/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/SpecimenImportConfiguratorBase.java - EDIT - EDIT Project Management

| Branch: | Tag: | Revision:

cdmlib/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/SpecimenImportConfiguratorBase.java @ d45008d0

       /**
       * Copyright (C) 2016 EDIT
       * European Distributed Institute of Taxonomy
       * http://www.e-taxonomy.eu
+      *
       * The contents of this file are subject to the Mozilla Public License Version 1.1
       * See LICENSE.TXT at the top of this package for the full license terms.
       */
       package eu.etaxonomy.cdm.io.specimen;
       import java.net.URI;
       import java.util.HashMap;
       import java.util.Map;
       import java.util.UUID;
       import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
       import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
       import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
       import eu.etaxonomy.cdm.model.agent.Person;
       import eu.etaxonomy.cdm.model.agent.Team;
       import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
       /**
        * @author k.luther
        * @date 15.07.2016
+       *
        */
       public abstract class SpecimenImportConfiguratorBase<STATE extends SpecimenImportStateBase, InputStream>  extends ImportConfiguratorBase<STATE, InputStream> {
           /**
            * @param transformer
            */
           public SpecimenImportConfiguratorBase(IInputTransformer transformer) {
               super(transformer);
+          }
           private boolean ignoreImportOfExistingSpecimen = true;
           private boolean reuseExistingTaxaWhenPossible = true;
           private final Map<UUID, UUID> taxonToDescriptionMap = new HashMap<UUID, UUID>();
           private Map<String, Team> titleCacheTeam;
           private Map<String, Person> titleCachePerson;
           private boolean ignoreAuthorship = false;
           private boolean removeCountryFromLocalityText = false;
           protected OccurenceQuery query ;
           private boolean addMediaAsMediaSpecimen = false;
           private boolean reuseExistingMetaData = true;
           private static String sourceReferenceTitle = null;
           private String taxonReference = null;
           private boolean addIndividualsAssociationsSuchAsSpecimenAndObservations = true;
           private boolean reuseExistingDescriptiveGroups = false;
           private String defaultAuthor="";
           private boolean allowReuseOtherClassifications =true;
           private boolean deduplicateReferences = false;
           private boolean deduplicateClassifications = false;
           private boolean moveNewTaxaToDefaultClassification = true;
           private boolean mapUnitIdToCatalogNumber = true;
           private boolean mapUnitIdToAccessionNumber = false;
           private boolean mapUnitIdToBarcode = false;
           private boolean overwriteExistingSpecimens = false;
           private SpecimenOrObservationType type;
           /**
            * @return the type
            */
           public SpecimenOrObservationType getType() {
               return type;
+          }
           /**
            * @param type the type to set
            */
           public void setType(SpecimenOrObservationType type) {
               this.type = type;
+          }
           private final SpecimenUserInteraction specimenUserInteraction = new SpecimenUserInteraction();
           protected Map<String,UUID> namedAreaDecisions = new HashMap<String,UUID>();
           private URI reportUri;
           public boolean isIgnoreImportOfExistingSpecimen() {
               return ignoreImportOfExistingSpecimen;
+          }
           public void setIgnoreImportOfExistingSpecimen(boolean ignoreImportOfExistingSpecimen) {
               this.ignoreImportOfExistingSpecimen = ignoreImportOfExistingSpecimen;
+          }
           public Map<String, Team> getTitleCacheTeam() {
               return titleCacheTeam;
+          }
           public void setTitleCacheTeam(Map<String, Team> titleCacheTeam) {
               this.titleCacheTeam = titleCacheTeam;
+          }
           public Map<String, Person> getTitleCachePerson() {
               return titleCachePerson;
+          }
           public void setTitleCachePerson(Map<String, Person> titleCachePerson) {
               this.titleCachePerson = titleCachePerson;
+          }
           public OccurenceQuery getQuery() {
               return query;
+          }
           public void setQuery(OccurenceQuery query) {
               this.query = query;
+          }
           public String getTaxonReference() {
               return taxonReference;
+          }
           public void setTaxonReference(String taxonReference) {
               this.taxonReference = taxonReference;
+          }
           public boolean isAddIndividualsAssociationsSuchAsSpecimenAndObservations() {
               return addIndividualsAssociationsSuchAsSpecimenAndObservations;
+          }
           public void setAddIndividualsAssociationsSuchAsSpecimenAndObservations(
                   boolean addIndividualsAssociationsSuchAsSpecimenAndObservations) {
               this.addIndividualsAssociationsSuchAsSpecimenAndObservations = addIndividualsAssociationsSuchAsSpecimenAndObservations;
+          }
           public boolean isReuseExistingDescriptiveGroups() {
               return reuseExistingDescriptiveGroups;
+          }
           public void setReuseExistingDescriptiveGroups(boolean reuseExistingDescriptiveGroups) {
               this.reuseExistingDescriptiveGroups = reuseExistingDescriptiveGroups;
+          }
           public String getDefaultAuthor() {
               return defaultAuthor;
+          }
           public void setDefaultAuthor(String defaultAuthor) {
               this.defaultAuthor = defaultAuthor;
+          }
           public boolean isAllowReuseOtherClassifications() {
               return allowReuseOtherClassifications;
+          }
           public void setAllowReuseOtherClassifications(boolean allowReuseOtherClassifications) {
               this.allowReuseOtherClassifications = allowReuseOtherClassifications;
+          }
           public boolean isDeduplicateReferences() {
               return deduplicateReferences;
+          }
