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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNull;
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import java.io.FileNotFoundException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.Collections;
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import java.util.Comparator;
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import java.util.List;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Test;
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import org.unitils.dbunit.annotation.DataSet;
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import org.unitils.spring.annotation.SpringBeanByType;
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import eu.etaxonomy.cdm.api.service.dto.GroupedTaxonDTO;
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.persistence.dao.reference.IReferenceDao;
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import eu.etaxonomy.cdm.persistence.dao.taxon.IClassificationDao;
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import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest;
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/**
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* @author n.hoffmann
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* @created Sep 22, 2009
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*/
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public class ClassificationServiceImplTest extends CdmTransactionalIntegrationTest{
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private static final Logger logger = Logger.getLogger(ClassificationServiceImplTest.class);
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@SpringBeanByType
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IClassificationService service;
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@SpringBeanByType
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ITaxonService taxonService;
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@SpringBeanByType
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ITaxonNodeService taxonNodeService;
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@SpringBeanByType
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IClassificationService classificationService;
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@SpringBeanByType
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IClassificationDao classificationDao;
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@SpringBeanByType
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IReferenceDao referenceDao;
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private static final List<String> NODE_INIT_STRATEGY = Arrays.asList(new String[]{
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"childNodes",
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"childNodes.taxon",
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"childNodes.taxon.name",
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"taxon.sec",
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"taxon.name.*"
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});
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private static final UUID CLASSIFICATION_UUID = UUID.fromString("6c2bc8d9-ee62-4222-be89-4a8e31770878");
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private Comparator<? super TaxonNode> taxonNodeComparator;
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#setTaxonNodeComparator(eu.etaxonomy.cdm.model.taxon.ITaxonNodeComparator)}.
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*/
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// @Test
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public final void testSetTaxonNodeComparator() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadTaxonNodeByTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.UUID, java.util.List)}.
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*/
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// @Test
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public final void testLoadTaxonNodeByTaxon() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadTaxonNode(eu.etaxonomy.cdm.model.taxon.TaxonNode, java.util.List)}.
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*/
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@Test
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public final void testLoadTaxonNode() {
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// fail("Not yet implemented");
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}
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@Test
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@DataSet
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public final void testTaxonNodeByNameComparator() {
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taxonNodeComparator = new TaxonNodeByNameComparator();
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List<TaxonNode> nodes = service.getAllNodes();
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Collections.sort(nodes, taxonNodeComparator);
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// logger.setLevel(Level.DEBUG);
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if(logger.isDebugEnabled()){
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logger.debug("-------------");
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for (TaxonNode node: nodes){
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if (node!= null && node.getTaxon() != null && node.getTaxon().getName()!= null){
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logger.debug(node.getTaxon().getName().getTitleCache() + " [" + node.getTaxon().getName().getRank() + "]");
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}
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}
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}
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Assert.assertEquals("Acacia N.Jacobsen, Bastm. & Yuji Sasaki", nodes.get(1).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia subgen. Aculeiferum Pedley", nodes.get(2).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia sect. Botrycephalae Yuji Sasaki", nodes.get(3).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia subgen. Phyllodineae N.Jacobsen, Bastm. & Yuji Sasaki", nodes.get(4).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia acicularis Willd.", nodes.get(5).getTaxon().getName().getTitleCache());
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Assert.assertEquals("×Acacia acicularis Willd. subsp. acicularis", nodes.get(6).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia cuspidifolia Maslin", nodes.get(7).getTaxon().getName().getTitleCache());
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Assert.assertEquals("Acacia mearnsii Benth", nodes.get(8).getTaxon().getName().getTitleCache());
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/*
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((TaxonNodeByNameComparator)taxonNodeComparator).setSortInfraGenericFirst(false);
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Collections.sort(taxonNodes, taxonNodeComparator);
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Assert.assertEquals("Acacia cuspidifolia Maslin", taxonNodes.get(0).getTaxon().getName().getTitleCache());
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System.err.println();
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for (TaxonNode node: taxonNodes){
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System.err.println(node.getTaxon().getName().getTitleCache() );
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/*for (TaxonNode child : node.getChildNodes()){
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System.err.println(child.getTaxon().getName().getTitleCache());
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}
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}*/
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadRankSpecificRootNodes(eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.name.Rank, java.util.List)}.
