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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.reference.INomenclaturalReference;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.strategy.parser.INonViralNameParser;
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
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/**
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* @author a.mueller
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* @date 30.01.2017
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*
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*/
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public class TaxonNameFactory {
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static private INonViralNameParser<?> nameParser = new NonViralNameParserImpl();
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// *************** FACTORY METHODS ********************************/
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// /**
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// * @param code
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// * @return
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// */
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// public static Class<? extends IdentifiableEntity> NewNameInstance(NomenclaturalCode code) {
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// code.getNewTaxonNameInstance(rank)
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// }
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/**
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* Creates a new non viral taxon name instance
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* only containing its {@link common.Rank rank} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy default cache strategy}.
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*
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* @param rank the rank to be assigned to <i>this</i> non viral taxon name
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see #NonViralName(Rank, HomotypicalGroup)
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* @see #NonViralName()
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* @see #NonViralName(Rank, String, String, String, String, TeamOrPersonBase, Reference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy
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*/
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public static TaxonName NewNonViralInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.NonViral, rank, null);
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}
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/**
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* Creates a new non viral taxon name instance
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* only containing its {@link common.Rank rank},
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* its {@link HomotypicalGroup homotypical group} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy default cache strategy}.
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* The new non viral taxon name instance will be also added to the set of
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* non viral taxon names belonging to this homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> non viral taxon name
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* @param homotypicalGroup the homotypical group to which <i>this</i> non viral taxon name belongs
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* @see #NewInstance(Rank)
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* @see #NonViralName(Rank, HomotypicalGroup)
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* @see #NonViralName()
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* @see #NonViralName(Rank, String, String, String, String, TeamOrPersonBase, Reference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy
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*/
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public static TaxonName NewNonViralInstance(Rank rank, HomotypicalGroup homotypicalGroup){
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return TaxonName.NewInstance(NomenclaturalCode.NonViral, rank, homotypicalGroup);
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}
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/**
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* Creates a new viral taxon name instance only containing its {@link Rank rank}.
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*
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* @param rank the rank to be assigned to <i>this</i> viral taxon name
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* @see #ViralName(Rank)
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*/
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public static TaxonName NewViralInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.ICVCN, rank, null);
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}
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/**
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* Creates a new bacterial taxon name instance
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* only containing its {@link Rank rank} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy default cache strategy}.
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*
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* @param rank the rank to be assigned to <i>this</i> bacterial taxon name
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see #BacterialName(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy
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*/
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public static TaxonName NewBacterialInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.ICNB, rank, null);
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}
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/**
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* Creates a new bacterial taxon name instance
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* only containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy default cache strategy}.
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* The new bacterial taxon name instance will be also added to the set of
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* bacterial taxon names belonging to this homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> bacterial taxon name
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* @param homotypicalGroup the homotypical group to which <i>this</i> bacterial taxon name belongs
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* @see #NewInstance(Rank)
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* @see #BacterialName(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy
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* @see eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy
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*/
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public static IBacterialName NewBacterialInstance(Rank rank, HomotypicalGroup homotypicalGroup){
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return TaxonName.NewInstance(NomenclaturalCode.ICNB, rank, homotypicalGroup);
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}
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/**
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* Creates a new zoological taxon name instance
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* only containing its {@link Rank rank} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy default cache strategy}.
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*
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* @param rank the rank to be assigned to <i>this</i> zoological taxon name
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* @see #ZoologicalName(Rank, HomotypicalGroup)
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see #NewZoologicalInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
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*/
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public static TaxonName NewZoologicalInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.ICZN, rank, null);
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}
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/**
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* Creates a new zoological taxon name instance
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* only containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy default cache strategy}.
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* The new zoological taxon name instance will be also added to the set of
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* zoological taxon names belonging to the given homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> zoological taxon name
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* @param homotypicalGroup the homotypical group to which <i>this</i> zoological taxon name belongs
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* @see #NewInstance(Rank)
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* @see #NewZoologicalInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see #ZoologicalName(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
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*/
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public static TaxonName NewZoologicalInstance(Rank rank, HomotypicalGroup homotypicalGroup){
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return TaxonName.NewInstance(NomenclaturalCode.ICZN, rank, homotypicalGroup);
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}
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/**
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* Creates a new zoological taxon name instance
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* containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group},
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* its scientific name components, its {@link eu.etaxonomy.cdm.agent.TeamOrPersonBase author(team)},
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* its {@link eu.etaxonomy.cdm.reference.INomenclaturalReference nomenclatural reference} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy default cache strategy}.
