
|
|
1321
|
public Language getLocalityLanguage() {
|
|
1322
|
LanguageString locality = getLocality();
|
|
1323
|
if (locality != null) {
|
|
1324
|
return locality.getLanguage();
|
|
1325
|
}
|
|
1326
|
return null;
|
|
1327
|
}
|
|
1328
|
|
|
1329
|
/**
|
|
1330
|
* Sets the locality string in the default language
|
|
1331
|
*
|
|
1332
|
* @param locality
|
|
1333
|
*/
|
|
1334
|
public void setLocality(String locality) {
|
|
1335
|
Language language = Language.DEFAULT();
|
|
1336
|
setLocality(locality, language);
|
|
1337
|
}
|
|
1338
|
|
|
1339
|
public void setLocality(String locality, Language language) {
|
|
1340
|
LanguageString langString = LanguageString.NewInstance(locality, language);
|
|
1341
|
setLocality(langString);
|
|
1342
|
}
|
|
1343
|
|
|
1344
|
public void setLocality(LanguageString locality) {
|
|
1345
|
getGatheringEvent(true).setLocality(locality);
|
|
1346
|
}
|
|
1347
|
|
|
1348
|
/**
|
|
1349
|
* The gathering event will be used for the field object instead of the old
|
|
1350
|
* gathering event.<BR>
|
|
1351
|
* <B>This method will override all gathering values (see below).</B>
|
|
1352
|
*
|
|
1353
|
* @see #getAbsoluteElevation()
|
|
1354
|
* @see #getAbsoluteElevationError()
|
|
1355
|
* @see #getDistanceToGround()
|
|
1356
|
* @see #getDistanceToWaterSurface()
|
|
1357
|
* @see #getExactLocation()
|
|
1358
|
* @see #getGatheringEventDescription()
|
|
1359
|
* @see #getGatheringPeriod()
|
|
1360
|
* @see #getCollectingAreas()
|
|
1361
|
* @see #getCollectingMethod()
|
|
1362
|
* @see #getLocality()
|
|
1363
|
* @see #getCollector()
|
|
1364
|
* @param gatheringEvent
|
|
1365
|
*/
|
|
1366
|
public void setGatheringEvent(GatheringEvent gatheringEvent) {
|
|
1367
|
getFieldUnit(true).setGatheringEvent(gatheringEvent);
|
|
1368
|
}
|
|
1369
|
|
|
1370
|
public boolean hasGatheringEvent() {
|
|
1371
|
return (getGatheringEvent(false) != null);
|
|
1372
|
}
|
|
1373
|
|
|
1374
|
public GatheringEvent innerGatheringEvent() {
|
|
1375
|
return getGatheringEvent(false);
|
|
1376
|
}
|
|
1377
|
|
|
1378
|
public GatheringEvent getGatheringEvent(boolean createIfNotExists) {
|
|
1379
|
if (!hasFieldUnit() && !createIfNotExists) {
|
|
1380
|
return null;
|
|
1381
|
}
|
|
1382
|
if (createIfNotExists && getFieldUnit(true).getGatheringEvent() == null) {
|
|
1383
|
GatheringEvent gatheringEvent = GatheringEvent.NewInstance();
|
|
1384
|
getFieldUnit(true).setGatheringEvent(gatheringEvent);
|
|
1385
|
}
|
|
1386
|
return getFieldUnit(true).getGatheringEvent();
|
|
1387
|
}
|
|
1388
|
|
|
1389
|
// ****************** Field Object ************************************/
|
|
1390
|
|
|
1391
|
/**
|
|
1392
|
* Returns true if a field unit exists (even if all attributes are
|
|
1393
|
* empty or <code>null<code>.
|
|
1394
|
*
|
|
1395
|
* @return
|
|
1396
|
*/
|
|
1397
|
public boolean hasFieldObject() {
|
|
1398
|
return this.fieldUnit != null;
|
|
1399
|
}
|
|
1400
|
|
|
1401
|
// ecology
|
|
1402
|
@Transient
|
|
1403
|
public String getEcology() {
|
|
1404
|
return getEcology(Language.DEFAULT());
|
|
1405
|
}
|
|
1406
|
|
|
1407
|
public String getEcology(Language language) {
|
|
1408
|
LanguageString languageString = getEcologyAll().get(language);
|
|
1409
|
return (languageString == null ? null : languageString.getText());
|
|
1410
|
}
|
|
1411
|
|
|
1412
|
// public String getEcologyPreferred(List<Language> languages){
|
|
1413
|
// LanguageString languageString =
|
|
1414
|
// getEcologyAll().getPreferredLanguageString(languages);
|
|
1415
|
// return languageString.getText();
|
|
1416
|
// }
|
|
1417
|
/**
|
|
1418
|
* Returns a copy of the multilanguage text holding the ecology data.
|
|
1419
|
*
|
|
1420
|
* @see {@link TextData#getMultilanguageText()}
|
|
1421
|
* @return
|
|
1422
|
*/
|
|
1423
|
@Transient
|
|
1424
|
public Map<Language, LanguageString> getEcologyAll() {
|
|
1425
|
if (ecology == null) {
|
|
1426
|
try {
|
|
1427
|
ecology = initializeFieldObjectTextDataWithSupportTest(
|
|
1428
|
Feature.ECOLOGY(), false, false);
|
|
1429
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1430
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1431
|
}
|
|
1432
|
if (ecology == null) {
|
|
1433
|
return new HashMap<>();
|
|
1434
|
}
|
|
1435
|
}
|
|
1436
|
return ecology.getMultilanguageText();
|
|
1437
|
}
|
|
1438
|
|
|
1439
|
public void setEcology(String ecology) {
|
|
1440
|
setEcology(ecology, null);
|
|
1441
|
}
|
|
1442
|
|
|
1443
|
public void setEcology(String ecologyText, Language language) {
|
|
1444
|
if (language == null) {
|
|
1445
|
language = Language.DEFAULT();
|
|
1446
|
}
|
|
1447
|
boolean isEmpty = StringUtils.isBlank(ecologyText);
|
|
1448
|
if (ecology == null) {
|
|
1449
|
try {
|
|
1450
|
ecology = initializeFieldObjectTextDataWithSupportTest(
|
|
1451
|
Feature.ECOLOGY(), !isEmpty, false);
|
|
1452
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1453
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1454
|
}
|
|
1455
|
}
|
|
1456
|
if (ecology != null){
|
|
1457
|
if (ecologyText == null) {
|
|
1458
|
ecology.removeText(language);
|
|
1459
|
} else {
|
|
1460
|
ecology.putText(language, ecologyText);
|
|
1461
|
}
|
|
1462
|
}
|
|
1463
|
}
|
|
1464
|
|
|
1465
|
public void removeEcology(Language language) {
|
|
1466
|
setEcology(null, language);
|
|
1467
|
}
|
|
1468
|
|
|
1469
|
/**
|
|
1470
|
* Removes ecology for the default language
|
|
1471
|
*/
|
|
1472
|
public void removeEcology() {
|
|
1473
|
setEcology(null, null);
|
|
1474
|
}
|
|
1475
|
|
|
1476
|
// plant description
|
|
1477
|
@Transient
|
|
1478
|
public String getPlantDescription() {
|
|
1479
|
return getPlantDescription(null);
|
|
1480
|
}
|
|
1481
|
|
|
1482
|
public String getPlantDescription(Language language) {
|
|
1483
|
if (language == null) {
|
|
1484
|
language = Language.DEFAULT();
|
|
1485
|
}
|
|
1486
|
LanguageString languageString = getPlantDescriptionAll().get(language);
|
|
1487
|
return (languageString == null ? null : languageString.getText());
|
|
1488
|
}
|
|
1489
|
|
|
1490
|
// public String getPlantDescriptionPreferred(List<Language> languages){
|
|
1491
|
// LanguageString languageString =
|
|
1492
|
// getPlantDescriptionAll().getPreferredLanguageString(languages);
|
|
1493
|
// return languageString.getText();
|
|
1494
|
// }
|
|
1495
|
/**
|
|
1496
|
* Returns a copy of the multilanguage text holding the description data.
