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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.facade;
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import java.io.FileNotFoundException;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.hibernate.proxy.HibernateProxy;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.Ignore;
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import org.junit.Test;
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import org.unitils.dbunit.annotation.DataSet;
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import org.unitils.spring.annotation.SpringBeanByType;
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import eu.etaxonomy.cdm.api.service.IDescriptionService;
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import eu.etaxonomy.cdm.api.service.IOccurrenceService;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.Point;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.occurrence.Collection;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;
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import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest;
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/**
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* NOTE: The only reason for having this test is to test if injection of the cache strategy into a
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* standard specimen works. Once we use another default cache strategy then the derived unit facade
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* this test can be deleted or adapted and moved to cdmlib-model.
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*
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* @author a.mueller
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* @date 03.06.2010
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*
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*/
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public class DerivedUnitFacadeCacheStrategyInjectionTest extends CdmTransactionalIntegrationTest {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DerivedUnitFacadeCacheStrategyInjectionTest.class);
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@SpringBeanByType
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private IOccurrenceService occService;
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@SpringBeanByType
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private ITaxonService taxonService;
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@SpringBeanByType
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private IDescriptionService descService;
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private static final UUID taxonUuid = UUID.fromString("10cfb372-0b1a-4d82-9707-c5ffd2b93a55");
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private DerivedUnit specimen;
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private DerivationEvent derivationEvent;
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private FieldUnit fieldUnit;
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private GatheringEvent gatheringEvent;
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private final Integer absoluteElevation = 40;
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private final Integer absoluteElevationError = 2;
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private final Team collector = Team.NewInstance();
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private final String collectingMethod = "Collection Method";
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private final Double distanceToGround = 22.0;
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private final Double distanceToSurface = 50.0;
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private final ReferenceSystem referenceSystem = ReferenceSystem.WGS84();
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private final Point exactLocation = Point.NewInstance(12.3, 10.567, referenceSystem, 22);
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private final String gatheringEventDescription = "A nice gathering description";
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private final TimePeriod gatheringPeriod = TimePeriodParser.parseString("03.05.2005");
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private final String ecology = "sand dunes";
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private final String plantDescription = "flowers blue";
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private final String fieldNumber = "5678";
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private final String fieldNotes = "such a beautiful specimen";
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private Person primaryCollector;
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private final Integer individualCount = 1;
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private final DefinedTerm lifeStage = DefinedTerm.NewStageInstance("A wonderful stage", "stage", "st");
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private final DefinedTerm sex = DefinedTerm.NewSexInstance("FemaleMale", "FM", "FM");
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private final NamedArea country = Country.GERMANY();
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private final LanguageString locality = LanguageString.NewInstance("Berlin-Dahlem, E side of Englerallee", Language.DEFAULT());
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private final String exsiccatum = "Greuter, Pl. Dahlem. 456";
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private final String accessionNumber = "8909756";
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private final String catalogNumber = "UU879873590";
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private final TaxonName taxonName = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS(), "Abies", null, null, null, null, null, null, null);
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private final String collectorsNumber = "234589913A34";
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private final Collection collection = Collection.NewInstance();
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private final PreservationMethod preservationMethod = PreservationMethod.NewInstance(null, "my prservation");
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private DerivedUnit collectionSpecimen;
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private GatheringEvent existingGatheringEvent;
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private DerivationEvent firstDerivationEvent;
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private FieldUnit firstFieldObject;
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private final Media media1 = Media.NewInstance();
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//****************************** SET UP *****************************************/
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// /**
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// * @throws java.lang.Exception
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// */
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// @BeforeClass
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// public static void setUpBeforeClass() throws Exception {
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// // FIXME maybe this will cause problems in other tests
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// // INDEED !!!! it causes problems thus this is replaced by making this test a CdmIntegrationTest !!!