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* The new zoological taxon name instance will be also added to the set of
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* zoological taxon names belonging to the given homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> zoological taxon name
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* @param genusOrUninomial the string for <i>this</i> zoological taxon name
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* if its rank is genus or higher or for the genus part
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* if its rank is lower than genus
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* @param infraGenericEpithet the string for the first epithet of
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* <i>this</i> zoological taxon name if its rank is lower than genus
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* and higher than species aggregate
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* @param specificEpithet the string for the first epithet of
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* <i>this</i> zoological taxon name if its rank is species aggregate or lower
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* @param infraSpecificEpithet the string for the second epithet of
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* <i>this</i> zoological taxon name if its rank is lower than species
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* @param combinationAuthorship the author or the team who published <i>this</i> zoological taxon name
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* @param nomenclaturalReference the nomenclatural reference where <i>this</i> zoological taxon name was published
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* @param nomenclMicroRef the string with the details for precise location within the nomenclatural reference
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* @param homotypicalGroup the homotypical group to which <i>this</i> zoological taxon name belongs
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* @see #NewInstance(Rank)
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see #ZoologicalName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
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*/
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public static TaxonName NewZoologicalInstance(Rank rank,
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String genusOrUninomial, String infraGenericEpithet, String specificEpithet, String infraSpecificEpithet,
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TeamOrPersonBase combinationAuthorship, Reference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
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return TaxonName.NewInstance(NomenclaturalCode.ICZN, rank,
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genusOrUninomial, infraGenericEpithet, specificEpithet, infraSpecificEpithet,
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combinationAuthorship, nomenclaturalReference, nomenclMicroRef,
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homotypicalGroup);
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}
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/**
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* Creates a new botanical taxon name instance
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* only containing its {@link Rank rank} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy default cache strategy}.
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*
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* @param rank the rank to be assigned to <i>this</i> botanical taxon name
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* @see #BotanicalName(Rank, HomotypicalGroup)
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see #NewBotanicalInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
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*/
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public static TaxonName NewBotanicalInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.ICNAFP, rank, null);
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}
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/**
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* Creates a new botanical taxon name instance
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* only containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy default cache strategy}.
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* The new botanical taxon name instance will be also added to the set of
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* botanical taxon names belonging to this homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> botanical taxon name
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* @param homotypicalGroup the homotypical group to which <i>this</i> botanical taxon name belongs
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* @see #NewInstance(Rank)
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* @see #NewBotanicalInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see #BotanicalName(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
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*/
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public static IBotanicalName NewBotanicalInstance(Rank rank, HomotypicalGroup homotypicalGroup){
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return TaxonName.NewInstance(NomenclaturalCode.ICNAFP, rank, homotypicalGroup);
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}
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/**
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* Creates a new botanical taxon name instance
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* containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group},
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* its scientific name components, its {@link eu.etaxonomy.cdm.model.agent.TeamOrPersonBase author(team)},
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* its {@link eu.etaxonomy.cdm.model.reference.INomenclaturalReference nomenclatural reference} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy default cache strategy}.
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* The new botanical taxon name instance will be also added to the set of
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* botanical taxon names belonging to this homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> botanical taxon name
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* @param genusOrUninomial the string for <i>this</i> botanical taxon name
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* if its rank is genus or higher or for the genus part
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* if its rank is lower than genus
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* @param infraGenericEpithet the string for the first epithet of
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* <i>this</i> botanical taxon name if its rank is lower than genus
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* and higher than species aggregate
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* @param specificEpithet the string for the first epithet of
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* <i>this</i> botanical taxon name if its rank is species aggregate or lower
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* @param infraSpecificEpithet the string for the second epithet of
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* <i>this</i> botanical taxon name if its rank is lower than species
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* @param combinationAuthorship the author or the team who published <i>this</i> botanical taxon name
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* @param nomenclaturalReference the nomenclatural reference where <i>this</i> botanical taxon name was published
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* @param nomenclMicroRef the string with the details for precise location within the nomenclatural reference
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* @param homotypicalGroup the homotypical group to which <i>this</i> botanical taxon name belongs
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* @see #NewInstance(Rank)
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see ZoologicalName#ZoologicalName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
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*/
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public static TaxonName NewBotanicalInstance(Rank rank,
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String genusOrUninomial, String infraGenericEpithet, String specificEpithet, String infraSpecificEpithet,
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TeamOrPersonBase combinationAuthorship, Reference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
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return TaxonName.NewInstance(NomenclaturalCode.ICNAFP, rank, genusOrUninomial, infraGenericEpithet, specificEpithet, infraSpecificEpithet,
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combinationAuthorship, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
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}
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/**
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* Creates a new cultivar taxon name instance
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* only containing its {@link Rank rank} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy default cache strategy}.