|
|
1497
|
*
|
|
1498
|
* @see {@link TextData#getMultilanguageText()}
|
|
1499
|
* @return
|
|
1500
|
*/
|
|
1501
|
@Transient
|
|
1502
|
public Map<Language, LanguageString> getPlantDescriptionAll() {
|
|
1503
|
if (plantDescription == null) {
|
|
1504
|
try {
|
|
1505
|
plantDescription = initializeFieldObjectTextDataWithSupportTest(
|
|
1506
|
Feature.DESCRIPTION(), false, false);
|
|
1507
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1508
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1509
|
}
|
|
1510
|
if (plantDescription == null) {
|
|
1511
|
return new HashMap<>();
|
|
1512
|
}
|
|
1513
|
}
|
|
1514
|
return plantDescription.getMultilanguageText();
|
|
1515
|
}
|
|
1516
|
|
|
1517
|
public void setPlantDescription(String plantDescription) {
|
|
1518
|
setPlantDescription(plantDescription, null);
|
|
1519
|
}
|
|
1520
|
|
|
1521
|
public void setPlantDescription(String plantDescriptionText, Language language) {
|
|
1522
|
if (language == null) {
|
|
1523
|
language = Language.DEFAULT();
|
|
1524
|
}
|
|
1525
|
boolean isEmpty = StringUtils.isBlank(plantDescriptionText);
|
|
1526
|
if (plantDescription == null) {
|
|
1527
|
try {
|
|
1528
|
plantDescription = initializeFieldObjectTextDataWithSupportTest(
|
|
1529
|
Feature.DESCRIPTION(), !isEmpty, false);
|
|
1530
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1531
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1532
|
}
|
|
1533
|
}
|
|
1534
|
if (plantDescription != null){
|
|
1535
|
if (plantDescriptionText == null) {
|
|
1536
|
plantDescription.removeText(language);
|
|
1537
|
} else {
|
|
1538
|
plantDescription.putText(language, plantDescriptionText);
|
|
1539
|
}
|
|
1540
|
}
|
|
1541
|
}
|
|
1542
|
|
|
1543
|
public void removePlantDescription(Language language) {
|
|
1544
|
setPlantDescription(null, language);
|
|
1545
|
}
|
|
1546
|
|
|
1547
|
// life-form
|
|
1548
|
@Transient
|
|
1549
|
public String getLifeform() {
|
|
1550
|
return getLifeform(Language.DEFAULT());
|
|
1551
|
}
|
|
1552
|
|
|
1553
|
public String getLifeform(Language language) {
|
|
1554
|
LanguageString languageString = getLifeformAll().get(language);
|
|
1555
|
return (languageString == null ? null : languageString.getText());
|
|
1556
|
}
|
|
1557
|
|
|
1558
|
// public String getLifeformPreferred(List<Language> languages){
|
|
1559
|
// LanguageString languageString =
|
|
1560
|
// getLifeformAll().getPreferredLanguageString(languages);
|
|
1561
|
// return languageString.getText();
|
|
1562
|
// }
|
|
1563
|
/**
|
|
1564
|
* Returns a copy of the multi language text holding the life-form data.
|
|
1565
|
*
|
|
1566
|
* @see {@link TextData#getMultilanguageText()}
|
|
1567
|
* @return
|
|
1568
|
*/
|
|
1569
|
@Transient
|
|
1570
|
public Map<Language, LanguageString> getLifeformAll() {
|
|
1571
|
if (lifeform == null) {
|
|
1572
|
try {
|
|
1573
|
lifeform = initializeFieldObjectTextDataWithSupportTest(
|
|
1574
|
Feature.LIFEFORM(), false, false);
|
|
1575
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1576
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1577
|
}
|
|
1578
|
if (lifeform == null) {
|
|
1579
|
return new HashMap<>();
|
|
1580
|
}
|
|
1581
|
}
|
|
1582
|
return lifeform.getMultilanguageText();
|
|
1583
|
}
|
|
1584
|
|
|
1585
|
public void setLifeform(String lifeform) {
|
|
1586
|
setLifeform(lifeform, null);
|
|
1587
|
}
|
|
1588
|
|
|
1589
|
public void setLifeform(String lifeformText, Language language) {
|
|
1590
|
if (language == null) {
|
|
1591
|
language = Language.DEFAULT();
|
|
1592
|
}
|
|
1593
|
boolean isEmpty = StringUtils.isBlank(lifeformText);
|
|
1594
|
if (lifeform == null) {
|
|
1595
|
try {
|
|
1596
|
lifeform = initializeFieldObjectTextDataWithSupportTest(
|
|
1597
|
Feature.LIFEFORM(), !isEmpty, false);
|
|
1598
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1599
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1600
|
}
|
|
1601
|
}
|
|
1602
|
if (lifeform != null){
|
|
1603
|
if (lifeformText == null) {
|
|
1604
|
lifeform.removeText(language);
|
|
1605
|
} else {
|
|
1606
|
lifeform.putText(language, lifeformText);
|
|
1607
|
}
|
|
1608
|
}
|
|
1609
|
}
|
|
1610
|
|
|
1611
|
public void removeLifeform(Language language) {
|
|
1612
|
setLifeform(null, language);
|
|
1613
|
}
|
|
1614
|
|
|
1615
|
/**
|
|
1616
|
* Removes life-form for the default language
|
|
1617
|
*/
|
|
1618
|
public void removeLifeform() {
|
|
1619
|
setLifeform(null, null);
|
|
1620
|
}
|
|
1621
|
|
|
1622
|
// field object definition
|
|
1623
|
public void addFieldObjectDefinition(String text, Language language) {
|
|
1624
|
getFieldUnit(true).putDefinition(language, text);
|
|
1625
|
}
|
|
1626
|
|
|
1627
|
@Transient
|
|
1628
|
public Map<Language, LanguageString> getFieldObjectDefinition() {
|
|
1629
|
if (!hasFieldUnit()) {
|
|
1630
|
return new HashMap<>();
|
|
1631
|
} else {
|
|
1632
|
return getFieldUnit(true).getDefinition();
|
|
1633
|
}
|
|
1634
|
}
|
|
1635
|
|
|
1636
|
public String getFieldObjectDefinition(Language language) {
|
|
1637
|
Map<Language, LanguageString> map = getFieldObjectDefinition();
|
|
1638
|
LanguageString languageString = (map == null ? null : map.get(language));
|
|
1639
|
if (languageString != null) {
|
|
1640
|
return languageString.getText();
|
|
1641
|
} else {
|
|
1642
|
return null;
|
|
1643
|
}
|
|
1644
|
}
|
|
1645
|
|
|
1646
|
public void removeFieldObjectDefinition(Language lang) {
|
|
1647
|
if (hasFieldUnit()) {
|
|
1648
|
getFieldUnit(true).removeDefinition(lang);
|
|
1649
|
}
|
|
1650
|
}
|
|
1651
|
|
|
1652
|
// media
|
|
1653
|
public boolean addFieldObjectMedia(Media media) {
|
|
1654
|
try {
|
|
1655
|
return addMedia(media, getFieldUnit(true));
|
|
1656
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1657
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1658
|
}
|
|
1659
|
}
|
|
1660
|
|
|
1661
|
/**
|
|
1662
|
* Returns true, if an image gallery for the field object exists.<BR>
|
|
1663
|
* Returns also <code>true</code> if the image gallery is empty.
