|
1
|
/**
|
|
2
|
* Copyright (C) 2007 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
|
|
10
|
package eu.etaxonomy.cdm.model.name;
|
|
11
|
|
|
12
|
import static org.junit.Assert.assertEquals;
|
|
13
|
import static org.junit.Assert.assertFalse;
|
|
14
|
import static org.junit.Assert.assertNotNull;
|
|
15
|
import static org.junit.Assert.assertNotSame;
|
|
16
|
import static org.junit.Assert.assertNull;
|
|
17
|
import static org.junit.Assert.assertSame;
|
|
18
|
import static org.junit.Assert.assertTrue;
|
|
19
|
|
|
20
|
import org.apache.log4j.Logger;
|
|
21
|
import org.junit.Before;
|
|
22
|
import org.junit.BeforeClass;
|
|
23
|
import org.junit.Test;
|
|
24
|
|
|
25
|
import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
|
|
26
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
27
|
import eu.etaxonomy.cdm.model.description.Feature;
|
|
28
|
import eu.etaxonomy.cdm.model.description.TaxonNameDescription;
|
|
29
|
import eu.etaxonomy.cdm.model.description.TextData;
|
|
30
|
import eu.etaxonomy.cdm.model.media.Media;
|
|
31
|
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
|
|
32
|
import eu.etaxonomy.cdm.model.reference.INomenclaturalReference;
|
|
33
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
|
34
|
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
|
|
35
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
36
|
import eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy;
|
|
37
|
|
|
38
|
/**
|
|
39
|
* @author a.mueller
|
|
40
|
* @created 28.06.2008
|
|
41
|
*/
|
|
42
|
public class TaxonNameBaseTest {
|
|
43
|
private static final Logger logger = Logger.getLogger(TaxonNameBaseTest.class);
|
|
44
|
|
|
45
|
private TaxonNameBaseTestClass nameBase1;
|
|
46
|
private TaxonNameBaseTestClass nameBase2;
|
|
47
|
|
|
48
|
@BeforeClass
|
|
49
|
public static void setUpBeforeClass() {
|
|
50
|
DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
|
|
51
|
vocabularyStore.initialize();
|
|
52
|
}
|
|
53
|
|
|
54
|
/**
|
|
55
|
* @throws java.lang.Exception
|
|
56
|
*/
|
|
57
|
@Before
|
|
58
|
public void setUp() throws Exception {
|
|
59
|
nameBase1 = new TaxonNameBaseTestClass(null,null);
|
|
60
|
nameBase2 = new TaxonNameBaseTestClass(Rank.GENUS());
|
|
61
|
}
|
|
62
|
|
|
63
|
|
|
64
|
private class TaxonNameBaseTestClass extends TaxonNameBase<TaxonNameBaseTestClass, INameCacheStrategy<TaxonNameBaseTestClass>>{
|
|
65
|
public TaxonNameBaseTestClass(){super();}
|
|
66
|
public TaxonNameBaseTestClass(Rank rank){super(rank);}
|
|
67
|
public TaxonNameBaseTestClass(HomotypicalGroup hg){super(hg);}
|
|
68
|
public TaxonNameBaseTestClass(Rank rank, HomotypicalGroup hg){super(rank, hg);}
|
|
69
|
@Override
|
|
70
|
public void setCacheStrategy(INameCacheStrategy strategy){}
|
|
71
|
@Override
|
|
72
|
public INameCacheStrategy getCacheStrategy(){return null;}
|
|
73
|
@Override
|
|
74
|
public NomenclaturalCode getNomenclaturalCode(){return null;}
|
|
75
|
@Override
|
|
76
|
public String generateFullTitle(){return null;}
|
|
77
|
@Override
|
|
78
|
public String generateTitle() {
|
|
79
|
return null;
|
|
80
|
}
|
|
81
|
|
|
82
|
}
|
|
83
|
|
|
84
|
|
|
85
|
/** ************************* TESTS ******************************************************/
|
|
86
|
|
|
87
|
|
|
88
|
@Test
|
|
89
|
public void testGenerateFullTitle() {
|
|
90
|
//abstract
|
|
91
|
}
|
|
92
|
|
|
93
|
/**
|
|
94
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#TaxonNameBase()}.
|
|
95
|
*/
|
|
96
|
@Test
|
|
97
|
public void testTaxonNameBase() {
|
|
98
|
assertNotNull(nameBase1);
|
|
99
|
}
|
|
100
|
|
|
101
|
/**
|
|
102
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#TaxonNameBase(eu.etaxonomy.cdm.model.name.Rank)}.
|
|
103
|
*/
|
|
104
|
@Test
|
|
105
|
public void testTaxonNameBaseRank() {
|
|
106
|
assertNotNull(nameBase2);
|
|
107
|
assertEquals(Rank.GENUS(), nameBase2.getRank());
|
|
108
|
Rank rank = null;
|
|
109
|
TaxonNameBase testName = new TaxonNameBaseTestClass(rank);
|
|
110
|
assertNull(testName.getRank());
|
|
111
|
}
|
|
112
|
|
|
113
|
/**
|
|
114
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#TaxonNameBase(eu.etaxonomy.cdm.model.name.HomotypicalGroup)}.
|
|
115
|
*/
|
|
116
|
@Test
|
|
117
|
public void testTaxonNameBaseHomotypicalGroup() {
|
|
118
|
HomotypicalGroup hg = HomotypicalGroup.NewInstance();
|
|
119
|
TaxonNameBase testHG = new TaxonNameBaseTestClass(hg);
|
|
120
|
assertSame(hg, testHG.getHomotypicalGroup());
|
|
121
|
HomotypicalGroup hgNull = null;
|
|
122
|
TaxonNameBase testHGNull = new TaxonNameBaseTestClass(hgNull);
|
|
123
|
assertNotNull(testHGNull.getHomotypicalGroup());
|
|
124
|
}
|
|
125
|
|
|
126
|
/**
|
|
127
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#TaxonNameBase(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.name.HomotypicalGroup)}.