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*
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* @param rank the rank to be assigned to <i>this</i> cultivar taxon name
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* @see #CultivarPlantName(Rank, HomotypicalGroup)
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* @see #NewInstance(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
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*/
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public static TaxonName NewCultivarInstance(Rank rank){
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return TaxonName.NewInstance(NomenclaturalCode.ICNCP, rank, null);
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}
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/**
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* Creates a new cultivar taxon name instance
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* only containing its {@link Rank rank},
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* its {@link HomotypicalGroup homotypical group} and
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* the {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy default cache strategy}.
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* The new cultivar taxon name instance will be also added to the set of
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* cultivar taxon names belonging to this homotypical group.
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*
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* @param rank the rank to be assigned to <i>this</i> cultivar taxon name
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* @param homotypicalGroup the homotypical group to which <i>this</i> cultivar taxon name belongs
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* @see #NewInstance(Rank)
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* @see #CultivarPlantName(Rank, HomotypicalGroup)
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* @see eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
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*/
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public static ICultivarPlantName NewCultivarInstance(Rank rank, HomotypicalGroup homotypicalGroup){
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return TaxonName.NewInstance(NomenclaturalCode.ICNCP, rank, homotypicalGroup);
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}
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/**
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* Returns a botanical taxon name based on parsing a string representing
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* all elements (according to the ICBN) of a botanical taxon name (where
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* the scientific name is an uninomial) including authorship but without
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* nomenclatural reference. If the {@link Rank rank} is not "Genus" it should be
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* set afterwards with the {@link TaxonName#setRank(Rank) setRank} methode.
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*
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* @param fullNameString the string to be parsed
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* @return the new botanical taxon name
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*/
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public static TaxonName PARSED_BOTANICAL(String fullNameString){
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return PARSED_BOTANICAL(fullNameString, Rank.GENUS());
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}
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/**
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* Returns a botanical taxon name based on parsing a string representing
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* all elements (according to the ICBN) of a botanical taxon name including
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* authorship but without nomenclatural reference. The parsing result
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* depends on the given rank of the botanical taxon name to be created.
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*
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* @param fullNameString the string to be parsed
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* @param rank the rank of the taxon name
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* @return the new botanical taxon name
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*/
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public static TaxonName PARSED_BOTANICAL(String fullNameString, Rank rank){
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if (nameParser == null){
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nameParser = new NonViralNameParserImpl();
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}
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return (TaxonName)nameParser.parseFullName(fullNameString, NomenclaturalCode.ICNAFP, rank);
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}
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/**
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* Returns a botanical taxon name based on parsing a string representing
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* all elements (according to the ICBN) of a botanical taxon name (where
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* the scientific name is an uninomial) including authorship and
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* nomenclatural reference. Eventually a new {@link eu.etaxonomy.cdm.model.reference.INomenclaturalReference nomenclatural reference}
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* instance will also be created. If the {@link Rank rank} is not "Genus" it should be
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* set afterwards with the {@link TaxonName#setRank(Rank) setRank} methode.
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*
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* @param fullNameAndReferenceString the string to be parsed
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* @return the new botanical taxon name
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*/
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public static IBotanicalName PARSED_BOTANICAL_REFERENCE(String fullNameAndReferenceString){
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return PARSED_BOTANICAL_REFERENCE(fullNameAndReferenceString, Rank.GENUS());
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}
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350
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/**
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* Returns a botanical taxon name based on parsing a string representing
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* all elements (according to the ICBN) of a botanical taxon name including
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* authorship and nomenclatural reference. The parsing result depends on
|
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354
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* the given rank of the botanical taxon name to be created.