|
|
1664
|
*
|
|
1665
|
* @return
|
|
1666
|
*/
|
|
1667
|
public boolean hasFieldObjectImageGallery() {
|
|
1668
|
if (!hasFieldObject()) {
|
|
1669
|
return false;
|
|
1670
|
} else {
|
|
1671
|
return (getImageGallery(fieldUnit, false) != null);
|
|
1672
|
}
|
|
1673
|
}
|
|
1674
|
|
|
1675
|
public void setFieldObjectImageGallery(SpecimenDescription imageGallery)
|
|
1676
|
throws DerivedUnitFacadeNotSupportedException {
|
|
1677
|
SpecimenDescription existingGallery = getFieldObjectImageGallery(false);
|
|
1678
|
|
|
1679
|
// test attached specimens contain this.derivedUnit
|
|
1680
|
SpecimenOrObservationBase<?> facadeFieldUnit = innerFieldUnit();
|
|
1681
|
testSpecimenInImageGallery(imageGallery, facadeFieldUnit);
|
|
1682
|
|
|
1683
|
if (existingGallery != null) {
|
|
1684
|
if (existingGallery != imageGallery) {
|
|
1685
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
1686
|
"DerivedUnitFacade does not allow more than one image gallery");
|
|
1687
|
} else {
|
|
1688
|
// do nothing
|
|
1689
|
}
|
|
1690
|
} else {
|
|
1691
|
TextData textData = testImageGallery(imageGallery);
|
|
1692
|
this.fieldObjectMediaTextData = textData;
|
|
1693
|
}
|
|
1694
|
}
|
|
1695
|
|
|
1696
|
/**
|
|
1697
|
* Returns the field object image gallery. If no such image gallery exists
|
|
1698
|
* and createIfNotExists is true an new one is created. Otherwise null is
|
|
1699
|
* returned.
|
|
1700
|
*
|
|
1701
|
* @param createIfNotExists
|
|
1702
|
* @return
|
|
1703
|
*/
|
|
1704
|
public SpecimenDescription getFieldObjectImageGallery(
|
|
1705
|
boolean createIfNotExists) {
|
|
1706
|
TextData textData;
|
|
1707
|
try {
|
|
1708
|
textData = initializeFieldObjectTextDataWithSupportTest(
|
|
1709
|
Feature.IMAGE(), createIfNotExists, true);
|
|
1710
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1711
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1712
|
}
|
|
1713
|
if (textData != null) {
|
|
1714
|
return CdmBase.deproxy(textData.getInDescription(),
|
|
1715
|
SpecimenDescription.class);
|
|
1716
|
} else {
|
|
1717
|
return null;
|
|
1718
|
}
|
|
1719
|
}
|
|
1720
|
|
|
1721
|
/**
|
|
1722
|
* Returns the media for the field object.<BR>
|
|
1723
|
*
|
|
1724
|
* @return
|
|
1725
|
*/
|
|
1726
|
@Transient
|
|
1727
|
public List<Media> getFieldObjectMedia() {
|
|
1728
|
try {
|
|
1729
|
List<Media> result = getMediaList(getFieldUnit(false), false);
|
|
1730
|
return result == null ? new ArrayList<Media>() : result;
|
|
1731
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1732
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1733
|
}
|
|
1734
|
}
|
|
1735
|
|
|
1736
|
public boolean removeFieldObjectMedia(Media media) {
|
|
1737
|
try {
|
|
1738
|
return removeMedia(media, getFieldUnit(false));
|
|
1739
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
1740
|
throw new IllegalStateException(notSupportMessage, e);
|
|
1741
|
}
|
|
1742
|
}
|
|
1743
|
|
|
1744
|
// field number
|
|
1745
|
@Transient
|
|
1746
|
public String getFieldNumber() {
|
|
1747
|
if (!hasFieldUnit()) {
|
|
1748
|
return null;
|
|
1749
|
} else {
|
|
1750
|
return getFieldUnit(true).getFieldNumber();
|
|
1751
|
}
|
|
1752
|
}
|
|
1753
|
|
|
1754
|
public void setFieldNumber(String fieldNumber) {
|
|
1755
|
getFieldUnit(true).setFieldNumber(fieldNumber);
|
|
1756
|
}
|
|
1757
|
|
|
1758
|
// primary collector
|
|
1759
|
@Transient
|
|
1760
|
public Person getPrimaryCollector() {
|
|
1761
|
if (!hasFieldUnit()) {
|
|
1762
|
return null;
|
|
1763
|
} else {
|
|
1764
|
return getFieldUnit(true).getPrimaryCollector();
|
|
1765
|
}
|
|
1766
|
}
|
|
1767
|
|
|
1768
|
public void setPrimaryCollector(Person primaryCollector) {
|
|
1769
|
getFieldUnit(true).setPrimaryCollector(primaryCollector);
|
|
1770
|
}
|
|
1771
|
|
|
1772
|
// field notes
|
|
1773
|
@Transient
|
|
1774
|
public String getFieldNotes() {
|
|
1775
|
if (!hasFieldUnit()) {
|
|
1776
|
return null;
|
|
1777
|
} else {
|
|
1778
|
return getFieldUnit(true).getFieldNotes();
|
|
1779
|
}
|
|
1780
|
}
|
|
1781
|
|
|
1782
|
public void setFieldNotes(String fieldNotes) {
|
|
1783
|
getFieldUnit(true).setFieldNotes(fieldNotes);
|
|
1784
|
}
|
|
1785
|
|
|
1786
|
// individual counts
|
|
1787
|
@Transient
|
|
1788
|
public Integer getIndividualCount() {
|
|
1789
|
return (hasFieldUnit() ? getFieldUnit(true).getIndividualCount() : null);
|
|
1790
|
}
|
|
1791
|
|
|
1792
|
public void setIndividualCount(Integer individualCount) {
|
|
1793
|
getFieldUnit(true).setIndividualCount(individualCount);
|
|
1794
|
}
|
|
1795
|
|
|
1796
|
// life stage
|
|
1797
|
@Transient
|
|
1798
|
public DefinedTerm getLifeStage() {
|
|
1799
|
return (hasFieldUnit() ? getFieldUnit(true).getLifeStage() : null);
|
|
1800
|
}
|
|
1801
|
|
|
1802
|
public void setLifeStage(DefinedTerm lifeStage) {
|
|
1803
|
FieldUnit fieldUnit = getFieldUnit(lifeStage != null);
|
|
1804
|
if (fieldUnit != null){
|
|
1805
|
fieldUnit.setLifeStage(lifeStage);
|
|
1806
|
}
|
|
1807
|
}
|
|
1808
|
|
|
1809
|
// sex
|
|
1810
|
@Transient
|
|
1811
|
public DefinedTerm getSex() {
|
|
1812
|
return (hasFieldUnit() ? getFieldUnit(true).getSex(): null);
|
|
1813
|
}
|
|
1814
|
|
|
1815
|
public void setSex(DefinedTerm sex) {
|
|
1816
|
FieldUnit fieldUnit = getFieldUnit(sex != null);
|
|
1817
|
if (fieldUnit != null){
|
|
1818
|
fieldUnit.setSex(sex);
|
|
1819
|
}
|
|
1820
|
}
|
|
1821
|
|
|
1822
|
// kind of Unit
|
|
1823
|
@Transient
|
|
1824
|
public DefinedTerm getKindOfUnit() {
|
|
1825
|
return (hasFieldUnit() ? getFieldUnit(true).getKindOfUnit() : null);
|
|
1826
|
}
|
|
1827
|
//
|
|
1828
|
// @Transient
|
|
1829
|
// public DefinedTerm getDerivedUnitKindOfUnit() {
|
|
1830
|
// checkDerivedUnit();
|
|
1831
|
// return checkDerivedUnit() ? derivedUnit.getKindOfUnit() : null;
|
|
1832
|
// }
|
|
1833
|
|
|
1834
|
|
|
1835
|
/**
|
|
1836
|
* Sets the kind-of-unit
|
|
1837
|
* @param kindOfUnit
|
|
1838
|
*/
|
|
1839
|
public void setKindOfUnit(DefinedTerm kindOfUnit) {
|
|
1840
|
FieldUnit fieldUnit = getFieldUnit(kindOfUnit != null);
|
|
1841
|
if (fieldUnit != null){
|
|
1842
|
fieldUnit.setKindOfUnit(kindOfUnit);
|
|
1843
|
}
|
|
1844
|
}
|
|
1845
|
|
|
1846
|
// public void setDerivedUnitKindOfUnit(DefinedTerm kindOfUnit) {
|
|
1847
|
// testDerivedUnit();
|
|
1848
|
//
|
|
1849
|
// baseUnit().setKindOfUnit(kindOfUnit);
|
|
1850
|
// }
|
|
1851
|
|
|
1852
|
|
|
1853
|
// field unit
|
|
1854
|
public boolean hasFieldUnit() {
|
|
1855
|
return (getFieldUnit(CREATE_NOT) != null);
|
|
1856
|
}
|
|
1857
|
|
|
1858
|
/**
|
|
1859
|
* Returns the field unit as an object.