|
|
128
|
*/
|
|
129
|
@Test
|
|
130
|
public void testTaxonNameBaseRankHomotypicalGroup() {
|
|
131
|
Rank rank = Rank.SPECIES();
|
|
132
|
HomotypicalGroup hg = HomotypicalGroup.NewInstance();
|
|
133
|
TaxonNameBase testHG = new TaxonNameBaseTestClass(rank, hg);
|
|
134
|
assertSame(rank, testHG.getRank());
|
|
135
|
assertSame(hg, testHG.getHomotypicalGroup());
|
|
136
|
|
|
137
|
Rank rankNull = null;
|
|
138
|
HomotypicalGroup hgNull = null;
|
|
139
|
TaxonNameBase testHGNull = new TaxonNameBaseTestClass(rankNull, hgNull);
|
|
140
|
assertEquals(rankNull, testHGNull.getRank());
|
|
141
|
assertNotNull(testHGNull.getHomotypicalGroup());
|
|
142
|
}
|
|
143
|
|
|
144
|
/**
|
|
145
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isCodeCompliant()}.
|
|
146
|
*/
|
|
147
|
@Test
|
|
148
|
public void testIsCodeCompliant() {
|
|
149
|
//is abstract
|
|
150
|
}
|
|
151
|
|
|
152
|
/**
|
|
153
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getNameRelations()}.
|
|
154
|
*/
|
|
155
|
@Test
|
|
156
|
public void testGetNameRelations() {
|
|
157
|
logger.warn("not yet implemented");
|
|
158
|
}
|
|
159
|
|
|
160
|
/**
|
|
161
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addRelationshipToName(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.String)}.
|
|
162
|
*/
|
|
163
|
@Test
|
|
164
|
public void testAddRelationshipToName() {
|
|
165
|
logger.warn("not yet implemented");
|
|
166
|
}
|
|
167
|
|
|
168
|
/**
|
|
169
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addRelationshipFromName(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.String)}.
|
|
170
|
*/
|
|
171
|
@Test
|
|
172
|
public void testAddRelationshipFromName() {
|
|
173
|
logger.warn("not yet implemented");
|
|
174
|
}
|
|
175
|
|
|
176
|
/**
|
|
177
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addNameRelationship(eu.etaxonomy.cdm.model.name.NameRelationship)}.
|
|
178
|
*/
|
|
179
|
@Test
|
|
180
|
public void testAddNameRelationship() {
|
|
181
|
logger.warn("not yet implemented");
|
|
182
|
}
|
|
183
|
|
|
184
|
/**
|
|
185
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#removeNameRelationship(eu.etaxonomy.cdm.model.name.NameRelationship)}.
|
|
186
|
*/
|
|
187
|
@Test
|
|
188
|
public void testRemoveNameRelationship() {
|
|
189
|
logger.warn("not yet implemented");
|
|
190
|
}
|
|
191
|
|
|
192
|
/**
|
|
193
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addRelationship(eu.etaxonomy.cdm.model.common.RelationshipBase)}.
|
|
194
|
*/
|
|
195
|
@Test
|
|
196
|
public void testAddRelationship() {
|
|
197
|
logger.warn("not yet implemented");
|
|
198
|
}
|
|
199
|
|
|
200
|
/**
|
|
201
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getRelationsFromThisName()}.
|
|
202
|
*/
|
|
203
|
@Test
|
|
204
|
public void testGetRelationsFromThisName() {
|
|
205
|
logger.warn("not yet implemented");
|
|
206
|
}
|
|
207
|
|
|
208
|
/**
|
|
209
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getRelationsToThisName()}.
|
|
210
|
*/
|
|
211
|
@Test
|
|
212
|
public void testGetRelationsToThisName() {
|
|
213
|
logger.warn("not yet implemented");
|
|
214
|
}
|
|
215
|
|
|
216
|
/**
|
|
217
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getStatus()}.
|
|
218
|
* and for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addStatus(eu.etaxonomy.cdm.model.name.NomenclaturalStatus)}.
|
|
219
|
* and for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#removeStatus(eu.etaxonomy.cdm.model.name.NomenclaturalStatus)}.
|
|
220
|
*/
|
|
221
|
@Test
|
|
222
|
public void testGetAddStatus() {
|
|
223
|
//Empty status set
|
|
224
|
assertNotNull(nameBase1.getStatus());
|
|
225
|
assertEquals(0, nameBase1.getStatus().size());
|
|
226
|
//1 status set
|
|
227
|
NomenclaturalStatus nomStatus = NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ALTERNATIVE());
|
|
228
|
nameBase1.addStatus(nomStatus);
|
|
229
|
assertNotNull(nameBase1.getStatus());
|
|
230
|
assertEquals(1, nameBase1.getStatus().size());
|
|
231
|
assertEquals(nomStatus, nameBase1.getStatus().iterator().next());
|
|
232
|
//2 status set
|
|
233
|
NomenclaturalStatus nomStatus2 = NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ALTERNATIVE());
|
|
234
|
nameBase1.addStatus(nomStatus2);
|
|
235
|
assertEquals(2, nameBase1.getStatus().size());
|
|
236
|
assertTrue(nameBase1.getStatus().contains(nomStatus2));
|
|
237
|
//remove
|
|
238
|
nameBase1.removeStatus(nomStatus);
|
|
239
|
assertEquals(1, nameBase1.getStatus().size());
|
|
240
|
assertTrue(nameBase1.getStatus().contains(nomStatus2));
|
|
241
|
//remove
|
|
242
|
nameBase1.removeStatus(nomStatus2);
|
|
243
|
assertEquals(0, nameBase1.getStatus().size());
|
|
244
|
assertFalse(nameBase1.getStatus().contains(nomStatus2));
|
|
245
|
|
|
246
|
|
|
247
|
}
|
|
248
|
|
|
249
|
/**
|
|
250
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isOriginalCombination()}.
|
|
251
|
*/
|
|
252
|
@Test
|
|
253
|
public void testIsOriginalCombination() {
|
|
254
|
logger.warn("not yet implemented");
|
|
255
|
}
|
|
256
|
|
|
257
|
/**
|
|
258
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getBasionym()}.
|
|
259
|
*/
|
|
260
|
@Test
|
|
261
|
public void testGetBasionym() {
|
|
262
|
TaxonNameBase name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
263
|
TaxonNameBase basionym1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
264
|
TaxonNameBase basionym2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
265
|
|
|
266
|
assertEquals(null, name1.getBasionym());
|
|
267
|
name1.addBasionym(basionym1);
|
|
268
|
assertEquals(basionym1, name1.getBasionym());
|
|
269
|
name1.addBasionym(basionym2);
|
|
270
|
TaxonNameBase oneOfThebasionyms = name1.getBasionym();
|
|
271
|
assertTrue(oneOfThebasionyms == basionym1 || oneOfThebasionyms == basionym2 );
|
|
272
|
name1.removeBasionyms();
|
|
273
|
assertEquals(null, name1.getBasionym());
|
|
274
|
}
|
|
275
|
|
|
276
|
/**
|
|
277
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addBasionym(eu.etaxonomy.cdm.model.name.TaxonNameBase)}.