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*/
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@Test
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@DataSet
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public final void testListRankSpecificRootNodes(){
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Classification classification = service.find(UUID.fromString("6c2bc8d9-ee62-4222-be89-4a8e31770878"));
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// classification, see createTestDataSet()
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// ClassificationRoot
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// |- Acacia N.Jacobsen, Bastm. & Yuji Sasaki [Genus]
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// | |-- Acacia subg. Aculeiferum Pedley [Subgenus]
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// | |-- Acacia subg. Phyllodineae N.Jacobsen, Bastm. & Yuji Sasaki [Subgenus]
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// | | |-- Acacia sect. Botrycephalae Yuji Sasaki [Section (Botany)]
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// | |------- Acacia cuspidifolia Maslin [Species]
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// | |------- Acacia mearnsii Benth [Species]
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// |---------- Acacia acicularis Willd. [Species]
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// |-- ×Acacia acicularis Willd. subsp. acicularis [Subspecies]
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//
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// for more historic Acacia taxonomy see http://lexikon.freenet.de/Akazien
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List<TaxonNode> taxonNodes = service.listRankSpecificRootNodes(null, null, null, null, NODE_INIT_STRATEGY);
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Assert.assertEquals(2, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, null, null, null, NODE_INIT_STRATEGY);
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Assert.assertEquals(2, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SECTION_BOTANY(), null, null, NODE_INIT_STRATEGY);
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Assert.assertEquals(4, taxonNodes.size());
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// also test if the pager works
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SECTION_BOTANY(), 10, 0, NODE_INIT_STRATEGY);
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Assert.assertEquals(4, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SECTION_BOTANY(), 2, 0, NODE_INIT_STRATEGY);
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Assert.assertEquals(2, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SECTION_BOTANY(), 2, 1, NODE_INIT_STRATEGY);
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Assert.assertEquals(2, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SECTION_BOTANY(), 2, 2, NODE_INIT_STRATEGY);
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Assert.assertEquals(0, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SPECIES(), null, null, NODE_INIT_STRATEGY);
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Assert.assertEquals(3, taxonNodes.size());
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// also test if the pager works
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SPECIES(), 10, 0, NODE_INIT_STRATEGY);
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Assert.assertEquals(3, taxonNodes.size());
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taxonNodes = service.listRankSpecificRootNodes(classification, Rank.SPECIES(), 2, 1, NODE_INIT_STRATEGY);
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Assert.assertEquals(1, taxonNodes.size());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadTreeBranch(eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.model.name.Rank, java.util.List)}.
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*/
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// @Test
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public final void testLoadTreeBranch() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadTreeBranchToTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.name.Rank, java.util.List)}.
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*/
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// @Test
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public final void testLoadTreeBranchToTaxon() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadChildNodesOfTaxonNode(eu.etaxonomy.cdm.model.taxon.TaxonNode, java.util.List)}.
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*/
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// @Test
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public final void testLoadChildNodesOfTaxonNode() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#loadChildNodesOfTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List)}.
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*/
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// @Test
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public final void testLoadChildNodesOfTaxon() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getTaxonNodeByUuid(java.util.UUID)}.
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*/
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// @Test
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public final void testGetTaxonNodeByUuid() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getTreeNodeByUuid(java.util.UUID)}.
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*/
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// @Test
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public final void testGetTreeNodeByUuid() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#listClassifications(java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)}.
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*/
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// @Test
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public final void testListClassifications() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getClassificationByUuid(java.util.UUID)}.