|
|
1860
|
*
|
|
1861
|
* @return
|
|
1862
|
*/
|
|
1863
|
public FieldUnit innerFieldUnit() {
|
|
1864
|
return getFieldUnit(CREATE_NOT);
|
|
1865
|
}
|
|
1866
|
|
|
1867
|
/**
|
|
1868
|
* Returns the field unit as an object.
|
|
1869
|
*
|
|
1870
|
* @return
|
|
1871
|
*/
|
|
1872
|
public FieldUnit getFieldUnit(boolean createIfNotExists) {
|
|
1873
|
if (fieldUnit == null && createIfNotExists) {
|
|
1874
|
setFieldUnit(FieldUnit.NewInstance());
|
|
1875
|
}
|
|
1876
|
return this.fieldUnit;
|
|
1877
|
}
|
|
1878
|
|
|
1879
|
|
|
1880
|
public void setFieldUnit(FieldUnit fieldUnit) {
|
|
1881
|
this.fieldUnit = fieldUnit;
|
|
1882
|
if (fieldUnit != null){
|
|
1883
|
if (config.isFirePropertyChangeEvents()){
|
|
1884
|
addNewEventPropagationListener(fieldUnit);
|
|
1885
|
}
|
|
1886
|
if (derivedUnit != null){
|
|
1887
|
DerivationEvent derivationEvent = getDerivationEvent(CREATE);
|
|
1888
|
derivationEvent.addOriginal(fieldUnit);
|
|
1889
|
}
|
|
1890
|
setFieldUnitCacheStrategy();
|
|
1891
|
}
|
|
1892
|
}
|
|
1893
|
|
|
1894
|
// ****************** Specimen *******************************************
|
|
1895
|
|
|
1896
|
|
|
1897
|
// Definition
|
|
1898
|
public void addDerivedUnitDefinition(String text, Language language) {
|
|
1899
|
innerDerivedUnit().putDefinition(language, text);
|
|
1900
|
}
|
|
1901
|
|
|
1902
|
@Transient
|
|
1903
|
public Map<Language, LanguageString> getDerivedUnitDefinitions() {
|
|
1904
|
return ! checkDerivedUnit()? null : this.derivedUnit.getDefinition();
|
|
1905
|
}
|
|
1906
|
|
|
1907
|
|
|
1908
|
public String getDerivedUnitDefinition(Language language) {
|
|
1909
|
if (! checkDerivedUnit()){
|
|
1910
|
return null;
|
|
1911
|
}
|
|
1912
|
Map<Language, LanguageString> languageMap = derivedUnit.getDefinition();
|
|
1913
|
LanguageString languageString = languageMap.get(language);
|
|
1914
|
if (languageString != null) {
|
|
1915
|
return languageString.getText();
|
|
1916
|
} else {
|
|
1917
|
return null;
|
|
1918
|
}
|
|
1919
|
}
|
|
1920
|
|
|
1921
|
public void removeDerivedUnitDefinition(Language lang) {
|
|
1922
|
testDerivedUnit();
|
|
1923
|
derivedUnit.removeDefinition(lang);
|
|
1924
|
}
|
|
1925
|
|
|
1926
|
// Determination
|
|
1927
|
public void addDetermination(DeterminationEvent determination) {
|
|
1928
|
//TODO implement correct bidirectional mapping in model classes
|
|
1929
|
determination.setIdentifiedUnit(baseUnit());
|
|
1930
|
baseUnit().addDetermination(determination);
|
|
1931
|
}
|
|
1932
|
|
|
1933
|
@Transient
|
|
1934
|
public DeterminationEvent getPreferredDetermination() {
|
|
1935
|
Set<DeterminationEvent> events = baseUnit().getDeterminations();
|
|
1936
|
for (DeterminationEvent event : events){
|
|
1937
|
if (event.getPreferredFlag() == true){
|
|
1938
|
return event;
|
|
1939
|
}
|
|
1940
|
}
|
|
1941
|
return null;
|
|
1942
|
}
|
|
1943
|
|
|
1944
|
/**
|
|
1945
|
* This method returns the preferred determination.
|
|
1946
|
* @see #getOtherDeterminations()
|
|
1947
|
* @see #getDeterminations()
|
|
1948
|
* @return
|
|
1949
|
*/
|
|
1950
|
@Transient
|
|
1951
|
public void setPreferredDetermination(DeterminationEvent newEvent) {
|
|
1952
|
Set<DeterminationEvent> events = baseUnit().getDeterminations();
|
|
1953
|
for (DeterminationEvent event : events){
|
|
1954
|
if (event.getPreferredFlag() == true){
|
|
1955
|
event.setPreferredFlag(false);
|
|
1956
|
}
|
|
1957
|
}
|
|
1958
|
newEvent.setPreferredFlag(true);
|
|
1959
|
events.add(newEvent);
|
|
1960
|
}
|
|
1961
|
|
|
1962
|
/**
|
|
1963
|
* This method returns all determinations except for the preferred one.
|
|
1964
|
* @see #getPreferredDetermination()
|
|
1965
|
* @see #getDeterminations()
|
|
1966
|
* @return
|
|
1967
|
*/
|
|
1968
|
@Transient
|
|
1969
|
public Set<DeterminationEvent> getOtherDeterminations() {
|
|
1970
|
Set<DeterminationEvent> events = baseUnit().getDeterminations();
|
|
1971
|
Set<DeterminationEvent> result = new HashSet<>();
|
|
1972
|
for (DeterminationEvent event : events){
|
|
1973
|
if (event.getPreferredFlag() != true){
|
|
1974
|
result.add(event);
|
|
1975
|
}
|
|
1976
|
}
|
|
1977
|
return result;
|
|
1978
|
}
|
|
1979
|
|
|
1980
|
/**
|
|
1981
|
* This method returns all determination events. The preferred one {@link #getPreferredDetermination()}
|
|
1982
|
* and all others {@link #getOtherDeterminations()}.
|
|
1983
|
* @return
|
|
1984
|
*/
|
|
1985
|
@Transient
|
|
1986
|
public Set<DeterminationEvent> getDeterminations() {
|
|
1987
|
return baseUnit().getDeterminations();
|
|
1988
|
}
|
|
1989
|
|
|
1990
|
public void removeDetermination(DeterminationEvent determination) {
|
|
1991
|
baseUnit().removeDetermination(determination);
|
|
1992
|
}
|
|
1993
|
|
|
1994
|
// Media
|
|
1995
|
public boolean addDerivedUnitMedia(Media media) {
|
|
1996
|
testDerivedUnit();
|
|
1997
|
try {
|
|
1998
|
return addMedia(media, derivedUnit);
|
|
1999
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
2000
|
throw new IllegalStateException(notSupportMessage, e);
|
|
2001
|
}
|
|
2002
|
}
|
|
2003
|
|
|
2004
|
/**
|
|
2005
|
* Returns true, if an image gallery exists for the specimen.<BR>
|
|
2006
|
* Returns also <code>true</code> if the image gallery is empty.