|
|
278
|
*/
|
|
279
|
@Test
|
|
280
|
public void testAddBasionymT() {
|
|
281
|
assertNotSame(nameBase1.getHomotypicalGroup(), nameBase2.getHomotypicalGroup());
|
|
282
|
assertFalse(nameBase1.getHomotypicalGroup().equals(nameBase2.getHomotypicalGroup()));
|
|
283
|
nameBase1.addBasionym(nameBase2);
|
|
284
|
assertTrue(nameBase1.getHomotypicalGroup().equals(nameBase2.getHomotypicalGroup()));
|
|
285
|
assertSame(nameBase1.getHomotypicalGroup(), nameBase2.getHomotypicalGroup());
|
|
286
|
logger.warn("not yet fully implemented");
|
|
287
|
}
|
|
288
|
|
|
289
|
/**
|
|
290
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addBasionym(eu.etaxonomy.cdm.model.name.TaxonNameBase, java.lang.String)}.
|
|
291
|
*/
|
|
292
|
@Test
|
|
293
|
public void testAddBasionymTString() {
|
|
294
|
logger.warn("not yet implemented");
|
|
295
|
}
|
|
296
|
|
|
297
|
|
|
298
|
/**
|
|
299
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getCacheStrategy()}.
|
|
300
|
*/
|
|
301
|
@Test
|
|
302
|
public void testGetCacheStrategy() {
|
|
303
|
//is abstract
|
|
304
|
}
|
|
305
|
|
|
306
|
/**
|
|
307
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#setCacheStrategy(eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy)}.
|
|
308
|
*/
|
|
309
|
@Test
|
|
310
|
public void testSetCacheStrategy() {
|
|
311
|
logger.warn("not yet implemented");
|
|
312
|
}
|
|
313
|
|
|
314
|
/**
|
|
315
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getRank()}.
|
|
316
|
*/
|
|
317
|
@Test
|
|
318
|
public void testGetRank() {
|
|
319
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
320
|
assertNull("Rank shall be null", name1.getRank());
|
|
321
|
name1.setRank(Rank.SPECIES());
|
|
322
|
assertNotNull("Rank shall not be null", name1.getRank());
|
|
323
|
name1.setRank(null);
|
|
324
|
assertNull("Rank shall be null", name1.getRank());
|
|
325
|
|
|
326
|
}
|
|
327
|
|
|
328
|
/**
|
|
329
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getNomenclaturalReference()}.
|
|
330
|
*/
|
|
331
|
@Test
|
|
332
|
public void testGetSetNomenclaturalReference() {
|
|
333
|
INomenclaturalReference nr = nameBase1.getNomenclaturalReference();
|
|
334
|
assertNull("Nomenclatural Reference shall be null", nr);
|
|
335
|
nameBase1.setNomenclaturalReference(ReferenceFactory.newGeneric());
|
|
336
|
nr = nameBase1.getNomenclaturalReference();
|
|
337
|
assertNotNull("Nomenclatural Reference shall not be null", nr);
|
|
338
|
}
|
|
339
|
|
|
340
|
/**
|
|
341
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getAppendedPhrase()}.
|
|
342
|
*/
|
|
343
|
@Test
|
|
344
|
public void testGetAppendedPhrase() {
|
|
345
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
346
|
String appPhrase = "appPhrase";
|
|
347
|
assertNull(name1.getAppendedPhrase());
|
|
348
|
name1.setAppendedPhrase(appPhrase);
|
|
349
|
assertSame(appPhrase, name1.getAppendedPhrase());
|
|
350
|
name1.setAppendedPhrase(null);
|
|
351
|
assertNull(name1.getAppendedPhrase());
|
|
352
|
}
|
|
353
|
|
|
354
|
/**
|
|
355
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getNomenclaturalMicroReference()}.
|
|
356
|
*/
|
|
357
|
@Test
|
|
358
|
public void testGetSetNomenclaturalMicroReference() {
|
|
359
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
360
|
String microRef = "micro";
|
|
361
|
assertNull(name1.getNomenclaturalMicroReference());
|
|
362
|
name1.setNomenclaturalMicroReference(microRef);
|
|
363
|
assertSame(microRef, name1.getNomenclaturalMicroReference());
|
|
364
|
name1.setNomenclaturalMicroReference(null);
|
|
365
|
assertNull(name1.getNomenclaturalMicroReference());
|
|
366
|
}
|
|
367
|
|
|
368
|
/**
|
|
369
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getHasProblem()}.
|
|
370
|
*/
|
|
371
|
@Test
|
|
372
|
public void testGetSetHasProblem() {
|
|
373
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
374
|
name1.setParsingProblem(0);
|
|
375
|
assertFalse(name1.hasProblem());
|
|
376
|
name1.setParsingProblem(1);
|
|
377
|
assertTrue(name1.hasProblem());
|
|
378
|
name1.setParsingProblem(0);
|
|
379
|
assertFalse(name1.getParsingProblem()!=0);
|
|
380
|
}
|
|
381
|
|
|
382
|
/**
|
|
383
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getNameTypeDesignations()}.
|
|
384
|
*/
|
|
385
|
@Test
|
|
386
|
public void testGetNameTypeDesignations() {
|
|
387
|
logger.warn("not yet implemented");
|
|
388
|
}
|
|
389
|
|
|
390
|
/**
|
|
391
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#setNameTypeDesignations(java.util.Set)}.
|
|
392
|
*/
|
|
393
|
@Test
|
|
394
|
public void testSetNameTypeDesignations() {
|
|
395
|
logger.warn("not yet implemented");
|
|
396
|
}
|
|
397
|
|
|
398
|
/**
|
|
399
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addNameTypeDesignation(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, java.lang.String, boolean, boolean)}.
|
|
400
|
*/
|
|
401
|
@Test
|
|
402
|
public void testAddNameTypeDesignation() {
|
|
403
|
logger.warn("not yet implemented");
|
|
404
|
}
|
|
405
|
|
|
406
|
/**
|
|
407
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#removeNameTypeDesignation(eu.etaxonomy.cdm.model.name.NameTypeDesignation)}.