           public void setDeduplicateReferences(boolean deduplicateReferences) {
               this.deduplicateReferences = deduplicateReferences;
+          }
           public boolean isDeduplicateClassifications() {
               return deduplicateClassifications;
+          }
           public void setDeduplicateClassifications(boolean deduplicateClassifications) {
               this.deduplicateClassifications = deduplicateClassifications;
+          }
           public boolean isMoveNewTaxaToDefaultClassification() {
               return moveNewTaxaToDefaultClassification;
+          }
           public void setMoveNewTaxaToDefaultClassification(boolean moveNewTaxaToDefaultClassification) {
               this.moveNewTaxaToDefaultClassification = moveNewTaxaToDefaultClassification;
+          }
           public boolean isMapUnitIdToCatalogNumber() {
               return mapUnitIdToCatalogNumber;
+          }
           public void setMapUnitIdToCatalogNumber(boolean mapUnitIdToCatalogNumber) {
               this.mapUnitIdToCatalogNumber = mapUnitIdToCatalogNumber;
+          }
           public boolean isMapUnitIdToAccessionNumber() {
               return mapUnitIdToAccessionNumber;
+          }
           public void setMapUnitIdToAccessionNumber(boolean mapUnitIdToAccessionNumber) {
               this.mapUnitIdToAccessionNumber = mapUnitIdToAccessionNumber;
+          }
           public boolean isMapUnitIdToBarcode() {
               return mapUnitIdToBarcode;
+          }
           public void setMapUnitIdToBarcode(boolean mapUnitIdToBarcode) {
               this.mapUnitIdToBarcode = mapUnitIdToBarcode;
+          }
           public Map<String, UUID> getNamedAreaDecisions() {
               return namedAreaDecisions;
+          }
           public void setNamedAreaDecisions(Map<String,UUID> namedAreaDecisions) {
               this.namedAreaDecisions = namedAreaDecisions;
+          }
           public void putNamedAreaDecision(String areaStr,UUID uuid){
               this.namedAreaDecisions.put(areaStr,uuid);
+          }
           public UUID getNamedAreaDecision(String areaStr){
               return namedAreaDecisions.get(areaStr);
+          }
           public Map<UUID, UUID> getTaxonToDescriptionMap() {
               return taxonToDescriptionMap;
+          }
           public SpecimenUserInteraction getSpecimenUserInteraction() {
               return specimenUserInteraction;
+          }
           public void setReuseExistingTaxaWhenPossible(boolean reuseExistingTaxaWhenPossible) {
               this.reuseExistingTaxaWhenPossible = reuseExistingTaxaWhenPossible;
+          }
           public void setIgnoreAuthorship(boolean ignoreAuthorship) {
               this.ignoreAuthorship = ignoreAuthorship;
+          }
           public void setRemoveCountryFromLocalityText(boolean removeCountryFromLocalityText) {
               this.removeCountryFromLocalityText = removeCountryFromLocalityText;
+          }
           public void setAddMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen) {
               this.addMediaAsMediaSpecimen = addMediaAsMediaSpecimen;
+          }
           public void setOverwriteExistingSpecimens(boolean overwriteExistingSpecimens) {
               this.overwriteExistingSpecimens = overwriteExistingSpecimens;
+          }
           public boolean isOverwriteExistingSpecimens(){
               return overwriteExistingSpecimens;
+          }
           /**
            * @return
            */
           public boolean isReuseExistingTaxaWhenPossible() {
               return reuseExistingTaxaWhenPossible;
+          }
           /**
            * @param titleCacheTeam
            */
           public void setTeams(Map<String, Team> titleCacheTeam) {
              this.titleCacheTeam  = titleCacheTeam;
+          }
           public Team getTeam(String titleCache){
               return titleCacheTeam.get(titleCache);
+          }
           public Map<String, Team> getTeams(){
               return titleCacheTeam;
+          }
           /**
            * @param titleCachePerson
            */
           public void setPersons(Map<String, Person> titleCachePerson) {
               this.titleCachePerson = titleCachePerson;
+          }
           public Map<String, Person> getPersons(){
               return titleCachePerson;
+          }
           public Person getPerson(String titleCache){
               return titleCachePerson.get(titleCache);
+          }
           public boolean isAddMediaAsMediaSpecimen(){
               return addMediaAsMediaSpecimen;
+          }
           public void addMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen){
              this.addMediaAsMediaSpecimen = addMediaAsMediaSpecimen;
+          }
           /**
            * @return
            */
           public boolean isIgnoreAuthorship() {
               return ignoreAuthorship;
+          }
           /**
            * @return
            */
           public boolean isRemoveCountryFromLocalityText() {
               return removeCountryFromLocalityText;
+          }
           public OccurenceQuery getOccurenceQuery(){
               return query;
+          }
           public void setOccurenceQuery(OccurenceQuery query){
               this.query = query;
+          }
           /**
            * @return the reuseExistingMetaData
            */
           public boolean isReuseExistingMetaData() {
               return reuseExistingMetaData;
+          }
           /**
            * @param reuseExistingMetaData the reuseExistingMetaData to set
            */
           public void setReuseExistingMetaData(boolean reuseExistingMetaData) {
               this.reuseExistingMetaData = reuseExistingMetaData;
+          }
           public void setReportUri(URI reportUri) {
               this.reportUri = reportUri;
+          }
           public URI getReportUri() {
               return reportUri;
+          }
           @Override
           public String getSourceReferenceTitle(){
               return this.sourceReferenceTitle;
+          }
           @Override
           public void setSourceReferenceTitle(String name){
               this.sourceReferenceTitle=name;
+          }
           @Override
           public boolean isValid(){
               return true;
+          }
+      }

(3-3/7)

Project

General

Profile

EDIT