1
|
// $Id$
|
2
|
/**
|
3
|
* Copyright (C) 2009 EDIT
|
4
|
* European Distributed Institute of Taxonomy
|
5
|
* http://www.e-taxonomy.eu
|
6
|
*
|
7
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
8
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
9
|
*/
|
10
|
package eu.etaxonomy.cdm.model.taxon;
|
11
|
|
12
|
import java.util.Comparator;
|
13
|
import java.util.StringTokenizer;
|
14
|
|
15
|
import org.apache.log4j.Logger;
|
16
|
|
17
|
import eu.etaxonomy.cdm.common.AbstractStringComparator;
|
18
|
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
|
19
|
import eu.etaxonomy.cdm.model.name.NonViralName;
|
20
|
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
|
21
|
|
22
|
/**
|
23
|
* Comparator that compares two TaxonNode instances by the titleCache of their referenced names.
|
24
|
* @author a.kohlbecker
|
25
|
* @date 24.06.2009
|
26
|
*
|
27
|
*/
|
28
|
//@Component
|
29
|
public class TaxonNodeByNameComparator extends AbstractStringComparator<TaxonNode> implements Comparator<TaxonNode>, ITaxonNodeComparator<TaxonNode> {
|
30
|
|
31
|
private static final String HYBRID_SIGN = "\u00D7";
|
32
|
|
33
|
private static final Logger logger = Logger.getLogger(TaxonNodeByNameComparator.class);
|
34
|
|
35
|
private boolean ignoreHybridSign = true;
|
36
|
private boolean sortInfraGenericFirst = true;
|
37
|
|
38
|
/* (non-Javadoc)
|
39
|
* @see java.util.Comparator#compare(java.lang.Object, java.lang.Object)
|
40
|
*/
|
41
|
@Override
|
42
|
public int compare(TaxonNode o1, TaxonNode o2) {
|
43
|
|
44
|
if (o1 == null && o2 == null) {
|
45
|
return 0;
|
46
|
}
|
47
|
else if (o1 == null) {
|
48
|
return 1;
|
49
|
}
|
50
|
else if (o2 == null) {
|
51
|
return -1;
|
52
|
}
|
53
|
if (o1.equals(o2)){
|
54
|
return 0;
|
55
|
}
|
56
|
|
57
|
String titleCache1 = createSortableTitleCache(o1);
|
58
|
String titleCache2 = createSortableTitleCache(o2);
|
59
|
|
60
|
if(isIgnoreHybridSign()) {
|
61
|
if (logger.isTraceEnabled()){logger.trace("ignoring Hybrid Signs: " + HYBRID_SIGN);}
|
62
|
titleCache1 = titleCache1.replace(HYBRID_SIGN, "");
|
63
|
titleCache2 = titleCache2.replace(HYBRID_SIGN, "");
|
64
|
}
|
65
|
|
66
|
titleCache1 = applySubstitutionRules(titleCache1);
|
67
|
titleCache2 = applySubstitutionRules(titleCache2);
|
68
|
|
69
|
// 1
|
70
|
StringTokenizer s2 = new StringTokenizer(titleCache1, "\"");
|
71
|
if (s2.countTokens()>0){
|
72
|
titleCache1 = "";
|
73
|
}
|
74
|
while(s2.hasMoreTokens()){
|
75
|
titleCache1 += s2.nextToken();
|
76
|
}
|
77
|
|
78
|
// 2
|
79
|
s2 = new StringTokenizer(titleCache2, "\"");
|
80
|
if (s2.countTokens()>0){
|
81
|
titleCache2 = "";
|
82
|
}
|
83
|
|
84
|
while(s2.hasMoreTokens()){
|
85
|
titleCache2 += s2.nextToken();
|
86
|
}
|
87
|
|
88
|
int result = titleCache1.compareTo(titleCache2);
|
89
|
if (result != 0){
|
90
|
return result;
|
91
|
}else{
|
92
|
return o1.getUuid().compareTo(o2.getUuid());
|
93
|
}
|
94
|
}
|
95
|
|
96