|
|
2007
|
*/
|
|
2008
|
public boolean hasDerivedUnitImageGallery() {
|
|
2009
|
return (getImageGallery(derivedUnit, false) != null);
|
|
2010
|
}
|
|
2011
|
|
|
2012
|
public SpecimenDescription getDerivedUnitImageGallery(boolean createIfNotExists) {
|
|
2013
|
if (!checkDerivedUnit()){
|
|
2014
|
return null;
|
|
2015
|
}
|
|
2016
|
TextData textData;
|
|
2017
|
try {
|
|
2018
|
textData = inititializeTextDataWithSupportTest(Feature.IMAGE(),
|
|
2019
|
derivedUnit, createIfNotExists, true);
|
|
2020
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
2021
|
throw new IllegalStateException(notSupportMessage, e);
|
|
2022
|
}
|
|
2023
|
if (textData != null) {
|
|
2024
|
return CdmBase.deproxy(textData.getInDescription(),
|
|
2025
|
SpecimenDescription.class);
|
|
2026
|
} else {
|
|
2027
|
return null;
|
|
2028
|
}
|
|
2029
|
}
|
|
2030
|
|
|
2031
|
public void setDerivedUnitImageGallery(SpecimenDescription imageGallery)
|
|
2032
|
throws DerivedUnitFacadeNotSupportedException {
|
|
2033
|
testDerivedUnit();
|
|
2034
|
SpecimenDescription existingGallery = getDerivedUnitImageGallery(false);
|
|
2035
|
|
|
2036
|
// test attached specimens contain this.derivedUnit
|
|
2037
|
SpecimenOrObservationBase facadeDerivedUnit = innerDerivedUnit();
|
|
2038
|
testSpecimenInImageGallery(imageGallery, facadeDerivedUnit);
|
|
2039
|
|
|
2040
|
if (existingGallery != null) {
|
|
2041
|
if (existingGallery != imageGallery) {
|
|
2042
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
2043
|
"DerivedUnitFacade does not allow more than one image gallery");
|
|
2044
|
} else {
|
|
2045
|
// do nothing
|
|
2046
|
}
|
|
2047
|
} else {
|
|
2048
|
TextData textData = testImageGallery(imageGallery);
|
|
2049
|
this.derivedUnitMediaTextData = textData;
|
|
2050
|
}
|
|
2051
|
}
|
|
2052
|
|
|
2053
|
/**
|
|
2054
|
* @param imageGallery
|
|
2055
|
* @throws DerivedUnitFacadeNotSupportedException
|
|
2056
|
*/
|
|
2057
|
private void testSpecimenInImageGallery(SpecimenDescription imageGallery, SpecimenOrObservationBase specimen)
|
|
2058
|
throws DerivedUnitFacadeNotSupportedException {
|
|
2059
|
SpecimenOrObservationBase imageGallerySpecimen = imageGallery.getDescribedSpecimenOrObservation();
|
|
2060
|
if (imageGallerySpecimen == null) {
|
|
2061
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
2062
|
"Image Gallery has no Specimen attached. Please attache according specimen or field unit.");
|
|
2063
|
}
|
|
2064
|
if (! imageGallerySpecimen.equals(specimen)) {
|
|
2065
|
throw new DerivedUnitFacadeNotSupportedException(
|
|
2066
|
"Image Gallery has not the facade's field object attached. Please add field object first " +
|
|
2067
|
"to image gallery specimenOrObservation list.");
|
|
2068
|
}
|
|
2069
|
}
|
|
2070
|
|
|
2071
|
/**
|
|
2072
|
* Returns the media for the specimen.<BR>
|
|
2073
|
*
|
|
2074
|
* @return
|
|
2075
|
*/
|
|
2076
|
@Transient
|
|
2077
|
public List<Media> getDerivedUnitMedia() {
|
|
2078
|
if (! checkDerivedUnit()){
|
|
2079
|
return new ArrayList<Media>();
|
|
2080
|
}
|
|
2081
|
try {
|
|
2082
|
List<Media> result = getMediaList(derivedUnit, false);
|
|
2083
|
return result == null ? new ArrayList<Media>() : result;
|
|
2084
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
2085
|
throw new IllegalStateException(notSupportMessage, e);
|
|
2086
|
}
|
|
2087
|
}
|
|
2088
|
|
|
2089
|
public boolean removeDerivedUnitMedia(Media media) {
|
|
2090
|
testDerivedUnit();
|
|
2091
|
try {
|
|
2092
|
return removeMedia(media, derivedUnit);
|
|
2093
|
} catch (DerivedUnitFacadeNotSupportedException e) {
|
|
2094
|
throw new IllegalStateException(notSupportMessage, e);
|
|
2095
|
}
|
|
2096
|
}
|
|
2097
|
|
|
2098
|
// Accession Number
|
|
2099
|
@Transient
|
|
2100
|
public String getAccessionNumber() {
|
|
2101
|
return ! checkDerivedUnit()? null : derivedUnit.getAccessionNumber();
|
|
2102
|
}
|
|
2103
|
|
|
2104
|
public void setAccessionNumber(String accessionNumber) {
|
|
2105
|
testDerivedUnit();
|
|
2106
|
derivedUnit.setAccessionNumber(accessionNumber);
|
|
2107
|
}
|
|
2108
|
|
|
2109
|
@Transient
|
|
2110
|
public String getCatalogNumber() {
|
|
2111
|
return ! checkDerivedUnit()? null : derivedUnit.getCatalogNumber();
|
|
2112
|
}
|
|
2113
|
|
|
2114
|
public void setCatalogNumber(String catalogNumber) {
|
|
2115
|
testDerivedUnit();
|
|
2116
|
derivedUnit.setCatalogNumber(catalogNumber);
|
|
2117
|
}
|
|
2118
|
|
|
2119
|
@Transient
|
|
2120
|
public String getBarcode() {
|
|
2121
|
return ! checkDerivedUnit()? null : derivedUnit.getBarcode();
|
|
2122
|
}
|
|
2123
|
|
|
2124
|
public void setBarcode(String barcode) {
|
|
2125
|
testDerivedUnit();
|
|
2126
|
derivedUnit.setBarcode(barcode);
|
|
2127
|
}
|
|
2128
|
|
|
2129
|
// Preservation Method
|
|
2130
|
|
|
2131
|
/**
|
|
2132
|
* Only supported by specimen and fossils
|
|
2133
|
*
|
|
2134
|
* @see #DerivedUnitType
|
|
2135
|
* @return
|
|
2136
|
*/
|
|
2137
|
@Transient
|
|
2138
|
public PreservationMethod getPreservationMethod() throws MethodNotSupportedByDerivedUnitTypeException {
|
|
2139
|
if (derivedUnit!=null && derivedUnit.getRecordBasis().isPreservedSpecimen()) {
|
|
2140
|
return CdmBase.deproxy(derivedUnit, DerivedUnit.class).getPreservation();
|
|
2141
|
} else {
|
|
2142
|
if (this.config.isThrowExceptionForNonSpecimenPreservationMethodRequest()) {
|
|
2143
|
throw new MethodNotSupportedByDerivedUnitTypeException(
|
|
2144
|
"A preservation method is only available in derived units of type 'Preserved Specimen' or one of its specializations like 'Fossil Specimen' ");
|
|
2145
|
} else {
|
|
2146
|
return null;
|
|
2147
|
}
|
|
2148
|
}
|
|
2149
|
}
|
|
2150
|
|
|
2151
|
/**
|
|
2152
|
* Only supported by specimen and fossils
|
|
2153
|
*
|
|
2154
|
* @see #DerivedUnitType
|
|
2155
|
* @return
|
|
2156
|
*/
|
|
2157
|
public void setPreservationMethod(PreservationMethod preservation)
|
|
2158
|
throws MethodNotSupportedByDerivedUnitTypeException {
|
|
2159
|
if (derivedUnit!=null && derivedUnit.getRecordBasis().isPreservedSpecimen()) {