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355
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* Eventually a new {@link eu.etaxonomy.cdm.model.reference.INomenclaturalReference nomenclatural reference}
|
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* instance will also be created.
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*
|
|
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* @param fullNameAndReferenceString the string to be parsed
|
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|
* @param rank the rank of the taxon name
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360
|
* @return the new botanical taxon name
|
|
361
|
*/
|
|
362
|
public static IBotanicalName PARSED_BOTANICAL_REFERENCE(String fullNameAndReferenceString, Rank rank){
|
|
363
|
if (nameParser == null){
|
|
364
|
nameParser = new NonViralNameParserImpl();
|
|
365
|
}
|
|
366
|
return (IBotanicalName)nameParser.parseReferencedName(fullNameAndReferenceString, NomenclaturalCode.ICNAFP, rank);
|
|
367
|
}
|
|
368
|
|
|
369
|
|
|
370
|
|
|
371
|
|
|
372
|
|
|
373
|
/**
|
|
374
|
* Returns a zoological taxon name based on parsing a string representing
|
|
375
|
* all elements (according to the {@link NomenclaturalCode#ICZN() ICZN}) of a zoological taxon name (where
|
|
376
|
* the scientific name is an uninomial) including authorship but without
|
|
377
|
* nomenclatural reference.
|
|
378
|
*
|
|
379
|
* @param fullNameString the string to be parsed
|
|
380
|
* @return the new zoological taxon name
|
|
381
|
*/
|
|
382
|
public static TaxonName PARSED_ZOOLOGICAL(String fullNameString){
|
|
383
|
return PARSED_ZOOLOGICAL(fullNameString, Rank.GENUS());
|
|
384
|
}
|
|
385
|
|
|
386
|
/**
|
|
387
|
* Returns a zoological taxon name based on parsing a string representing
|
|
388
|
* all elements (according to the {@link NomenclaturalCode#ICZN() ICZN})) of a zoological taxon name including
|
|
389
|
* authorship but without nomenclatural reference. The parsing result
|
|
390
|
* depends on the given rank of the zoological taxon name to be created.
|
|
391
|
*
|
|
392
|
* @param fullNameString the string to be parsed
|
|
393
|
* @param rank the rank of the taxon name
|
|
394
|
* @return the new zoological taxon name
|
|
395
|
*/
|
|
396
|
public static TaxonName PARSED_ZOOLOGICAL(String fullNameString, Rank rank){
|
|
397
|
if (nameParser == null){
|
|
398
|
nameParser = new NonViralNameParserImpl();
|
|
399
|
}
|
|
400
|
return (TaxonName)nameParser.parseFullName(fullNameString, NomenclaturalCode.ICZN, rank);
|
|
401
|
}
|
|
402
|
|
|
403
|
|
|
404
|
/**
|
|
405
|
* @param rank
|
|
406
|
* @param genusOrUninomial
|
|
407
|
* @param infraGenericEpithet
|
|
408
|
* @param specificEpithet
|
|
409
|
* @param infraSpecificEpithet
|
|
410
|
* @param combinationAuthorship
|
|
411
|
* @param nomenclaturalReference
|
|
412
|
* @param nomenclMicroRef
|
|
413
|
* @param homotypicalGroup
|
|
414
|
* @return
|
|
415
|
*/
|
|
416
|
public static INonViralName NewNonViralInstance(Rank rank, String genusOrUninomial, String infraGenericEpithet, String specificEpithet,
|
|
417
|
String infraSpecificEpithet, TeamOrPersonBase combinationAuthorship, Reference nomenclaturalReference, String nomenclMicroRef,
|
|
418
|
HomotypicalGroup homotypicalGroup) {
|
|
419
|
return TaxonName.NewInstance(NomenclaturalCode.NonViral, rank, genusOrUninomial, infraGenericEpithet, specificEpithet,
|
|
420
|
infraSpecificEpithet, combinationAuthorship, nomenclaturalReference, nomenclMicroRef,
|
|
421
|
homotypicalGroup);
|
|
422
|
}
|
|
423
|
|
|
424
|
/**
|
|
425
|
* @param rank
|
|
426
|
* @return
|
|
427
|
*/
|
|
428
|
public static TaxonName NewFungusInstance(Rank rank) {
|
|
429
|
return TaxonName.NewInstance(NomenclaturalCode.Fungi, rank, null);
|
|
430
|
}
|
|
431
|
|
|
432
|
}
|