|
1
|
/**
|
|
2
|
* Copyright (C) 2013 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.ext.occurrence.bioCase;
|
|
10
|
|
|
11
|
import static org.junit.Assert.assertEquals;
|
|
12
|
import static org.junit.Assert.fail;
|
|
13
|
|
|
14
|
import java.io.BufferedReader;
|
|
15
|
import java.io.IOException;
|
|
16
|
import java.io.InputStream;
|
|
17
|
import java.io.InputStreamReader;
|
|
18
|
import java.net.URI;
|
|
19
|
import java.util.HashSet;
|
|
20
|
import java.util.Set;
|
|
21
|
|
|
22
|
import org.apache.http.client.ClientProtocolException;
|
|
23
|
import org.apache.log4j.Logger;
|
|
24
|
import org.junit.Test;
|
|
25
|
|
|
26
|
import eu.etaxonomy.cdm.common.UriUtils;
|
|
27
|
import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
|
|
28
|
|
|
29
|
/**
|
|
30
|
* @author pplitzner
|
|
31
|
* @date 16.09.2013
|
|
32
|
*
|
|
33
|
*/
|
|
34
|
public class BioCaseQueryServiceWrapperTest {
|
|
35
|
|
|
36
|
public static final Logger logger = Logger.getLogger(BioCaseQueryServiceWrapperTest.class);
|
|
37
|
|
|
38
|
private static final int MAX_LINES_TO_READ = 1000;
|
|
39
|
private static final int TIMEOUT = 60000;
|
|
40
|
|
|
41
|
@Test(timeout=TIMEOUT)
|
|
42
|
public void testQuery() {
|
|
43
|
|
|
44
|
if(UriUtils.isInternetAvailable(null)){
|
|
45
|
BioCaseQueryServiceWrapper queryService = new BioCaseQueryServiceWrapper();
|
|
46
|
try {
|
|
47
|
OccurenceQuery query = new OccurenceQuery("Campanula patula*", null, null, null, null, null, null, null, null);
|
|
48
|
InputStream response = queryService.query(query, URI.create("http://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar"));
|
|
49
|
if(response==null){
|
|
50
|
logger.error("SKIPPING TEST: No response from BioCase provider");
|
|
51
|
return;
|
|
52
|
}
|
|
53
|
BufferedReader reader = new BufferedReader(new InputStreamReader(response));
|
|
54
|
String line = null;
|
|
55
|
int count = 0;
|
|
56
|
do {
|
|
57
|
if(count>MAX_LINES_TO_READ){
|
|
58
|
fail("Service response did not include parameter to test.");
|
|
59
|
break;
|
|
60
|
}
|
|
61
|
if(line!=null){
|
|
62
|
System.out.println(line);
|
|
63
|
String recordAttr = "recordCount=\"";
|
|
64
|
int index = line.indexOf(recordAttr);
|
|
65
|
if(index>-1){
|
|
66
|
String recordCount = line.substring(index+recordAttr.length(), index+recordAttr.length()+1);
|
|
67
|
assertEquals("Incorrect number of occurrences", 2, Integer.parseInt(recordCount));
|
|
68
|
break;
|
|
69
|
}
|
|
70
|
}
|
|
71
|
line = reader.readLine();
|
|
72
|
count++;
|
|
73
|
} while (line!=null);
|
|
74
|
} catch (NumberFormatException e) {
|
|
75
|
fail(e.getMessage());
|
|
76
|
} catch (ClientProtocolException e) {
|
|
77
|
fail(e.getMessage());
|
|
78
|
} catch (IOException e) {
|
|
79
|
fail(e.getMessage());
|
|
80
|
}
|
|
81
|
} else {
|
|
82
|
logger.error("SKIPPING TEST: no internet connectivity available");
|
|
83
|
return;
|
|
84
|
}
|
|
85
|
}
|
|
86
|
|
|
87
|
@Test//(timeout=TIMEOUT)
|
|
88
|
public void testQueryForUnitId(){
|
|
89
|
|
|
90
|
if(UriUtils.isInternetAvailable(null)){
|
|
91
|
BioCaseQueryServiceWrapper service = new BioCaseQueryServiceWrapper();
|
|
92
|
try {
|
|
93
|
Set<String[]> unitIds = new HashSet<String[]>();