|
|
2160
|
CdmBase.deproxy(derivedUnit, DerivedUnit.class).setPreservation(preservation);
|
|
2161
|
} else {
|
|
2162
|
if (this.config.isThrowExceptionForNonSpecimenPreservationMethodRequest()) {
|
|
2163
|
throw new MethodNotSupportedByDerivedUnitTypeException(
|
|
2164
|
"A preservation method is only available in derived units of type 'Specimen' or 'Fossil'");
|
|
2165
|
} else {
|
|
2166
|
return;
|
|
2167
|
}
|
|
2168
|
}
|
|
2169
|
}
|
|
2170
|
|
|
2171
|
//preferred stable URI #5606
|
|
2172
|
@Transient
|
|
2173
|
public URI getPreferredStableUri(){
|
|
2174
|
return baseUnit().getPreferredStableUri();
|
|
2175
|
}
|
|
2176
|
public void setPreferredStableUri(URI stableUri){
|
|
2177
|
baseUnit().setPreferredStableUri(stableUri);
|
|
2178
|
}
|
|
2179
|
|
|
2180
|
|
|
2181
|
// Stored under name
|
|
2182
|
@Transient
|
|
2183
|
public TaxonName getStoredUnder() {
|
|
2184
|
return ! checkDerivedUnit()? null : derivedUnit.getStoredUnder();
|
|
2185
|
}
|
|
2186
|
|
|
2187
|
public void setStoredUnder(TaxonName storedUnder) {
|
|
2188
|
testDerivedUnit();
|
|
2189
|
derivedUnit.setStoredUnder(storedUnder);
|
|
2190
|
}
|
|
2191
|
|
|
2192
|
// title cache
|
|
2193
|
public String getTitleCache() {
|
|
2194
|
SpecimenOrObservationBase<?> titledUnit = baseUnit();
|
|
2195
|
|
|
2196
|
if (!titledUnit.isProtectedTitleCache()) {
|
|
2197
|
// always compute title cache anew as long as there are no property
|
|
2198
|
// change listeners on
|
|
2199
|
// field unit, gathering event etc
|
|
2200
|
titledUnit.setTitleCache(null, false);
|
|
2201
|
}
|
|
2202
|
return titledUnit.getTitleCache();
|
|
2203
|
}
|
|
2204
|
|
|
2205
|
public boolean isProtectedTitleCache() {
|
|
2206
|
return baseUnit().isProtectedTitleCache();
|
|
2207
|
}
|
|
2208
|
|
|
2209
|
public void setTitleCache(String titleCache, boolean isProtected) {
|
|
2210
|
this.baseUnit().setTitleCache(titleCache, isProtected);
|
|
2211
|
}
|
|
2212
|
|
|
2213
|
/**
|
|
2214
|
* Returns the derived unit itself.
|
|
2215
|
*
|
|
2216
|
* @return the derived unit
|
|
2217
|
*/
|
|
2218
|
public DerivedUnit innerDerivedUnit() {
|
|
2219
|
return this.derivedUnit;
|
|
2220
|
}
|
|
2221
|
|
|
2222
|
// /**
|
|
2223
|
// * Returns the derived unit itself.
|
|
2224
|
// *
|
|
2225
|
// * @return the derived unit
|
|
2226
|
// */
|
|
2227
|
// public DerivedUnit innerDerivedUnit(boolean createIfNotExists) {
|
|
2228
|
// DerivedUnit result = this.derivedUnit;
|
|
2229
|
// if (result == null && createIfNotExists){
|
|
2230
|
// if (this.fieldUnit == null){
|
|
2231
|
// String message = "Field unit must exist to create derived unit.";
|
|
2232
|
// throw new IllegalStateException(message);
|
|
2233
|
// }else{
|
|
2234
|
// DerivedUnit =
|
|
2235
|
// DerivationEvent derivationEvent = getDerivationEvent(true);
|
|
2236
|
// derivationEvent.addOriginal(fieldUnit);
|
|
2237
|
// return this.derivedUnit;
|
|
2238
|
// }
|
|
2239
|
// }
|
|
2240
|
// }
|
|
2241
|
|
|
2242
|
private boolean hasDerivationEvent() {
|
|
2243
|
return getDerivationEvent() == null ? false : true;
|
|
2244
|
}
|
|
2245
|
|
|
2246
|
private DerivationEvent getDerivationEvent() {
|
|
2247
|
return getDerivationEvent(CREATE_NOT);
|
|
2248
|
}
|
|
2249
|
|
|
2250
|
/**
|
|
2251
|
* Returns the derivation event. If no derivation event exists and <code>createIfNotExists</code>
|
|
2252
|
* is <code>true</code> a new derivation event is created and returned.
|
|
2253
|
* Otherwise <code>null</code> is returned.
|
|
2254
|
* @param createIfNotExists
|
|
2255
|
*/
|
|
2256
|
private DerivationEvent getDerivationEvent(boolean createIfNotExists) {
|
|
2257
|
DerivationEvent result = null;
|
|
2258
|
if (derivedUnit != null){
|
|
2259
|
result = derivedUnit.getDerivedFrom();
|
|
2260
|
}else{
|
|
2261
|
return null;
|
|
2262
|
}
|
|
2263
|
if (result == null && createIfNotExists) {
|
|
2264
|
DerivationEventType type = null;
|
|
2265
|
if (isAccessioned(derivedUnit)){
|
|
2266
|
type = DerivationEventType.ACCESSIONING();
|
|
2267
|
}
|
|
2268
|
|
|
2269
|
result = DerivationEvent.NewInstance(type);
|
|
2270
|
derivedUnit.setDerivedFrom(result);
|
|
2271
|
}
|
|
2272
|
return result;
|
|
2273
|
}
|
|
2274
|
|
|
2275
|
/**
|
|
2276
|
* TODO still unclear which classes do definetly require accessioning.
|
|
2277
|
* Only return true for those classes which are clear.
|
|
2278
|
* @param derivedUnit
|
|
2279
|
* @return
|
|
2280
|
*/
|
|
2281
|
private boolean isAccessioned(DerivedUnit derivedUnit) {
|
|
2282
|
if (derivedUnit.getRecordBasis().equals(SpecimenOrObservationType.PreservedSpecimen) ){
|
|
2283
|
return true; //maybe also subtypes should be true
|
|
2284
|
}else{
|
|
2285
|
return false;
|
|
2286
|
}
|
|
2287
|
}
|
|
2288
|
|
|
2289
|
@Transient
|
|
2290
|
public String getExsiccatum() throws MethodNotSupportedByDerivedUnitTypeException {
|
|
2291
|
testDerivedUnit();
|
|
2292
|
if (derivedUnit.getRecordBasis().isPreservedSpecimen()) {
|
|
2293
|
return derivedUnit.getExsiccatum();
|
|
2294
|
} else {
|
|
2295
|
if (this.config.isThrowExceptionForNonSpecimenPreservationMethodRequest()) {
|
|
2296
|
throw new MethodNotSupportedByDerivedUnitTypeException(
|
|
2297
|
"An exsiccatum is only available in derived units of type 'Specimen' or 'Fossil'");
|
|
2298
|
} else {
|
|
2299
|
return null;
|
|
2300
|
}
|
|
2301
|
}
|
|
2302
|
}
|
|
2303
|
|
|
2304
|
public void setExsiccatum(String exsiccatum) throws Exception {
|
|
2305
|
testDerivedUnit();
|
|
2306
|
if (derivedUnit.getRecordBasis().isPreservedSpecimen()) {
|
|
2307
|
derivedUnit.setExsiccatum(exsiccatum);
|
|
2308
|
} else {
|
|
2309
|
if (this.config.isThrowExceptionForNonSpecimenPreservationMethodRequest()) {
|
|
2310
|
throw new MethodNotSupportedByDerivedUnitTypeException(
|
|
2311
|
"An exsiccatum is only available in derived units of type 'Specimen' or 'Fossil'");
|
|
2312
|
} else {
|
|
2313
|
return;
|
|
2314
|
}
|
|
2315
|
}
|
|
2316
|
}
|
|
2317
|
|
|
2318
|
/**
|
|
2319
|
* Returns the original label information of the derived unit.