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*/
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// @Test
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public final void testGetClassificationByUuid() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#removeTaxonNode(eu.etaxonomy.cdm.model.taxon.TaxonNode)}.
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*/
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// @Test
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public final void testRemoveTaxonNode() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#removeTreeNode(eu.etaxonomy.cdm.model.taxon.ITreeNode)}.
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*/
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// @Test
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public final void testRemoveTreeNode() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#saveTaxonNode(eu.etaxonomy.cdm.model.taxon.TaxonNode)}.
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*/
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// @Test
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public final void testSaveTaxonNode() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#saveTaxonNodeAll(java.util.Collection)}.
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*/
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// @Test
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public final void testSaveTaxonNodeAll() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#saveTreeNode(eu.etaxonomy.cdm.model.taxon.ITreeNode)}.
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*/
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// @Test
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public final void testSaveTreeNode() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification(eu.etaxonomy.cdm.model.taxon.Classification)}.
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*/
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// @Test
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public final void testGetTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getUuidAndTitleCache()}.
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*/
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// @Test
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public final void testGetUuidAndTitleCache() {
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// fail("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getAllMediaForChildNodes(eu.etaxonomy.cdm.model.taxon.TaxonNode, java.util.List, int, int, int, java.lang.String[])}.
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*/
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// @Test
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public final void testGetAllMediaForChildNodesTaxonNodeListOfStringIntIntIntStringArray() {
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// fail("Not yet implemented");
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}
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334
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335
|
/**
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336
|
* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#getAllMediaForChildNodes(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, int, int, int, java.lang.String[])}.
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337
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*/
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338
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// @Test
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339
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public final void testGetAllMediaForChildNodesTaxonClassificationListOfStringIntIntIntStringArray() {