|
|
97
|
private String createSortableTitleCache(TaxonNode taxonNode) {
|
98
|
|
99
|
String titleCache = null;
|
100
|
if(taxonNode.getTaxon() != null && taxonNode.getTaxon().getName() != null ){
|
101
|
TaxonNameBase<?,?> name = HibernateProxyHelper.deproxy(taxonNode.getTaxon().getName(), TaxonNameBase.class);
|
102
|
|
103
|
if (name instanceof NonViralName){
|
104
|
if (logger.isTraceEnabled()){logger.trace(name + " isNonViralName");}
|
105
|
NonViralName<?> nonViralName = (NonViralName<?>)name;
|
106
|
if (nonViralName.getGenusOrUninomial() != null){
|
107
|
titleCache = nonViralName.getGenusOrUninomial();
|
108
|
if (name.isSpecies() && nonViralName.getSpecificEpithet() != null){
|
109
|
titleCache = titleCache + " " + nonViralName.getSpecificEpithet();
|
110
|
}
|
111
|
if (name.isInfraSpecific() && nonViralName.getSpecificEpithet() != null
|
112
|
&& nonViralName.getInfraSpecificEpithet() != null){
|
113
|
if (logger.isTraceEnabled()){logger.trace(name + " isInfraSpecific");}
|
114
|
titleCache = titleCache + " " + nonViralName.getInfraSpecificEpithet();
|
115
|
if (nonViralName.getSpecificEpithet().equals(nonViralName.getInfraSpecificEpithet())){
|
116
|
titleCache = nonViralName.getNameCache() + " "+nonViralName.getAuthorshipCache();
|
117
|
}
|
118
|
}
|
119
|
if (name.isInfraGeneric() && nonViralName.getInfraGenericEpithet() != null){
|
120
|
if (logger.isTraceEnabled()){logger.trace(name + " isInfraGeneric");}
|
121
|
titleCache = titleCache + " " + nonViralName.getInfraGenericEpithet();
|
122
|
}
|
123
|
if (nonViralName.isSpeciesAggregate() && nonViralName.getSpecificEpithet() != null){
|
124
|
if (logger.isTraceEnabled()){logger.trace(name + " isSpeciesAggregate");}
|
125
|
titleCache = nonViralName.getGenusOrUninomial() + " " + nonViralName.getSpecificEpithet();
|
126
|
}
|
127
|
}
|
128
|
|
129
|
}
|
130
|
if (titleCache == null){
|
131
|
if (logger.isTraceEnabled()){logger.trace("titleCache still null, using name.getTitleCache()");}
|
132
|
titleCache = name.getTitleCache();
|
133
|
}
|
134
|
}
|
135
|
if (titleCache == null){
|
136
|
if (logger.isTraceEnabled()){logger.trace("titleCache still null, using taxonNode id");}
|
137
|
titleCache = String.valueOf(taxonNode.getId());
|
138
|
}
|
139
|
if (logger.isTraceEnabled()){logger.trace("SortableTitleCache: " + titleCache);}
|
140
|
// System.out.println(titleCache);
|
141
|
return titleCache;
|
142
|
}
|
143
|
|
144
|
|
145
|
@Override
|
146
|
public boolean isIgnoreHybridSign() {
|
147
|
return ignoreHybridSign;
|
148
|
}
|
149
|
|
150
|
@Override
|
151
|
public void setIgnoreHybridSign(boolean ignore) {
|
152
|
this.ignoreHybridSign = ignore;
|
153
|
}
|
154
|
|
155
|
public boolean isSortInfraGenericFirst() {
|
156
|
return sortInfraGenericFirst;
|
157
|
}
|
158
|
|
159
|
public void setSortInfraGenericFirst(boolean infraGenericFirst) {
|
160
|
this.sortInfraGenericFirst = infraGenericFirst;
|
161
|
}
|
162
|
|
163
|
}
|