|
|
94
|
String[] unitIdArray ={"29596"};
|
|
95
|
unitIds.add(unitIdArray);
|
|
96
|
InputStream queryForSingleUnit = service.query(new OccurenceQuery(unitIds), URI.create("http://www.flora-mv.de/biocase/pywrapper.cgi?dsa=hoeherePflanzen"));
|
|
97
|
|
|
98
|
if(queryForSingleUnit==null){
|
|
99
|
logger.error("SKIPPING TEST: No response from BioCase provider");
|
|
100
|
return;
|
|
101
|
}
|
|
102
|
BufferedReader reader = new BufferedReader(new InputStreamReader(queryForSingleUnit));
|
|
103
|
String line = null;
|
|
104
|
int count = 0;
|
|
105
|
do {
|
|
106
|
if(count>MAX_LINES_TO_READ){
|
|
107
|
fail("Service response did not include parameter to test.");
|
|
108
|
break;
|
|
109
|
}
|
|
110
|
if(line!=null){
|
|
111
|
System.out.println(line);
|
|
112
|
String recordAttr = "recordCount=\"";
|
|
113
|
int index = line.indexOf(recordAttr);
|
|
114
|
if(index>-1){
|
|
115
|
String recordCount = line.substring(index+recordAttr.length(), index+recordAttr.length()+1);
|
|
116
|
assertEquals("Incorrect number of occurrences", 1, Integer.parseInt(recordCount.trim()));
|
|
117
|
}
|
|
118
|
String unitId = "<abcd:UnitID>";
|
|
119
|
int indexId = line.indexOf(unitId);
|
|
120
|
if(indexId>-1){
|
|
121
|
String id = line.substring(indexId+unitId.length(), indexId+unitId.length()+5);
|
|
122
|
// assertEquals("Incorrect UnitId", 29596, Integer.parseInt(id));
|
|
123
|
// break;
|
|
124
|
}
|
|
125
|
}
|
|
126
|
line = reader.readLine();
|
|
127
|
count++;
|
|
128
|
} while (line!=null);
|
|
129
|
unitIds = new HashSet<String[]>();
|
|
130
|
String[] unitIdsArray = {"B -W 16385 -00 0"};
|
|
131
|
unitIds.add(unitIdsArray);
|
|
132
|
String[] unitIdsArray2 ={"B 10 0641985"};
|
|
133
|
unitIds.add(unitIdsArray2);
|
|
134
|
queryForSingleUnit = service.query(new OccurenceQuery(unitIds), URI.create("http://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar"));
|
|
135
|
if(queryForSingleUnit==null){
|
|
136
|
logger.error("SKIPPING TEST: No response from BioCase provider");
|
|
137
|
return;
|
|
138
|
}
|
|
139
|
reader = new BufferedReader(new InputStreamReader(queryForSingleUnit));
|
|
140
|
line = null;
|
|
141
|
count = 0;
|
|
142
|
do {
|
|
143
|
if(count>MAX_LINES_TO_READ){
|
|
144
|
fail("Service response did not include parameter to test.");
|
|
145
|
break;
|
|
146
|
}
|
|
147
|
if(line!=null){
|
|
148
|
System.out.println(line);
|
|
149
|
String recordAttr = "recordCount=\"";
|
|
150
|
int index = line.indexOf(recordAttr);
|
|
151
|
if(index>-1){
|
|
152
|
String recordCount = line.substring(index+recordAttr.length(), index+recordAttr.length()+1);
|
|
153
|
assertEquals("Incorrect number of occurrences", 2, Integer.parseInt(recordCount));
|
|
154
|
}
|
|
155
|
|
|
156
|
|
|
157
|
}
|
|
158
|
line = reader.readLine();
|
|
159
|
count++;
|
|
160
|
} while (line!=null);
|
|
161
|
} catch (NumberFormatException e) {
|
|
162
|
fail(e.getMessage());
|
|
163
|
} catch (ClientProtocolException e) {
|
|
164
|
fail(e.getMessage());
|
|
165
|
} catch (IOException e) {
|
|
166
|
fail(e.getMessage());
|
|
167
|
}
|
|
168
|
} else {
|
|
169
|
logger.error("SKIPPING TEST: no internet connectivity available");
|
|
170
|
return;
|
|
171
|
}
|
|
172
|
}
|
|
173
|
}
|