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340
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// fail("Not yet implemented");
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|
341
|
}
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|
342
|
|
|
343
|
/**
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344
|
* Test method for {@link eu.etaxonomy.cdm.api.service.ClassificationServiceImpl#setDao(eu.etaxonomy.cdm.persistence.dao.taxon.IClassificationDao)}.
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345
|
*/
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346
|
@Test
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|
347
|
public final void testSetDaoIClassificationDao() {
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348
|
Assert.assertNotNull(service);
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|
349
|
}
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350
|
|
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351
|
@Test
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352
|
@DataSet
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|
353
|
public final void testGroupTaxaByHigherTaxon(){
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354
|
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355
|
Rank minRank = Rank.GENUS();
|
|
356
|
Rank maxRank = Rank.KINGDOM();
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|
357
|
List<UUID> taxonUuids = new ArrayList<>();
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358
|
taxonUuids.add(acacia_acicularis_uuid);
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359
|
taxonUuids.add(acacia_cuspidifolia_uuid);
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360
|
taxonUuids.add(acacia_sect_botrycephalae_uuid);
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|
361
|
|
|
362
|
List<GroupedTaxonDTO> result = this.service.groupTaxaByHigherTaxon(taxonUuids, CLASSIFICATION_UUID, minRank, maxRank);
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363
|
System.out.println(result);
|
|
364
|
Assert.assertEquals(3, result.size());
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|
365
|
//acacia_acicularis_uuid //is a root taxon with no parents
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366
|
Assert.assertEquals(acacia_acicularis_uuid, result.get(0).getTaxonUuid());
|
|
367
|
Assert.assertNull(result.get(0).getGroupTaxonUuid());
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|
368
|
Assert.assertTrue(StringUtils.isBlank(result.get(0).getGroupTaxonName()));
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|
369
|
//acacia_cuspidifolia_uuid
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|
370
|
Assert.assertEquals(acacia_cuspidifolia_uuid, result.get(1).getTaxonUuid());
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|
371
|
Assert.assertNotNull(result.get(1).getGroupTaxonUuid());
|
|
372
|
Assert.assertFalse(StringUtils.isBlank(result.get(1).getGroupTaxonName()));
|
|
373
|
//acacia_sect_botrycephalae_uuid
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|
374
|
Assert.assertEquals(acacia_sect_botrycephalae_uuid, result.get(2).getTaxonUuid());
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|
375
|
Assert.assertNotNull(result.get(2).getGroupTaxonUuid());
|
|
376
|
Assert.assertFalse(StringUtils.isBlank(result.get(2).getGroupTaxonName()));
|
|
377
|
}
|
|
378
|
|
|
379
|
|
|
380
|
@Test
|
|
381
|
@DataSet
|
|
382
|
public final void testCloneClassification(){
|
|
383
|
Classification classification = classificationDao.load(CLASSIFICATION_UUID);
|
|
384
|
Reference sec = ReferenceFactory.newGeneric();
|
|
385
|
sec.setTitle("cloned sec");
|
|
386
|
Classification clone = (Classification) classificationService.cloneClassification(CLASSIFICATION_UUID, "Cloned classification", sec, TaxonRelationshipType.CONGRUENT_TO()).getCdmEntity();