|
|
2320
|
* @return
|
|
2321
|
*/
|
|
2322
|
@Transient
|
|
2323
|
public String getOriginalLabelInfo() {
|
|
2324
|
return ! checkDerivedUnit()? null : derivedUnit.getOriginalLabelInfo();
|
|
2325
|
}
|
|
2326
|
public void setOriginalLabelInfo(String originalLabelInfo) {
|
|
2327
|
testDerivedUnit();
|
|
2328
|
derivedUnit.setOriginalLabelInfo(originalLabelInfo);
|
|
2329
|
}
|
|
2330
|
|
|
2331
|
// **** sources **/
|
|
2332
|
public void addSource(IdentifiableSource source) {
|
|
2333
|
this.baseUnit().addSource(source);
|
|
2334
|
}
|
|
2335
|
|
|
2336
|
/**
|
|
2337
|
* Creates an {@link IOriginalSource orignal source} or type ,
|
|
2338
|
* adds it to the specimen and returns it.
|
|
2339
|
*
|
|
2340
|
* @param reference
|
|
2341
|
* @param microReference
|
|
2342
|
* @param originalNameString
|
|
2343
|
* @return
|
|
2344
|
*/
|
|
2345
|
public IdentifiableSource addSource(OriginalSourceType type, Reference reference, String microReference, String originalNameString) {
|
|
2346
|
IdentifiableSource source = IdentifiableSource.NewInstance(type, null, null, reference, microReference);
|
|
2347
|
source.setOriginalNameString(originalNameString);
|
|
2348
|
addSource(source);
|
|
2349
|
return source;
|
|
2350
|
}
|
|
2351
|
|
|
2352
|
@Transient
|
|
2353
|
public Set<IdentifiableSource> getSources() {
|
|
2354
|
return baseUnit().getSources();
|
|
2355
|
}
|
|
2356
|
|
|
2357
|
public void removeSource(IdentifiableSource source) {
|
|
2358
|
this.baseUnit().removeSource(source);
|
|
2359
|
}
|
|
2360
|
|
|
2361
|
//*** identifiers ***/
|
|
2362
|
|
|
2363
|
|
|
2364
|
public void addIdentifier(Identifier identifier) {
|
|
2365
|
this.baseUnit().addIdentifier(identifier);
|
|
2366
|
}
|
|
2367
|
|
|
2368
|
@Transient
|
|
2369
|
public List<Identifier> getIdentifiers() {
|
|
2370
|
return baseUnit().getIdentifiers();
|
|
2371
|
}
|
|
2372
|
|
|
2373
|
public void removeIdentifier(Identifier identifier) {
|
|
2374
|
this.baseUnit().removeIdentifier(identifier);
|
|
2375
|
}
|
|
2376
|
|
|
2377
|
@Transient
|
|
2378
|
public Set<Rights> getRights() {
|
|
2379
|
return baseUnit().getRights();
|
|
2380
|
}
|
|
2381
|
|
|
2382
|
/**
|
|
2383
|
* @return the collection
|
|
2384
|
*/
|
|
2385
|
@Transient
|
|
2386
|
public Collection getCollection() {
|
|
2387
|
return ! checkDerivedUnit()? null : derivedUnit.getCollection();
|
|
2388
|
}
|
|
2389
|
|
|
2390
|
/**
|
|
2391
|
* @param collection
|
|
2392
|
* the collection to set
|
|
2393
|
*/
|
|
2394
|
public void setCollection(Collection collection) {
|
|
2395
|
testDerivedUnit();
|
|
2396
|
derivedUnit.setCollection(collection);
|
|
2397
|
}
|
|
2398
|
|
|
2399
|
// annotation
|
|
2400
|
public void addAnnotation(Annotation annotation) {
|
|
2401
|
this.baseUnit().addAnnotation(annotation);
|
|
2402
|
}
|
|
2403
|
|
|
2404
|
@Transient
|
|
2405
|
public void getAnnotations() {
|
|
2406
|
this.baseUnit().getAnnotations();
|
|
2407
|
}
|
|
2408
|
|
|
2409
|
public void removeAnnotation(Annotation annotation) {
|
|
2410
|
this.baseUnit().removeAnnotation(annotation);
|
|
2411
|
}
|
|
2412
|
|
|
2413
|
// ******************************* Events ***************************
|
|
2414
|
|
|
2415
|
//set of events that were currently fired by this facades field unit
|
|
2416
|
//to avoid recursive fireing of the same event
|
|
2417
|
private final Set<PropertyChangeEvent> fireingEvents = new HashSet<>();
|
|
2418
|
|
|
2419
|
/**
|
|
2420
|
* @return
|
|
2421
|
*/
|
|
2422
|
private void addNewEventPropagationListener(CdmBase listeningObject) {
|
|
2423
|
//if there is already a listener, don't do anything
|
|
2424
|
for (PropertyChangeListener listener : this.listeners.keySet()){
|
|
2425
|
if (listeners.get(listener) == listeningObject){
|
|
2426
|
return;
|
|
2427
|
}
|
|
2428
|
}
|
|
2429
|
//create new listener
|
|
2430
|
PropertyChangeListener listener = new PropertyChangeListener() {
|
|
2431
|
@Override
|
|
2432
|
public void propertyChange(PropertyChangeEvent event) {
|
|
2433
|
if (derivedUnit != null){
|
|
2434
|
derivedUnit.firePropertyChange(event);
|
|
2435
|
}else{
|
|
2436
|
if (! event.getSource().equals(fieldUnit) && ! fireingEvents.contains(event) ){
|
|
2437
|
fireingEvents.add(event);
|
|
2438
|
fieldUnit.firePropertyChange(event);
|
|
2439
|
fireingEvents.remove(event);
|
|
2440
|
}
|
|
2441
|
}
|
|
2442
|
}
|
|
2443
|
};
|
|
2444
|
//add listener to listening object and to list of listeners
|
|
2445
|
listeningObject.addPropertyChangeListener(listener);
|
|
2446
|
listeners.put(listener, listeningObject);
|
|
2447
|
}
|
|
2448
|
|
|
2449
|
// **************** Other Collections ********************************
|
|
2450
|
|
|
2451
|
/**
|
|
2452
|
* Creates a duplicate specimen which derives from the same derivation event
|
|
2453
|
* as the facade specimen and adds collection data to it (all data available
|
|
2454
|
* in DerivedUnit and Specimen. Data from SpecimenOrObservationBase and
|
|
2455
|
* above are not yet shared at the moment.