|
|
408
|
*/
|
|
409
|
@Test
|
|
410
|
public void testRemoveNameTypeDesignation() {
|
|
411
|
logger.warn("not yet implemented");
|
|
412
|
}
|
|
413
|
|
|
414
|
/**
|
|
415
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getSpecimenTypeDesignations()}.
|
|
416
|
*/
|
|
417
|
@Test
|
|
418
|
public void testGetSpecimenTypeDesignations() {
|
|
419
|
logger.warn("not yet implemented");
|
|
420
|
}
|
|
421
|
|
|
422
|
/**
|
|
423
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#setSpecimenTypeDesignations(java.util.Set)}.
|
|
424
|
*/
|
|
425
|
@Test
|
|
426
|
public void testSetSpecimenTypeDesignations() {
|
|
427
|
logger.warn("not yet implemented");
|
|
428
|
}
|
|
429
|
|
|
430
|
/**
|
|
431
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getSpecimenTypeDesignationsOfHomotypicalGroup()}.
|
|
432
|
*/
|
|
433
|
@Test
|
|
434
|
public void testGetSpecimenTypeDesignationsOfHomotypicalGroup() {
|
|
435
|
logger.warn("not yet implemented");
|
|
436
|
}
|
|
437
|
|
|
438
|
/**
|
|
439
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addSpecimenTypeDesignation(eu.etaxonomy.cdm.model.occurrence.Specimen, eu.etaxonomy.cdm.model.name.TypeDesignationStatus, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, java.lang.String, boolean)}.
|
|
440
|
*/
|
|
441
|
@Test
|
|
442
|
public void testAddSpecimenTypeDesignationSpecimenTypeDesignationStatusReferenceBaseStringStringBoolean() {
|
|
443
|
logger.warn("not yet implemented");
|
|
444
|
}
|
|
445
|
|
|
446
|
/**
|
|
447
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addSpecimenTypeDesignation(eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation)}.
|
|
448
|
*/
|
|
449
|
@Test
|
|
450
|
public void testAddSpecimenTypeDesignationSpecimenTypeDesignation() {
|
|
451
|
logger.warn("not yet implemented");
|
|
452
|
}
|
|
453
|
|
|
454
|
/**
|
|
455
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#removeSpecimenTypeDesignation(eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation)}.
|
|
456
|
*/
|
|
457
|
@Test
|
|
458
|
public void testRemoveSpecimenTypeDesignation() {
|
|
459
|
logger.warn("not yet implemented");
|
|
460
|
}
|
|
461
|
|
|
462
|
/**
|
|
463
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#removeTypeDesignation(eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation)}.
|
|
464
|
*/
|
|
465
|
@Test
|
|
466
|
public void testRemoveTypeDesignation() {
|
|
467
|
logger.warn("not yet implemented");
|
|
468
|
}
|
|
469
|
|
|
470
|
/**
|
|
471
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getHomotypicalGroup()}.
|
|
472
|
*/
|
|
473
|
@Test
|
|
474
|
public void testGetHomotypicalGroup() {
|
|
475
|
logger.warn("not yet implemented");
|
|
476
|
}
|
|
477
|
|
|
478
|
/**
|
|
479
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#setHomotypicalGroup(eu.etaxonomy.cdm.model.name.HomotypicalGroup)}.
|
|
480
|
*/
|
|
481
|
@Test
|
|
482
|
public void testSetHomotypicalGroup() {
|
|
483
|
logger.warn("not yet implemented");
|
|
484
|
}
|
|
485
|
|
|
486
|
/**
|
|
487
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getCitation()}.
|
|
488
|
*/
|
|
489
|
@Test
|
|
490
|
public void testGetCitation() {
|
|
491
|
logger.warn("not yet implemented");
|
|
492
|
}
|
|
493
|
|
|
494
|
/**
|
|
495
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getCitationString()}.
|
|
496
|
*/
|
|
497
|
@Test
|
|
498
|
public void testGetCitationString() {
|
|
499
|
logger.warn("not yet implemented");
|
|
500
|
}
|
|
501
|
|
|
502
|
/**
|
|
503
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getReferenceYear()}.
|
|
504
|
*/
|
|
505
|
@Test
|
|
506
|
public void testGetReferenceYear() {
|
|
507
|
logger.warn("not yet implemented");
|
|
508
|
}
|
|
509
|
|
|
510
|
/**
|
|
511
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#addTaxonBase(eu.etaxonomy.cdm.model.taxon.TaxonBase)}.
|
|
512
|
*/
|
|
513
|
@Test
|
|
514
|
public void testAddTaxonBase() {
|
|
515
|
Taxon taxon = Taxon.NewInstance(null, null);
|
|
516
|
nameBase2.addTaxonBase(taxon); //test if reflection method addTaxonBase() works
|
|
517
|
assertTrue("The taxon has not properly been added to the taxonName", nameBase2.getTaxonBases().contains(taxon));
|
|
518
|
assertEquals("The taxon name has not properly been added to the taxon", nameBase2, taxon.getName());
|
|
519
|
nameBase2.removeTaxonBase(taxon); //test if reflection method in removeTaxonBase() works
|
|
520
|
assertFalse("The taxon has not properly been removed from the taxon name", nameBase2.getTaxonBases().contains(taxon));
|
|
521
|
assertEquals("The taxon name has not properly been removed from the taxon", null, taxon.getName());
|
|
522
|
}
|
|
523
|
|
|
524
|
|
|
525
|
@Test
|
|
526
|
public void testAddAndRemoveDescriptionTaxonNameDescription() {
|
|
527
|
TaxonNameDescription description = TaxonNameDescription.NewInstance();
|
|
528
|
nameBase2.addDescription(description); //test if reflection method in addDescription() works
|
|
529
|
assertTrue("The description has not properly been added to the taxonName", nameBase2.getDescriptions().contains(description));
|
|
530
|
assertEquals("The taxon name has not properly been added to the description", nameBase2, description.getTaxonName());
|
|
531
|
nameBase2.removeDescription(description); //test if reflection method in removeDescription() works
|
|
532
|
assertFalse("The description has not properly been removed from the taxon name", nameBase2.getDescriptions().contains(description));
|
|
533
|
assertEquals("The taxon name has not properly been removed from the description", null, description.getTaxonName());
|
|
534
|
}
|
|
535
|
|
|
536
|
/**
|
|
537
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getTaxa()}.