|
|
387
|
|
|
388
|
List<TaxonNode> childNodes = classification.getChildNodes();
|
|
389
|
for (TaxonNode taxonNode : childNodes) {
|
|
390
|
System.out.println(taxonNode.getTaxon().getTitleCache());
|
|
391
|
}
|
|
392
|
childNodes = clone.getChildNodes();
|
|
393
|
for (TaxonNode taxonNode : childNodes) {
|
|
394
|
System.out.println(taxonNode.getTaxon().getTitleCache());
|
|
395
|
}
|
|
396
|
Set<TaxonNode> allNodes = classification.getAllNodes();
|
|
397
|
assertEquals("# of direct children does not match", classification.getChildNodes().size(), clone.getChildNodes().size());
|
|
398
|
assertEquals("# of all nodes does not match", allNodes.size(), clone.getAllNodes().size());
|
|
399
|
|
|
400
|
//check that original taxon does not appear in cloned classification
|
|
401
|
for (TaxonNode taxonNode : allNodes) {
|
|
402
|
assertNull(clone.getNode(taxonNode.getTaxon()));
|
|
403
|
}
|
|
404
|
}
|
|
405
|
|
|
406
|
|
|
407
|
private UUID acacia_acicularis_uuid = UUID.fromString("90ad2d8f-19a9-4a10-bab3-7d1de5ce1968");
|
|
408
|
private UUID acacia_cuspidifolia_uuid = UUID.fromString("94123e4d-da49-4ed0-9d59-f52a9f7a3618");
|
|
409
|
private UUID acacia_sect_botrycephalae_uuid = UUID.fromString("2c73a166-35d1-483d-b8e8-209214cb6193");
|
|
410
|
|
|
411
|
|
|
412
|
/**
|
|
413
|
* {@inheritDoc}
|
|
414
|
*/
|
|
415
|
@Override
|
|
416
|
// @Test
|
|
417
|
public void createTestDataSet() throws FileNotFoundException {
|
|
418
|
|
|
419
|
// ClassificationRoot
|
|
420
|
// |- Acacia N.Jacobsen, Bastm. & Yuji Sasaki [Genus]
|
|
421
|
// | |-- Acacia subg. Aculeiferum Pedley [Subgenus]
|
|
422
|
// | |-- Acacia subg. Phyllodineae N.Jacobsen, Bastm. & Yuji Sasaki [Subgenus]
|
|
423
|
// | | |-- Acacia sect. Botrycephalae Yuji Sasaki [Section (Botany)]
|
|
424
|
// | |------- Acacia cuspidifolia Maslin [Species]
|
|
425
|
// | |------- Acacia mearnsii Benth [Species]
|
|
426
|
// |---------- Acacia acicularis Willd. [Species]
|
|
427
|
// |-- ×Acacia acicularis Willd. subsp. acicularis [Subspecies]
|
|
428
|
//
|
|
429
|
// for more historic Acacia taxonomy see http://lexikon.freenet.de/Akazien
|
|
430
|
|
|
431
|
// 1. create the entities and save them
|
|
432
|
Classification classification = Classification.NewInstance("Acacia Classification");
|
|
433
|
classification.setUuid(CLASSIFICATION_UUID);
|
|
434
|
classificationDao.save(classification);
|
|
435
|
|
|
436
|
Reference sec = ReferenceFactory.newBook();
|
|
437
|
sec.setTitleCache("Sp. Pl.", true);
|
|
438
|
referenceDao.save(sec);
|
|
439
|
|
|
440
|
BotanicalName acacia_n = TaxonNameBase.NewBotanicalInstance(Rank.GENUS(), "Acacia", null, null, null, null, sec, null, null);
|
|
441
|
acacia_n.setAuthorshipCache("N.Jacobsen, Bastm. & Yuji Sasaki", true);
|
|
442
|
Taxon acacia_t = Taxon.NewInstance(acacia_n, sec);
|
|
443
|
acacia_t.setUuid(UUID.fromString("2fc779ee-7a9d-4586-92ba-1cd774ac77f0"));
|
|
444
|
|
|
445
|
BotanicalName acacia_subg_aculeiferum_n = TaxonNameBase.NewBotanicalInstance(Rank.SUBGENUS(), "Acacia", "Aculeiferum", null, null, null, sec, null, null);
|
|
446
|
acacia_subg_aculeiferum_n.setAuthorshipCache("Pedley", true);
|
|
447
|
Taxon acacia_subg_aculeiferum_t = Taxon.NewInstance(acacia_subg_aculeiferum_n, sec);
|
|
448
|
acacia_subg_aculeiferum_t.setUuid(UUID.fromString("169fea08-6b7a-4315-b111-a774c7fafe30"));
|
|
449
|
|
|
450
|
BotanicalName acacia_subg_phyllodineae_n = TaxonNameBase.NewBotanicalInstance(Rank.SUBGENUS(), "Acacia", "Phyllodineae", null, null, null, sec, null, null);
|
|
451
|
acacia_subg_phyllodineae_n.setAuthorshipCache("N.Jacobsen, Bastm. & Yuji Sasaki", true);
|
|
452
|
Taxon acacia_subg_phyllodineae_t = Taxon.NewInstance(acacia_subg_phyllodineae_n, sec);
|
|
453
|