|
|
2456
|
*
|
|
2457
|
* @param collection
|
|
2458
|
* @param catalogNumber
|
|
2459
|
* @param accessionNumber
|
|
2460
|
* @param storedUnder
|
|
2461
|
* @param preservation
|
|
2462
|
* @return
|
|
2463
|
*/
|
|
2464
|
public DerivedUnit addDuplicate(Collection collection, String catalogNumber,
|
|
2465
|
String accessionNumber, TaxonName storedUnder, PreservationMethod preservation){
|
|
2466
|
testDerivedUnit();
|
|
2467
|
DerivedUnit duplicate = DerivedUnit.NewPreservedSpecimenInstance();
|
|
2468
|
duplicate.setDerivedFrom(getDerivationEvent(CREATE));
|
|
2469
|
duplicate.setCollection(collection);
|
|
2470
|
duplicate.setCatalogNumber(catalogNumber);
|
|
2471
|
duplicate.setAccessionNumber(accessionNumber);
|
|
2472
|
duplicate.setStoredUnder(storedUnder);
|
|
2473
|
duplicate.setPreservation(preservation);
|
|
2474
|
return duplicate;
|
|
2475
|
}
|
|
2476
|
|
|
2477
|
public void addDuplicate(DerivedUnit duplicateSpecimen) {
|
|
2478
|
testDerivedUnit();
|
|
2479
|
getDerivationEvent(CREATE).addDerivative(duplicateSpecimen);
|
|
2480
|
}
|
|
2481
|
|
|
2482
|
@Transient
|
|
2483
|
public Set<DerivedUnit> getDuplicates() {
|
|
2484
|
if (! checkDerivedUnit()){
|
|
2485
|
return new HashSet<>();
|
|
2486
|
}
|
|
2487
|
Set<DerivedUnit> result = new HashSet<>();
|
|
2488
|
if (hasDerivationEvent()) {
|
|
2489
|
for (DerivedUnit derivedUnit : getDerivationEvent(CREATE)
|
|
2490
|
.getDerivatives()) {
|
|
2491
|
if (derivedUnit.isInstanceOf(DerivedUnit.class)
|
|
2492
|
&& !derivedUnit.equals(this.derivedUnit)) {
|
|
2493
|
result.add(CdmBase.deproxy(derivedUnit, DerivedUnit.class));
|
|
2494
|
}
|
|
2495
|
}
|
|
2496
|
}
|
|
2497
|
return result;
|
|
2498
|
}
|
|
2499
|
|
|
2500
|
public void removeDuplicate(DerivedUnit duplicateSpecimen) {
|
|
2501
|
testDerivedUnit();
|
|
2502
|
if (hasDerivationEvent()) {
|
|
2503
|
getDerivationEvent(CREATE).removeDerivative(duplicateSpecimen);
|
|
2504
|
}
|
|
2505
|
}
|
|
2506
|
|
|
2507
|
public SpecimenOrObservationBase<?> baseUnit(){
|
|
2508
|
if(derivedUnit!=null){
|
|
2509
|
return derivedUnit;
|
|
2510
|
}
|
|
2511
|
else if(fieldUnit!=null){
|
|
2512
|
return fieldUnit;
|
|
2513
|
}
|
|
2514
|
else{
|
|
2515
|
throw new IllegalStateException("A DerivedUnitFacade must always have either a field unit or a derived unit");
|
|
2516
|
}
|
|
2517
|
}
|
|
2518
|
|
|
2519
|
/**
|
|
2520
|
* @return true if <code>this.derivedUnit</code> exists
|
|
2521
|
*/
|
|
2522
|
private boolean checkDerivedUnit() {
|
|
2523
|
if (derivedUnit == null){
|
|
2524
|
return false;
|
|
2525
|
}else{
|
|
2526
|
return true;
|
|
2527
|
}
|
|
2528
|
}
|
|
2529
|
|
|
2530
|
private void testDerivedUnit() /* throws MethodNotSupportedByDerivedUnitTypeException */ {
|
|
2531
|
if (derivedUnit == null){
|
|
2532
|
throw new IllegalStateException("This method is not allowed for this specimen or observation type. Probably you have tried to add specimen(derived unit) information to a field unit");
|
|
2533
|
}
|
|
2534
|
}
|
|
2535
|
|
|
2536
|
public void setType(SpecimenOrObservationType type) {
|
|
2537
|
if (type == null){
|
|
2538
|
throw new IllegalArgumentException("The type of a specimen or observation may not be null");
|
|
2539
|
}
|
|
2540
|
SpecimenOrObservationBase<?> baseUnit = baseUnit();
|
|
2541
|
if(baseUnit.isInstanceOf(FieldUnit.class) && !type.isFieldUnit()){
|
|
2542
|
throw new IllegalArgumentException("A FieldUnit may only be of type FieldUnit") ;
|
|
2543
|
}
|
|
2544
|
else if(baseUnit.isInstanceOf(DerivedUnit.class) && type.isFieldUnit()){
|
|
2545
|
throw new IllegalArgumentException("A derived unit may not be of type FieldUnit") ;
|
|
2546
|
}
|
|
2547
|
baseUnit.setRecordBasis(type);
|
|
2548
|
}
|
|
2549
|
|
|
2550
|
public SpecimenOrObservationType getType() {
|
|
2551
|
return baseUnit().getRecordBasis();
|
|
2552
|
}
|
|
2553
|
|
|
2554
|
/**
|
|
2555
|
* Closes this facade. As a minimum this method removes all listeners created by this facade from their
|
|
2556
|
* listening objects.
|
|
2557
|
*/
|
|
2558
|
public void close(){
|
|
2559
|
for (PropertyChangeListener listener : this.listeners.keySet()){
|
|
2560
|
CdmBase listeningObject = listeners.get(listener);
|
|
2561
|
listeningObject.removePropertyChangeListener(listener);
|
|
2562
|
}
|
|
2563
|
}
|
|
2564
|
|
|
2565
|
|
|
2566
|
/**
|
|
2567
|
* Computes the correct distance string for given values for min, max and text.
|
|
2568
|
* If text is not blank, text is returned, otherwise "min - max" or a single value is returned.
|
|
2569
|
* @param min min value as number
|
|
2570
|
* @param max max value as number
|
|
2571
|
* @param text text representation of distance
|
|
2572
|
* @return the formatted distance string
|
|
2573
|
*/
|
|
2574
|
private String distanceString(Number min, Number max, String text, String unit) {
|
|
2575
|
if (StringUtils.isNotBlank(text)){
|
|
2576
|
return text;
|
|
2577
|
}else{
|
|
2578
|
String minStr = min == null? null : String.valueOf(min);
|
|
2579
|
String maxStr = max == null? null : String.valueOf(max);
|
|
2580
|
String result = CdmUtils.concat(UTF8.EN_DASH_SPATIUM.toString(), minStr, maxStr);
|
|
2581
|
if (StringUtils.isNotBlank(result) && StringUtils.isNotBlank(unit)){
|
|
2582
|
result = result + " " + unit;
|
|
2583
|
}
|
|
2584
|
return result;
|
|
2585
|
}
|
|
2586
|
}
|
|
2587
|
|
|
2588
|
/**
|
|
2589
|
* First checks the inner field unit for the publish flag. If set to <code>true</code>
|
|
2590
|
* then <code>true</code> is returned. If the field unit is <code>null</code> the inner derived unit
|
|
2591
|
* is checked.
|
|
2592
|
* @return <code>true</code> if this facade can be published
|
|
2593
|
*/
|
|
2594
|
public boolean isPublish(){
|
|
2595
|
if(fieldUnit!=null){
|
|
2596
|
return fieldUnit.isPublish();
|
|
2597
|
}
|
|
2598
|
if(derivedUnit!=null){
|
|
2599
|
return derivedUnit.isPublish();
|
|
2600
|
}
|
|
2601
|
return false;
|
|
2602
|
}
|
|
2603
|
}
|