|
|
538
|
*/
|
|
539
|
@Test
|
|
540
|
public void testGetTaxa() {
|
|
541
|
logger.warn("not yet implemented");
|
|
542
|
}
|
|
543
|
|
|
544
|
/**
|
|
545
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getSynonyms()}.
|
|
546
|
*/
|
|
547
|
@Test
|
|
548
|
public void testGetSynonyms() {
|
|
549
|
logger.warn("not yet implemented");
|
|
550
|
}
|
|
551
|
|
|
552
|
@Test
|
|
553
|
public void testMergeHomotypicGroups() {
|
|
554
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
555
|
TaxonNameBase<?,?> name2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
556
|
TaxonNameBase<?,?> name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
557
|
TaxonNameBase<?,?> name4 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
558
|
|
|
559
|
assertFalse(name1.getHomotypicalGroup().equals(name2.getHomotypicalGroup()));
|
|
560
|
int numberOfTypifiedNames = name1.getHomotypicalGroup().getTypifiedNames().size();
|
|
561
|
assertEquals(1, numberOfTypifiedNames);
|
|
562
|
|
|
563
|
name1.mergeHomotypicGroups(name2);
|
|
564
|
assertEquals(name1.getHomotypicalGroup(), name2.getHomotypicalGroup());
|
|
565
|
assertSame(name1.getHomotypicalGroup(), name2.getHomotypicalGroup());
|
|
566
|
numberOfTypifiedNames = name1.getHomotypicalGroup().getTypifiedNames().size();
|
|
567
|
assertEquals(2, numberOfTypifiedNames);
|
|
568
|
numberOfTypifiedNames = name2.getHomotypicalGroup().getTypifiedNames().size();
|
|
569
|
assertEquals(2, numberOfTypifiedNames);
|
|
570
|
assertTrue(name1.getHomotypicalGroup().getTypifiedNames().contains(name2));
|
|
571
|
assertTrue(name2.getHomotypicalGroup().getTypifiedNames().contains(name1));
|
|
572
|
|
|
573
|
name3.mergeHomotypicGroups(name2);
|
|
574
|
assertEquals(name1.getHomotypicalGroup(), name3.getHomotypicalGroup());
|
|
575
|
assertSame(name1.getHomotypicalGroup(), name3.getHomotypicalGroup());
|
|
576
|
numberOfTypifiedNames = name1.getHomotypicalGroup().getTypifiedNames().size();
|
|
577
|
assertEquals(3, numberOfTypifiedNames);
|
|
578
|
numberOfTypifiedNames = name2.getHomotypicalGroup().getTypifiedNames().size();
|
|
579
|
assertEquals(3, numberOfTypifiedNames);
|
|
580
|
numberOfTypifiedNames = name3.getHomotypicalGroup().getTypifiedNames().size();
|
|
581
|
assertEquals(3, numberOfTypifiedNames);
|
|
582
|
assertTrue(name1.getHomotypicalGroup().getTypifiedNames().contains(name2));
|
|
583
|
assertTrue(name2.getHomotypicalGroup().getTypifiedNames().contains(name1));
|
|
584
|
assertTrue(name1.getHomotypicalGroup().getTypifiedNames().contains(name3));
|
|
585
|
assertTrue(name3.getHomotypicalGroup().getTypifiedNames().contains(name1));
|
|
586
|
assertTrue(name2.getHomotypicalGroup().getTypifiedNames().contains(name3));
|
|
587
|
assertTrue(name3.getHomotypicalGroup().getTypifiedNames().contains(name2));
|
|
588
|
|
|
589
|
|
|
590
|
}
|
|
591
|
|
|
592
|
|
|
593
|
@Test
|
|
594
|
public void testIsBasionymFor() {
|
|
595
|
TaxonNameBase name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
596
|
TaxonNameBase name2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
597
|
TaxonNameBase<?,?> name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
598
|
TaxonNameBase<?,?> name4 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
599
|
|
|
600
|
assertFalse(name2.isBasionymFor(name1));
|
|
601
|
assertFalse(name1.isBasionymFor(name2));
|
|
602
|
name1.addBasionym(name2);
|
|
603
|
assertTrue(name2.isBasionymFor(name1));
|
|
604
|
assertFalse(name1.isBasionymFor(name2));
|
|
605
|
}
|
|
606
|
|
|
607
|
/**
|
|
608
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isHomotypic(eu.etaxonomy.cdm.model.name.TaxonNameBase)}.
|
|
609
|
*/
|
|
610
|
@Test
|
|
611
|
public void testIsHomotypic() {
|
|
612
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
613
|
TaxonNameBase<?,?> name2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
614
|
TaxonNameBase<?,?> name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
615
|
TaxonNameBase<?,?> name4 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
616
|
name1.mergeHomotypicGroups(name2);
|
|
617
|
name2.mergeHomotypicGroups(name4);
|
|
618
|
|
|
619
|
assertTrue(name1.isHomotypic(name4));
|
|
620
|
assertTrue(name4.isHomotypic(name1));
|
|
621
|
assertFalse(name1.isHomotypic(name3));
|
|
622
|
assertFalse(name3.isHomotypic(name1));
|
|
623
|
assertTrue(name2.isHomotypic(name1));
|
|
624
|
|
|
625
|
}
|
|
626
|
|
|
627
|
@Test
|
|
628
|
public void testMakeGroupsBasionym(){
|
|
629
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
630
|
TaxonNameBase<?,?> name2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
631
|
TaxonNameBase<?,?> name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
632
|
TaxonNameBase<?,?> name4 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
633
|
|
|
634
|
name1.mergeHomotypicGroups(name2);
|
|
635
|
name1.mergeHomotypicGroups(name3);
|
|
636
|
name2.mergeHomotypicGroups(name4);
|
|
637
|
|
|
638
|
name1.makeGroupsBasionym();
|
|
639
|
|
|
640
|
assertEquals(1, name2.getBasionyms().size());
|
|
641
|
assertEquals(1, name3.getBasionyms().size());
|
|
642
|
assertEquals(1, name4.getBasionyms().size());
|
|
643
|
assertEquals(name1, name4.getBasionym());
|
|
644
|
|
|
645
|
}
|
|
646
|
|
|
647
|
@Test
|
|
648
|
public void testIsGroupsBasionym(){
|
|
649
|
TaxonNameBase<?,?> name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
650
|
TaxonNameBase<?,?> name2 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
651
|
TaxonNameBase<?,?> name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
652
|
TaxonNameBase<?,?> name4 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
653
|
|
|
654
|
assertFalse(name1.isGroupsBasionym());
|
|
655
|
|
|
656
|
name1.mergeHomotypicGroups(name2);
|
|
657
|
name2.mergeHomotypicGroups(name4);
|
|
658
|
|
|
659
|
name1.makeGroupsBasionym();
|
|
660
|
|
|
661
|
assertTrue(name1.isGroupsBasionym());
|
|
662
|
assertFalse(name2.isGroupsBasionym());
|
|
663
|
name1.mergeHomotypicGroups(name3);
|
|
664
|
assertFalse(name1.isGroupsBasionym());
|
|
665
|
}
|
|
666
|
|
|
667
|
|
|
668
|
|
|
669
|
@Test
|
|
670
|
public void testRemoveBasionyms(){
|
|
671
|
TaxonNameBase name1 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
672
|
TaxonNameBase basionym = TaxonNameFactory.NewBotanicalInstance(null);
|
|
673
|
TaxonNameBase name3 = TaxonNameFactory.NewBotanicalInstance(null);
|
|
674
|
|
|
675
|
name1.addBasionym(basionym);
|
|
676
|
assertEquals(1, name1.getBasionyms().size());
|
|
677
|
name1.addBasionym(name3);
|
|
678
|
assertEquals(2, name1.getBasionyms().size());
|
|
679
|
name1.removeBasionyms();
|
|
680
|
assertEquals(0, name1.getBasionyms().size());
|
|
681
|
}
|
|
682
|
|
|
683
|
/**
|
|
684
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isSupraGeneric()}.