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// new DefaultTermInitializer().initialize();
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// }
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/**
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* @throws java.lang.Exception
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*/
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@Before
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public void setUp() throws Exception {
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specimen = DerivedUnit.NewPreservedSpecimenInstance();
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derivationEvent = DerivationEvent.NewInstance(DerivationEventType.ACCESSIONING());
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specimen.setDerivedFrom(derivationEvent);
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fieldUnit = FieldUnit.NewInstance();
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fieldUnit.addDerivationEvent(derivationEvent);
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gatheringEvent = GatheringEvent.NewInstance();
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fieldUnit.setGatheringEvent(gatheringEvent);
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gatheringEvent.setAbsoluteElevation(absoluteElevation);
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// gatheringEvent.setAbsoluteElevationError(absoluteElevationError);
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gatheringEvent.setActor(collector);
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gatheringEvent.setCollectingMethod(collectingMethod);
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gatheringEvent.setDistanceToGround(distanceToGround);
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gatheringEvent.setDistanceToWaterSurface(distanceToSurface);
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gatheringEvent.setExactLocation(exactLocation);
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gatheringEvent.setDescription(gatheringEventDescription);
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gatheringEvent.setTimeperiod(gatheringPeriod);
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gatheringEvent.setLocality(locality);
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gatheringEvent.setCountry(country);
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fieldUnit.setFieldNumber(fieldNumber);
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fieldUnit.setFieldNotes(fieldNotes);
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fieldUnit.setIndividualCount(individualCount);
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fieldUnit.setSex(sex);
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fieldUnit.setLifeStage(lifeStage);
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primaryCollector = Person.NewTitledInstance("Kilian");
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collector.addTeamMember(primaryCollector);
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Person secondCollector = Person.NewInstance();
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secondCollector.setFirstname("Andreas");
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secondCollector.setLastname("Muller");
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collector.addTeamMember(secondCollector);
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Person thirdCollector = Person.NewTitledInstance("Kohlbecker");
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collector.addTeamMember(thirdCollector);
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fieldUnit.setPrimaryCollector(primaryCollector);
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specimen.setAccessionNumber(accessionNumber);
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specimen.setCatalogNumber(catalogNumber);
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specimen.setStoredUnder(taxonName);
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specimen.setCollection(collection);
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specimen.setPreservation(preservationMethod);
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specimen.setExsiccatum(exsiccatum);
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//existing specimen with 2 derivation events in line
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collectionSpecimen = DerivedUnit.NewPreservedSpecimenInstance();
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DerivedUnit middleSpecimen = DerivedUnit.NewPreservedSpecimenInstance();
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firstFieldObject = FieldUnit.NewInstance();
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//TODO maybe we should define concrete event types here
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DerivationEvent lastDerivationEvent = DerivationEvent.NewInstance(null);
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DerivationEvent middleDerivationEvent = DerivationEvent.NewInstance(null);
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firstDerivationEvent = DerivationEvent.NewInstance(null);
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collectionSpecimen.setDerivedFrom(lastDerivationEvent);
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lastDerivationEvent.addOriginal(middleSpecimen);
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middleSpecimen.setDerivedFrom(firstDerivationEvent);
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firstDerivationEvent.addOriginal(firstFieldObject);
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existingGatheringEvent = GatheringEvent.NewInstance();
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firstFieldObject.setGatheringEvent(existingGatheringEvent);
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy#getTitleCache(eu.etaxonomy.cdm.model.occurrence.Specimen)}.
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*/
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@Test
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public void testGetSpecimenTitleCache() {
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// String correctCache = "Germany, Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10\u00B034'1.2\"N, 12\u00B018'E (WGS84), sand dunes, 3.5.2005, Kilian 5678, A. Muller & Kohlbecker; Greuter, Pl. Dahlem. 456 (B 8909756); flowers blue.";
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String correctCache = "Germany, Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10\u00B034'1.2\"N, 12\u00B018'E (WGS84), 3.5.2005, Kilian 5678, A. Muller & Kohlbecker; Greuter, Pl. Dahlem. 456 (B 8909756).";
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// DescriptionElementBase ecologyItem = TextData.NewInstance(Feature.ECOLOGY(), ecology, Language.DEFAULT(), null);
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// SpecimenDescription fieldUnitDescription = SpecimenDescription.NewInstance(fieldUnit);
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// fieldUnitDescription.addElement(ecologyItem);
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//// specimenFacade.setEcology(ecology);
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// DescriptionElementBase plantDescItem = TextData.NewInstance(Feature.DESCRIPTION(), plantDescription, Language.DEFAULT(), null);
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// fieldUnitDescription.addElement(plantDescItem);
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//// specimenFacade.setPlantDescription(plantDescription);
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collection.setCode("B");
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Assert.assertEquals(correctCache, specimen.getTitleCache());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy#getTitleCache(eu.etaxonomy.cdm.model.occurrence.Specimen)}.
