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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.csv.redlist.out;
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import java.io.ByteArrayOutputStream;
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import java.io.File;
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import java.util.ArrayList;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.XmlExportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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/**
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* @author a.oppermann
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* @created 17.10.2012
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*/
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public class CsvTaxExportConfiguratorRedlist extends XmlExportConfiguratorBase<CsvTaxExportStateRedlist> {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(CsvTaxExportConfiguratorRedlist.class);
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private String encoding = "UTF-8";
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private String linesTerminatedBy = "\r\n";
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private String fieldsEnclosedBy = "\"";
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private boolean hasHeaderLines = true;
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private String fieldsTerminatedBy=",";
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private boolean doTaxa = true;
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private boolean doDistributions = false;
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private ByteArrayOutputStream baos;
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private boolean isUseIdWherePossible = false;
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private boolean includeBasionymsInResourceRelations;
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private boolean includeMisappliedNamesInResourceRelations;
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private String defaultBibliographicCitation = null;
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private List<UUID> featureExclusions = new ArrayList<UUID>();
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//filter on the classifications to be exported
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private Set<UUID> taxonNodeUuids = new HashSet<UUID>();
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private boolean withHigherClassification = false;
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private String setSeparator = ";";
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private List<Feature> features;
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private String classificationTitleCache;
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private List<NamedArea> areas;
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//TODO
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private static IExportTransformer defaultTransformer = null;
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public static CsvTaxExportConfiguratorRedlist NewInstance(ICdmDataSource source, File destinationFolder) {
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return new CsvTaxExportConfiguratorRedlist(source, destinationFolder);
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}
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@Override
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@SuppressWarnings("unchecked")
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protected void makeIoClassList() {
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ioClassList = new Class[] {
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CsvTaxExportRedlist.class
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};
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}
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/**
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* @param url
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* @param destination
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*/
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private CsvTaxExportConfiguratorRedlist(ICdmDataSource source, File destination) {
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super(destination, source, defaultTransformer);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSource()
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*/
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@Override
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public File getDestination() {
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return super.getDestination();
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}
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/**
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* @param file
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*/
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@Override
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public void setDestination(File fileName) {
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super.setDestination(fileName);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IExportConfigurator#getDestinationNameString()
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*/
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@Override
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public String getDestinationNameString() {
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if (this.getDestination() == null) {
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return null;
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} else {
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return this.getDestination().toString();
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IExportConfigurator#getNewState()
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*/
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public CsvTaxExportStateRedlist getNewState() {
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return new CsvTaxExportStateRedlist(this);
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}
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public boolean isDoTaxa() {
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return doTaxa;
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}
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public void setDoTaxa(boolean doTaxa) {
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this.doTaxa = doTaxa;
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}
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public boolean isDoDistributions() {
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return doDistributions;
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}
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public void setDoDistributions(boolean doDistributions) {
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this.doDistributions = doDistributions;
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}
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public void setFeatureExclusions(List<UUID> featureExclusions) {
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this.featureExclusions = featureExclusions;
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}
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public List<UUID> getFeatureExclusions() {
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return featureExclusions;
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}
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public String getEncoding() {
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return encoding;
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}
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public void setEncoding(String encoding) {
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this.encoding = encoding;
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}
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public String getLinesTerminatedBy() {
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return linesTerminatedBy;
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}
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public void setLinesTerminatedBy(String linesTerminatedBy) {
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this.linesTerminatedBy = linesTerminatedBy;
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}
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public String getFieldsEnclosedBy() {
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return fieldsEnclosedBy;
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}
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public void setFieldsEnclosedBy(String fieldsEnclosedBy) {
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this.fieldsEnclosedBy = fieldsEnclosedBy;
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}
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/**
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* Equals darwin core archive ignoreHeaderLines attribute
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* @return
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*/
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public boolean isHasHeaderLines() {
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return hasHeaderLines;
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}
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public void setHasHeaderLines(boolean hasHeaderLines) {
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this.hasHeaderLines = hasHeaderLines;
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}
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public boolean isIncludeBasionymsInResourceRelations() {
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return includeBasionymsInResourceRelations;
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}
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public void setIncludeBasionymsInResourceRelations(boolean includeBasionymsInResourceRelations) {
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this.includeBasionymsInResourceRelations = includeBasionymsInResourceRelations;
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}
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public boolean isIncludeMisappliedNamesInResourceRelations() {
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return includeMisappliedNamesInResourceRelations;
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}
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public void setIncludeMisappliedNamesInResourceRelations(boolean includeMisappliedNamesInResourceRelations) {
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this.includeMisappliedNamesInResourceRelations = includeMisappliedNamesInResourceRelations;
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}
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public boolean isUseIdWherePossible() {
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return this.isUseIdWherePossible;
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}
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public void setUseIdWherePossible(boolean isUseIdWherePossible) {
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this.isUseIdWherePossible = isUseIdWherePossible;
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}
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public void setDefaultBibliographicCitation(String defaultBibliographicCitation) {
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this.defaultBibliographicCitation = defaultBibliographicCitation;
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}
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public String getDefaultBibliographicCitation() {
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return defaultBibliographicCitation;
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}
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/**
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* The default value for the taxon.source column. This may be a column linking to a url that provides
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* data about the given taxon. The id is replaced by a placeholder,
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* e.g. http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{id}.
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* NOTE: This may be replaced in future versions by concrete CDM server implementations.
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*
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* @return the taxonSourceDefault
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*/
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public boolean isWithHigherClassification() {
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return withHigherClassification;
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}
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public void setWithHigherClassification(boolean withHigherClassification) {
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this.withHigherClassification = withHigherClassification;
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}
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/**
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* @return the setSeparator
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*/
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public String getSetSeparator() {
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return setSeparator;
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}
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/**
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* @param setSeparator the setSeparator to set
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*/
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public void setSetSeparator(String setSeparator) {
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this.setSeparator = setSeparator;
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}
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public void setFieldsTerminatedBy(String fieldsTerminatedBy) {
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this.fieldsTerminatedBy = fieldsTerminatedBy;
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}
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public String getFieldsTerminatedBy() {
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return fieldsTerminatedBy;
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}
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public Set<UUID> getTaxonNodeUuids() {
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return taxonNodeUuids;
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}
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public void setTaxonNodeUuids(Set<UUID> taxonNodeUuids) {
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this.taxonNodeUuids = taxonNodeUuids;
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}
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public ByteArrayOutputStream getByteArrayOutputStream() {
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return baos;
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}
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public void setByteArrayOutputStream(ByteArrayOutputStream baos) {
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this.baos = baos;
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}
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public void setFeatures(List<Feature> features) {
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this.features = features;
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}
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public List<Feature> getFeatures() {
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return features;
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}
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public void setClassificationTitleCache(String classificationTitleCache) {
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this.classificationTitleCache = classificationTitleCache;
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}
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public String getClassificationTitleCache() {
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return classificationTitleCache;
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}
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/**
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* @param areas
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*/
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public void setNamedAreas(List<NamedArea> areas) {
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// TODO Auto-generated method stub
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this.areas = areas;
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}
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public List<NamedArea> getNamedAreas(){
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return areas;
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}
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}
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