|
|
685
|
*/
|
|
686
|
@Test
|
|
687
|
public void testIsSupraGeneric() {
|
|
688
|
nameBase1.setRank(Rank.FAMILY());
|
|
689
|
assertTrue(nameBase1.isSupraGeneric());
|
|
690
|
nameBase1.setRank(Rank.GENUS());
|
|
691
|
assertFalse(nameBase1.isSupraGeneric());
|
|
692
|
nameBase1.setRank(Rank.FORM());
|
|
693
|
assertFalse(nameBase1.isSupraGeneric());
|
|
694
|
nameBase1.setRank(null);
|
|
695
|
assertFalse(nameBase1.isSupraGeneric());
|
|
696
|
}
|
|
697
|
|
|
698
|
@Test
|
|
699
|
public void testRemoveTaxonBases(){
|
|
700
|
|
|
701
|
Taxon newTaxon = Taxon.NewInstance(nameBase1, null);
|
|
702
|
assertEquals(1, nameBase1.getTaxonBases().size());
|
|
703
|
|
|
704
|
|
|
705
|
nameBase1.removeTaxonBase(newTaxon);
|
|
706
|
assertEquals(0, nameBase1.getTaxonBases().size());
|
|
707
|
|
|
708
|
}
|
|
709
|
/**
|
|
710
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isGenus()}.
|
|
711
|
*/
|
|
712
|
@Test
|
|
713
|
public void testIsGenus() {
|
|
714
|
nameBase1.setRank(Rank.FAMILY());
|
|
715
|
assertFalse(nameBase1.isGenus());
|
|
716
|
nameBase1.setRank(Rank.GENUS());
|
|
717
|
assertTrue(nameBase1.isGenus());
|
|
718
|
nameBase1.setRank(Rank.FORM());
|
|
719
|
assertFalse(nameBase1.isGenus());
|
|
720
|
nameBase1.setRank(null);
|
|
721
|
assertFalse(nameBase1.isGenus());
|
|
722
|
}
|
|
723
|
|
|
724
|
/**
|
|
725
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isInfraGeneric()}.
|
|
726
|
*/
|
|
727
|
@Test
|
|
728
|
public void testIsInfraGeneric() {
|
|
729
|
nameBase1.setRank(Rank.FAMILY());
|
|
730
|
assertFalse(nameBase1.isInfraGeneric());
|
|
731
|
nameBase1.setRank(Rank.GENUS());
|
|
732
|
assertFalse(nameBase1.isInfraGeneric());
|
|
733
|
nameBase1.setRank(Rank.SUBGENUS());
|
|
734
|
assertTrue(nameBase1.isInfraGeneric());
|
|
735
|
nameBase1.setRank(Rank.SPECIES());
|
|
736
|
assertFalse(nameBase1.isInfraGeneric());
|
|
737
|
nameBase1.setRank(Rank.FORM());
|
|
738
|
assertFalse(nameBase1.isInfraGeneric());
|
|
739
|
nameBase1.setRank(Rank.INFRAGENERICTAXON());
|
|
740
|
assertTrue(nameBase1.isInfraGeneric());
|
|
741
|
nameBase1.setRank(null);
|
|
742
|
assertFalse(nameBase1.isInfraGeneric());
|
|
743
|
}
|
|
744
|
|
|
745
|
/**
|
|
746
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isSpecies()}.
|
|
747
|
*/
|
|
748
|
@Test
|
|
749
|
public void testIsSpecies() {
|
|
750
|
nameBase1.setRank(Rank.FAMILY());
|
|
751
|
assertFalse(nameBase1.isSpecies());
|
|
752
|
nameBase1.setRank(Rank.GENUS());
|
|
753
|
assertFalse(nameBase1.isSpecies());
|
|
754
|
nameBase1.setRank(Rank.SUBGENUS());
|
|
755
|
assertFalse(nameBase1.isSpecies());
|
|
756
|
nameBase1.setRank(Rank.SPECIES());
|
|
757
|
assertTrue(nameBase1.isSpecies());
|
|
758
|
nameBase1.setRank(Rank.FORM());
|
|
759
|
assertFalse(nameBase1.isSpecies());
|
|
760
|
nameBase1.setRank(null);
|
|
761
|
assertFalse(nameBase1.isSpecies());
|
|
762
|
}
|
|
763
|
|
|
764
|
/**
|
|
765
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#isInfraSpecific()}.
