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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.csv.redlist.demo;
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import java.io.PrintWriter;
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import java.net.URISyntaxException;
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import java.util.ArrayList;
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import java.util.List;
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import org.apache.log4j.Logger;
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import com.fasterxml.jackson.annotation.JsonIgnore;
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import eu.etaxonomy.cdm.io.dwca.TermUri;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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/**
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* @author a.oppermann
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* @date 18.10.2012
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*
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*/
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public class CsvDemoRecord extends CsvDemoRecordBase{
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(CsvDemoRecord.class);
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private String scientificNameId;
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private String scientificName;
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private String taxonomicStatus;
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private final CsvDemoId datasetId;
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private String taxonConceptID;
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private String datasetName;
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private ArrayList<String> synonyms;
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private String threadStatus;
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private ArrayList<String> countryCodes;
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private ArrayList<String> headlines;
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private Boolean isHeadLinePrinted;
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private List<Feature> features;
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private List<List<String>> featuresCells;
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private final CsvDemoExportConfigurator config;
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private String authorshipCache;
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private String rank;
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private String parentUuid;
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private String lastUpdated;
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private String externalID;
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/**
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*
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* @param metaDataRecord
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* @param config
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*/
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public CsvDemoRecord(CsvDemoMetaDataRecord metaDataRecord, CsvDemoExportConfigurator config){
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super(metaDataRecord, config);
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this.config = config;
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datasetId = new CsvDemoId(config);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase#registerKnownFields()
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*/
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@Override
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protected void registerKnownFields(){
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try {
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addKnownField(TermUri.DWC_SCIENTIFIC_NAME);
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addKnownField(TermUri.DWC_TAXONOMIC_STATUS);
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addKnownField(TermUri.DWC_DATASET_NAME);
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addKnownField("countryCode", "http://rs.tdwg.org/dwc/terms/countryCode");
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} catch (URISyntaxException e) {
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throw new RuntimeException(e);
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}
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}
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@Override
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public void write(PrintWriter writer) {
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if(isHeadLinePrinted() != null && isHeadLinePrinted() == true){
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printHeadline(writer, setHeadlines(), TermUri.DWC_DATASET_NAME);
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isHeadLinePrinted=false;
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}
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if(config.isClassification()){
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print(datasetName, writer, IS_FIRST, TermUri.DWC_DATASET_NAME);
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}
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if(config.isDoTaxonConceptExport()){
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if(config.isTaxonName()){
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print(scientificName, writer, IS_FIRST, TermUri.DWC_SCIENTIFIC_NAME);
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}
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}else{
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if(config.isTaxonName()){
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print(scientificName, writer, IS_NOT_FIRST, TermUri.DWC_SCIENTIFIC_NAME);
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}
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}
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if(config.isTaxonNameID()){
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print(scientificNameId, writer, IS_NOT_FIRST, TermUri.DWC_DATASET_ID);
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}
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if(config.isAuthor()){
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print(authorshipCache, writer, IS_NOT_FIRST, TermUri.DC_CREATOR);
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}
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if(config.isRank()){
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print(rank, writer, IS_NOT_FIRST, TermUri.DWC_TAXON_RANK);
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}
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if(config.isTaxonConceptID()){
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print(taxonConceptID, writer, IS_NOT_FIRST, TermUri.DWC_TAXON_CONCEPT_ID);
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}
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if(config.isTaxonStatus()){
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print(taxonomicStatus, writer, IS_NOT_FIRST, TermUri.DWC_TAXONOMIC_STATUS);
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}
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if(config.isAcceptedName()){
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//TODO print accepted Name
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}
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if(config.isParentID()){
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print(parentUuid, writer, IS_NOT_FIRST, TermUri.DWC_PARENT_NAME_USAGE_ID);
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}
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if(config.isSynonyms()){
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print(synonyms, TermUri.DWC_SCIENTIFIC_NAME, writer);
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}
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if(config.isDistributions()){
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print(countryCodes, TermUri.DWC_COUNTRY_CODE, writer);
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}
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if(config.isRedlistFeatures()){
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if(features != null ||featuresCells != null || !featuresCells.isEmpty()){
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for(List<String> featureList : featuresCells) {
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print((ArrayList<String>)featureList, TermUri.DWC_LIFESTAGE, writer);
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}
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}
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}
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if(config.isExternalID()){
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print(externalID, writer, IS_NOT_FIRST,TermUri.DWC_ORIGINAL_NAME_USAGE_ID);
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}
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if(config.isLastChange()){
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print(lastUpdated, writer, IS_NOT_FIRST,TermUri.DC_MODIFIED);
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}
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writer.println();
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}
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//--------------Getter-Setter-Methods------------------//
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/* public String getDatasetName() {
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return datasetName;
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}*/
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public void setDatasetName(String datasetName) {
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this.datasetName = datasetName;
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}
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public String getScientificName() {
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return scientificName;
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}
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public void setScientificName(String scientificName) {
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this.scientificName = scientificName;
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}
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/* public String getTaxonomicStatus() {
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return taxonomicStatus;
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}*/
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public void setTaxonomicStatus(String taxonomicStatus) {
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this.taxonomicStatus = taxonomicStatus;
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}
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/* public String getDatasetId() {
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return datasetId.getId();
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}*/
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public void setDatasetId(Classification classification) {
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this.datasetId.setId(classification);