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*/
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@Test
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public void testGetFieldUnitTitleCache() {
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// String correctCache = "Germany, Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10\u00B034'1.2\"N, 12\u00B018'E (WGS84), sand dunes, 3.5.2005, Kilian 5678, A. Muller & Kohlbecker; flowers blue.";
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String correctCache = "Germany, Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10\u00B034'1.2\"N, 12\u00B018'E (WGS84), 3.5.2005, Kilian 5678, A. Muller & Kohlbecker.";
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// DescriptionElementBase ecologyItem = TextData.NewInstance(Feature.ECOLOGY(), ecology, Language.DEFAULT(), null);
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// SpecimenDescription fieldUnitDescription = SpecimenDescription.NewInstance(fieldUnit);
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// fieldUnitDescription.addElement(ecologyItem);
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// DescriptionElementBase plantDescItem = TextData.NewInstance(Feature.DESCRIPTION(), plantDescription, Language.DEFAULT(), null);
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// fieldUnitDescription.addElement(plantDescItem);
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collection.setCode("B"); //no effect
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Assert.assertEquals(correctCache, fieldUnit.getTitleCache());
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}
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//Test if even a hibernate proxy (javassist) class correctly loads the DerivedUnitCacheStrategy.
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@Test
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@DataSet
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public void testPersistedDerivedUnit(){
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Taxon taxon = (Taxon)this.taxonService.find(taxonUuid);
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IndividualsAssociation indivAssoc = getDescriptionElement(taxon, 5000);
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SpecimenOrObservationBase<?> specimen = indivAssoc.getAssociatedSpecimenOrObservation();
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Assert.assertTrue("Specimen should be proxy otherwise the test does not test what it should", specimen instanceof HibernateProxy);
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DerivedUnit myUnit = CdmBase.deproxy(specimen, DerivedUnit.class);
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myUnit.setTitleCache(null);
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String expectedDerivedUnitCache = "Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10°34'1.2\"N, 12°18'E, 3.5.2005, Kilian 5678, A. Muller & Kohlbecker; Greuter, Pl. Dahlem. 456 (8909756).";
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Assert.assertEquals(expectedDerivedUnitCache, myUnit.getTitleCache());
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}
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@Test
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@DataSet
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public void testPersistedFieldUnit(){
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Taxon taxon = (Taxon)this.taxonService.find(taxonUuid);
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IndividualsAssociation indivAssoc = getDescriptionElement(taxon, 5001);
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SpecimenOrObservationBase<?> fieldUnit = indivAssoc.getAssociatedSpecimenOrObservation();
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Assert.assertTrue("FieldUnit should be proxy otherwise the test does not test what it should", fieldUnit instanceof HibernateProxy);
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FieldUnit myFieldUnit = CdmBase.deproxy(fieldUnit, FieldUnit.class);
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myFieldUnit.setTitleCache(null);
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String expectedFieldUnitCache = "Berlin-Dahlem, E side of Englerallee, alt. 40 m, 10°34'1.2\"N, 12°18'E, 3.5.2005, Kilian 5678, A. Muller & Kohlbecker.";
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Assert.assertEquals(expectedFieldUnitCache, myFieldUnit.getTitleCache());
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}
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/**
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* @param taxon
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* @param i
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* @return
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*/
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private IndividualsAssociation getDescriptionElement(Taxon taxon, int id) {
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for (DescriptionElementBase el : taxon.getDescriptions().iterator().next().getElements()){
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if (el.getId() == id) {
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return (IndividualsAssociation)el;
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}
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}
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return null;
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}
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@Override
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@Test
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@Ignore
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public void createTestDataSet() throws FileNotFoundException {
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// specimen.setUuid(derivedUnitUuid);
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// fieldUnit.setUuid(fieldUnitUuid);
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// Taxon taxon = Taxon.NewInstance(null, null);
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// taxon.setUuid(taxonUuid);
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// TaxonDescription desc = TaxonDescription.NewInstance(taxon);
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//
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// IndividualsAssociation indAssoc = IndividualsAssociation.NewInstance(specimen);
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// desc.addElement(indAssoc);
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//
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// this.taxonService.saveOrUpdate(taxon);
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//
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// setComplete();
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// endTransaction();
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//
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// writeDbUnitDataSetFile(new String[]{"SpecimenOrObservationBase",
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// "DerivationEvent", "DescriptionBase","DescriptionElementBase",
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// "GatheringEvent","AgentBase","LanguageString","TaxonName",
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// "TaxonBase","Collection",
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// "MaterialOrMethodEvent","SpecimenOrObservationBase_DerivationEvent"});
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}
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}
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