|
|
766
|
*/
|
|
767
|
@Test
|
|
768
|
public void testIsInfraSpecific() {
|
|
769
|
nameBase1.setRank(Rank.FAMILY());
|
|
770
|
assertFalse(nameBase1.isInfraSpecific());
|
|
771
|
nameBase1.setRank(Rank.GENUS());
|
|
772
|
assertFalse(nameBase1.isInfraSpecific());
|
|
773
|
nameBase1.setRank(Rank.SUBGENUS());
|
|
774
|
assertFalse(nameBase1.isInfraSpecific());
|
|
775
|
nameBase1.setRank(Rank.SPECIES());
|
|
776
|
assertFalse(nameBase1.isInfraSpecific());
|
|
777
|
nameBase1.setRank(Rank.FORM());
|
|
778
|
assertTrue(nameBase1.isInfraSpecific());
|
|
779
|
nameBase1.setRank(Rank.INFRASPECIFICTAXON());
|
|
780
|
assertTrue(nameBase1.isInfraSpecific());
|
|
781
|
nameBase1.setRank(null);
|
|
782
|
assertFalse(nameBase1.isInfraSpecific());
|
|
783
|
}
|
|
784
|
|
|
785
|
/**
|
|
786
|
* Test method for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase#getNomenclaturalCode()}.
|
|
787
|
*/
|
|
788
|
@Test
|
|
789
|
public void testGetNomenclaturalCode() {
|
|
790
|
//is abstract
|
|
791
|
}
|
|
792
|
|
|
793
|
|
|
794
|
//descriptions, fullTitleCache, homotypicalGroup,
|
|
795
|
|
|
796
|
//no changes to: appendedPharse, nomenclaturalReference,
|
|
797
|
//nomenclaturalMicroReference, parsingProblem, problemEnds, problemStarts
|
|
798
|
//protectedFullTitleCache
|
|
799
|
|
|
800
|
@Test
|
|
801
|
public void testClone(){
|
|
802
|
TaxonNameBase<?,?> taxonNameBase1 = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
|
|
803
|
TaxonNameBase<?,?> genusName = TaxonNameFactory.NewNonViralInstance(Rank.GENUS());
|
|
804
|
Taxon.NewInstance(taxonNameBase1, null);
|
|
805
|
|
|
806
|
//basionym & homonym
|
|
807
|
TaxonNameBase<?,?> basionym = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
|
|
808
|
TaxonNameBase<?,?> earlierHomonym = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
|
|
809
|
taxonNameBase1.addBasionym(basionym);
|
|
810
|
taxonNameBase1.addRelationshipToName(earlierHomonym, NameRelationshipType.LATER_HOMONYM(), "later homonym rule");
|
|
811
|
//status
|
|
812
|
Reference statusReference = ReferenceFactory.newArticle();
|
|
813
|
NomenclaturalStatus nomStatus = NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONSERVED(), statusReference, "55");
|
|
814
|
taxonNameBase1.addStatus(nomStatus);
|
|
815
|
//typeDesignation
|
|
816
|
DerivedUnit typeSpecimen = DerivedUnit.NewPreservedSpecimenInstance();
|
|
817
|
Reference specimenTypeCitation = ReferenceFactory.newArticle();
|
|
818
|
Reference nameTypeCitation = ReferenceFactory.newArticle();
|
|
819
|
SpecimenTypeDesignation specimenTypeDesignationOriginal = taxonNameBase1.addSpecimenTypeDesignation(typeSpecimen, SpecimenTypeDesignationStatus.HOLOTYPE(), specimenTypeCitation, null, null, false, false);
|
|
820
|
NameTypeDesignation nameTypeDesignationOriginal = genusName.addNameTypeDesignation(taxonNameBase1, nameTypeCitation, null, null, NameTypeDesignationStatus.LECTOTYPE(), true, false, false, false);
|
|
821
|
|
|
822
|
//description
|
|
823
|
TaxonNameDescription description = TaxonNameDescription.NewInstance(taxonNameBase1);
|
|
824
|
TextData textData = TextData.NewInstance(Feature.IMAGE());
|
|
825
|
textData.putText(Language.DEFAULT(), "My media text data");
|
|
826
|
Media media = Media.NewInstance();
|
|
827
|
textData.addMedia(media);
|
|
828
|
description.addElement(textData);
|
|
829
|
|
|
830
|
//CLONE
|
|
831
|
TaxonNameBase<?,?> clone = (TaxonNameBase<?,?>)taxonNameBase1.clone();
|
|
832
|
TaxonNameBase<?,?> genusClone = (TaxonNameBase<?,?>)genusName.clone();
|
|
833
|
assertSame("Rank should be same", taxonNameBase1.getRank(), clone.getRank());
|
|
834
|
assertTrue("TaxonBases should not be cloned", clone.getTaxonBases().isEmpty());
|
|
835
|
assertEquals("TaxonBases of original name should not be empty", 1, taxonNameBase1.getTaxonBases().size());
|
|
836
|
//Homotypical group - CAUTION: behaviour may be changed in future
|
|
837
|
//TODO still needs to be discussed
|
|
838
|
// assertSame("The clone must have the same homotypical group as the original", taxonNameBase1.getHomotypicalGroup(), clone.getHomotypicalGroup());
|
|
839
|
// assertSame("The genusClone must have the same homotypical group as the original genus", genusName.getHomotypicalGroup(), genusClone.getHomotypicalGroup());
|
|
840
|
|
|
841
|
//description
|
|
842
|
assertEquals("There should be exactly 1 name description", 1, clone.getDescriptions().size());
|
|
843
|
TaxonNameDescription descriptionClone = clone.getDescriptions().iterator().next();
|
|
844
|
assertEquals("There should be exactly 1 description element", 1, descriptionClone.getElements().size());
|
|
845
|
TextData textDataClone = (TextData)descriptionClone.getElements().iterator().next();
|
|
846
|
String text = textDataClone.getText(Language.DEFAULT());
|
|
847
|
assertEquals("Textdata should be equal", "My media text data", text);
|
|
848
|
assertEquals("There should be exactly 1 media attached", 1, textDataClone.getMedia().size());
|
|
849
|
Media mediaClone = textDataClone.getMedia().get(0);
|
|
850
|
assertSame("Media must be the same", media, mediaClone);
|
|
851
|
|
|
852
|
//type designation
|
|
853
|
assertEquals("There should be exactly 1 specimen type designation", 1, clone.getTypeDesignations().size());
|
|
854
|
assertNotSame("type designation sets should not be the same", taxonNameBase1.getTypeDesignations(), clone.getTypeDesignations());
|
|
855
|
SpecimenTypeDesignation specimenTypeDesignationClone = (SpecimenTypeDesignation)clone.getTypeDesignations().iterator().next();
|
|
856
|
assertNotSame("The specimen type designation should not be the same", specimenTypeDesignationOriginal, specimenTypeDesignationClone);