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}
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public void setSynonyms(ArrayList<String> synonyms){
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this.synonyms = synonyms;
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}
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/* public ArrayList<String> getSynonyms(){
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return synonyms;
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}*/
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/* public String getThreadStatus() {
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return threadStatus;
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}*/
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public void setThreadStatus(String threadStatus) {
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this.threadStatus = threadStatus;
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}
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public void setCountryCode(ArrayList<String> countryCodes) {
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this.countryCodes = countryCodes;
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}
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//FIXME: hard coded header lines
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private ArrayList<String> setHeadlines(){
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// if(config.isDoDemoExport()){
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headlines = new ArrayList<String>();
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if(config.isClassification()){
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headlines.add("Classification");
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}
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if(config.isTaxonName()){
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headlines.add("Wissenschaftlicher Name");
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}
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if(config.isTaxonNameID()){
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headlines.add("Taxon ID");
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}
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if(config.isAuthor()){
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headlines.add("Autor");
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}
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if(config.isRank()){
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headlines.add("Rang");
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}
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if(config.isTaxonStatus()){
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headlines.add("Taxon Status");
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}
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if(config.isAcceptedName()){
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headlines.add("Akzeptierter Name");
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}
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if(config.isTaxonConceptID()){
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headlines.add("Taxon Konzept ID");
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}
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if(config.isParentID()){
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headlines.add("Parent ID");
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}
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if(config.isSynonyms()){
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headlines.add("Synonym");
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}
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if(config.isDistributions()){
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headlines.add("Distribution");
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}
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if(features != null){
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if(!features.isEmpty()){
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for(Feature f : features) {
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headlines.add(f.getLabel());
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}
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}
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}
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if(config.isExternalID()){
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headlines.add("External ID");
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}
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if(config.isLastChange()){
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headlines.add("Letztes Update");
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}
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// }else if(config.isDoTaxonConceptExport()){
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// headlines = new ArrayList<String>();
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// Collections.addAll(headlines, "Taxon Name UUID","Taxon Name","Author","Rank","Taxon Status","Accepted Name", "Taxon Concept ID", "Parent ID", "Last Change");
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// }
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return headlines;
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}
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@JsonIgnore
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public Boolean isHeadLinePrinted() {
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return isHeadLinePrinted;
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}
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public void setHeadLinePrinted(Boolean isHeadLinePrinted) {
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this.isHeadLinePrinted = isHeadLinePrinted;
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}
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public void setScientificNameId(String scientificNameId) {
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this.scientificNameId = scientificNameId;
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}
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public void setPrintFeatures(List<Feature> features) {
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this.features = features;
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}
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public void setFeatures(List<List<String>> featureCells) {
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this.featuresCells = featureCells;
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}
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public void setAuthorName(String authorshipCache) {
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this.authorshipCache = authorshipCache;
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}
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public void setRank(String rank) {
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this.rank = rank;
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}
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public void setParentUUID(String parentUuid) {
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this.parentUuid = parentUuid;
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}
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public void setLastChange(String lastUpdated) {
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this.lastUpdated = lastUpdated;
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}
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public void setTaxonConceptID(String taxonConceptID) {
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this.taxonConceptID = taxonConceptID;
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}
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public void setExternalID(String externalID) {
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this.externalID = externalID;
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}
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/**
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* @return the scientificNameId
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*/
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/* public String getScientificNameId() {
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return scientificNameId;
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}*/
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/**
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* @return the taxonConceptID
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*/
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public String getTaxonConceptID() {
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return taxonConceptID;
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}
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/*
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public ArrayList<String> getCountryCodes() {
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return countryCodes;
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}
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*/
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/**
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* @return the authorshipCache
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*/
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public String getAuthor() {
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return authorshipCache;
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}
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/**
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* @return the rank
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*/
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public String getRank() {
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return rank;
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}
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/**
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* @return the parentUuid
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*/
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public String getParentUuid() {
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return parentUuid;
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}
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/**
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* @return the lastUpdated
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*/
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public String getLastUpdated() {
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return lastUpdated;
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}
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/**
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* @return the externalID
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*/
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public String getExternalID() {
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return externalID;
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}
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}
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