acacia_subg_phyllodineae_t.setUuid(UUID.fromString("a9da5d43-517e-4ca5-a490-b6a5cd637e9e"));
|
|
454
|
|
|
455
|
BotanicalName acacia_setc_botrycephalae_n = TaxonNameBase.NewBotanicalInstance(Rank.SECTION_BOTANY(), "Acacia", "Botrycephalae", null, null, null, sec, null, null);
|
|
456
|
acacia_setc_botrycephalae_n.setAuthorshipCache("Yuji Sasaki", true);
|
|
457
|
Taxon acacia_sect_botrycephalae_t = Taxon.NewInstance(acacia_setc_botrycephalae_n, sec);
|
|
458
|
acacia_sect_botrycephalae_t.setUuid(acacia_sect_botrycephalae_uuid);
|
|
459
|
|
|
460
|
BotanicalName acacia_cuspidifolia_n = TaxonNameBase.NewBotanicalInstance(Rank.SPECIES(), "Acacia", null,"cuspidifolia", null, null, sec, null, null);
|
|
461
|
acacia_cuspidifolia_n.setAuthorshipCache("Maslin", true);
|
|
462
|
Taxon acacia_cuspidifolia_t = Taxon.NewInstance(acacia_cuspidifolia_n, sec);
|
|
463
|
acacia_cuspidifolia_t.setUuid(acacia_cuspidifolia_uuid);
|
|
464
|
|
|
465
|
BotanicalName acacia_mearnsii_n = TaxonNameBase.NewBotanicalInstance(Rank.SPECIES(), "Acacia", null,"mearnsii", null, null, sec, null, null);
|
|
466
|
acacia_mearnsii_n.setAuthorshipCache("Benth", true);
|
|
467
|
Taxon acacia_mearnsii_t = Taxon.NewInstance(acacia_mearnsii_n, sec);
|
|
468
|
acacia_mearnsii_t.setUuid(UUID.fromString("2e55dc01-71f5-4d42-9bb0-a2448e46dd18"));
|
|
469
|
|
|
470
|
BotanicalName acacia_acicularis_n = TaxonNameBase.NewBotanicalInstance(Rank.SPECIES(), "Acacia", null,"acicularis", null, null, sec, null, null);
|
|
471
|
acacia_acicularis_n.setAuthorshipCache("Willd.", true);
|
|
472
|
Taxon acacia_acicularis_t = Taxon.NewInstance(acacia_acicularis_n, sec);
|
|
473
|
acacia_acicularis_t.setUuid(acacia_acicularis_uuid);
|
|
474
|
|
|
475
|
BotanicalName xacacia_acicularis_n = TaxonNameBase.NewBotanicalInstance(Rank.SUBSPECIES(), "Acacia", null,"acicularis", "acicularis", null, sec, null, null);
|
|
476
|
xacacia_acicularis_n.setAuthorshipCache("Willd.", true);
|
|
477
|
xacacia_acicularis_n.setMonomHybrid(true);
|
|
478
|
System.out.println(xacacia_acicularis_n.getTitleCache());
|
|
479
|
Taxon xacacia_acicularis_t = Taxon.NewInstance(xacacia_acicularis_n, sec);
|
|
480
|
xacacia_acicularis_t.setUuid(UUID.fromString("04d125a6-6adf-4900-97ff-82729618086a"));
|
|
481
|
|
|
482
|
TaxonNode acacia_tn = classification.addChildTaxon(acacia_t, sec, null);
|
|
483
|
TaxonNode acacia_subg_phyllodineae_tn = acacia_tn.addChildTaxon(acacia_subg_phyllodineae_t, sec, null);
|
|
484
|
acacia_subg_phyllodineae_tn.addChildTaxon(acacia_sect_botrycephalae_t, sec, null);
|
|
485
|
acacia_tn.addChildTaxon(acacia_subg_aculeiferum_t, sec, null);
|
|
486
|
acacia_tn.addChildTaxon(acacia_mearnsii_t, sec, null).addChildTaxon(xacacia_acicularis_t, sec, null);
|
|
487
|
acacia_tn.addChildTaxon(acacia_cuspidifolia_t, sec, null);
|
|
488
|
classification.addChildTaxon(acacia_acicularis_t, sec, null);
|
|
489
|
|
|
490
|
classificationDao.save(classification);
|
|
491
|
|
|
492
|
// 2. end the transaction so that all data is actually written to the db
|
|
493
|
setComplete();
|
|
494
|
endTransaction();
|
|
495
|
|
|
496
|
// use the fileNameAppendix if you are creating a data set file which need to be named differently
|
|
497
|
// from the standard name. For example if a single test method needs different data then the other
|
|
498
|
// methods the test class you may want to set the fileNameAppendix when creating the data for this method.
|
|
499
|
String fileNameAppendix = null;
|
|
500
|
|
|
501
|
// 3.
|
|
502
|
writeDbUnitDataSetFile(new String[] {
|
|
503
|
"TAXONBASE", "TAXONNAMEBASE",
|
|
504
|
"REFERENCE",
|
|
505
|
"CLASSIFICATION", "TAXONNODE",
|
|
506
|
"LANGUAGESTRING", "HOMOTYPICALGROUP",
|
|
507
|
"HIBERNATE_SEQUENCES" // IMPORTANT!!!
|
|
508
|
},
|
|
509
|
fileNameAppendix );
|
|
510
|
|
|
511
|
}
|
|
512
|
}
|