|
|
857
|
assertSame("The derived unit of the specimen type designation needs to be the same", specimenTypeDesignationOriginal.getTypeSpecimen(), specimenTypeDesignationClone.getTypeSpecimen());
|
|
858
|
assertSame("The status of the specimen type designation needs to be the same", specimenTypeDesignationOriginal.getTypeStatus(), specimenTypeDesignationClone.getTypeStatus());
|
|
859
|
assertEquals("The specimen type designation must have exactly 1 typified name which is 'clone'", 1, specimenTypeDesignationClone.getTypifiedNames().size());
|
|
860
|
assertTrue("The specimen type designation must have 'clone' as typified name", specimenTypeDesignationClone.getTypifiedNames().contains(clone));
|
|
861
|
// assertSame("The specimen type designation must have the same homotypical group as the typified name", specimenTypeDesignationClone.getHomotypicalGroup(), clone.getHomotypicalGroup());
|
|
862
|
|
|
863
|
assertEquals("There should be exactly 1 name type designation", 1, genusClone.getTypeDesignations().size());
|
|
864
|
assertNotSame("type designation sets should not be the same", genusName.getTypeDesignations(), genusClone.getTypeDesignations());
|
|
865
|
NameTypeDesignation nameTypeDesignationClone = (NameTypeDesignation)genusClone.getTypeDesignations().iterator().next();
|
|
866
|
assertNotSame("The name type designation should not be the same", nameTypeDesignationOriginal, nameTypeDesignationClone);
|
|
867
|
assertSame("The nyme type of the name type designation needs to be the same", taxonNameBase1, nameTypeDesignationClone.getTypeName());
|
|
868
|
assertSame("The status of the name type designation needs to be the same", nameTypeDesignationOriginal.getTypeStatus(), nameTypeDesignationClone.getTypeStatus());
|
|
869
|
assertEquals("The name type designation must have exactly 1 typified name which is 'genusClone'", 1, nameTypeDesignationClone.getTypifiedNames().size());
|
|
870
|
assertTrue("The name type designation must have 'genusClone' as typified name", nameTypeDesignationClone.getTypifiedNames().contains(genusClone));
|
|
871
|
// assertSame("The name type designation must have the same homotypical group as the typified name", nameTypeDesignationClone.getHomotypicalGroup(), genusClone.getHomotypicalGroup());
|
|
872
|
|
|
873
|
//status
|
|
874
|
assertEquals("There should be exactly 1 status", 1, clone.getStatus().size());
|
|
875
|
assertNotSame("Status sets should not be the same", taxonNameBase1.getStatus(), clone.getStatus());
|
|
876
|
NomenclaturalStatus cloneStatus = clone.getStatus().iterator().next();
|
|
877
|
assertSame("The type of the nomStatus needs to be the same", nomStatus.getType(), cloneStatus.getType());
|
|
878
|
assertSame("The citation of the nomStatus needs to be the same", nomStatus.getCitation(), cloneStatus.getCitation());
|
|
879
|
assertSame("The rule considered of the nomStatus needs to be the same", nomStatus.getRuleConsidered(), cloneStatus.getRuleConsidered());
|
|
880
|
//DISCUSS: do we want to reuse the status
|
|
881
|
// assertSame("The nomStatus needs to be the same", nomStatus, cloneStatus);
|
|
882
|
|
|
883
|
|
|
884
|
// //hybrid parents of clone
|
|
885
|
// assertEquals("There should be exactly 2 hybrid relationships in which the clone takes the child role", 2, clone.getChildRelationships().size());
|
|
886
|
// Set<NonViralName> parentSet = new HashSet<NonViralName>();
|
|
887
|
// Set<NonViralName> childSet = new HashSet<NonViralName>();
|
|
888
|
// for (Object object : clone.getChildRelationships()){
|
|
889
|
// HybridRelationship childRelation = (HybridRelationship)object;
|
|
890
|
// NonViralName relatedFrom = childRelation.getRelatedFrom();
|
|
891
|
// parentSet.add(relatedFrom);
|
|
892
|
// NonViralName relatedTo = childRelation.getRelatedTo();
|
|
893
|
// childSet.add(relatedTo);
|
|
894
|
// }
|
|
895
|
// assertTrue("Parent set should contain parent1", parentSet.contains(parent));
|
|
896
|
// assertTrue("Parent set should contain parent2", parentSet.contains(parent2));
|
|
897
|
// assertTrue("Child set should contain clone", childSet.contains(clone));
|
|
898
|
|
|
899
|
//basionym of clone
|
|
900
|
assertEquals("There should be exactly 1 relationship in which the clone takes the to role", 1, clone.getRelationsToThisName().size());
|
|
901
|
NameRelationship nameRelation = clone.getRelationsToThisName().iterator().next();
|
|
902
|
assertSame("Basionym should be from-object in relationship", basionym, nameRelation.getRelatedFrom());
|
|
903
|
assertSame("Clone should be to-object in relationship", clone, nameRelation.getRelatedTo());
|
|
904
|
assertSame("Relationship type should be cloned correctly", NameRelationshipType.BASIONYM(), nameRelation.getType());
|
|
905
|
// assertEquals("Rule should be cloned correctly", "later homonym rule", nameRelation.getRuleConsidered());
|
|
906
|
|
|
907
|
|
|
908
|
//homonym of clone
|
|
909
|
assertEquals("There should be exactly 1 relationship in which the clone takes the from role", 1, clone.getRelationsFromThisName().size());
|
|
910
|
nameRelation = clone.getRelationsFromThisName().iterator().next();
|
|
911
|
assertSame("Clone should be from-object in relationship", clone, nameRelation.getRelatedFrom());
|
|
912
|
assertSame("Homonym should be to-object in relationship", earlierHomonym, nameRelation.getRelatedTo());
|
|
913
|
assertSame("Relationship type should be cloned correctly", NameRelationshipType.LATER_HOMONYM(), nameRelation.getType());
|
|
914
|
assertEquals("Rule should be cloned correctly", "later homonym rule", nameRelation.getRuleConsidered());
|
|
915
|
}
|
|
916
|
|
|
917
|
}
|