EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.model.name;

import javax.persistence.Entity;

import javax.persistence.FetchType;

import javax.persistence.JoinColumn;

import javax.persistence.ManyToOne;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlIDREF;

import javax.xml.bind.annotation.XmlRootElement;

import javax.xml.bind.annotation.XmlSchemaType;

import javax.xml.bind.annotation.XmlType;

import org.apache.logging.log4j.LogManager;

import org.apache.logging.log4j.Logger;

import org.hibernate.annotations.Cascade;

import org.hibernate.annotations.CascadeType;

import org.hibernate.envers.Audited;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;

import eu.etaxonomy.cdm.model.reference.Reference;

/**

 * The class representing a typification of one or several {@link TaxonName taxon names} by a

 * {@link eu.etaxonomy.cdm.model.occurrence.DerivedUnit specimen or a figure}. All {@link TaxonName taxon names}

 * which have a {@link Rank rank} "species aggregate" or lower can only be typified

 * by specimens. Moreover each typification by a specimen (or by a figure) has a

 * {@link SpecimenTypeDesignationStatus status} like "holotype" or "isotype".

 * <P>

 * This class corresponds to: <ul>

 * <li> NomenclaturalType according to the TDWG ontology

 * <li> Typification (partially) according to the TCS

 * <li> NomenclaturalTypeDesignation according to the ABCD schema

 * </ul>

 *

 * @see		TypeDesignationBase

 * @see		NameTypeDesignation

 * @author	m.doering

 * @since 08-Nov-2007 13:06:38

 */

@XmlRootElement(name = "SpecimenTypeDesignation")

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "SpecimenTypeDesignation", propOrder = {

    "typeSpecimen"

})

@Entity

@Audited

public class SpecimenTypeDesignation

        extends TypeDesignationBase<SpecimenTypeDesignationStatus> {

	private static final long serialVersionUID = 6481627446997275007L;

	private static final Logger logger = LogManager.getLogger(SpecimenTypeDesignation.class);

	@XmlElement(name = "TypeSpecimen")

	@XmlIDREF

	@XmlSchemaType(name = "IDREF")

	@ManyToOne(fetch = FetchType.LAZY)

	@JoinColumn(name="typeSpecimen_id")

	@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE})

	private DerivedUnit typeSpecimen;

    public static SpecimenTypeDesignation NewInstance() {

        return new SpecimenTypeDesignation();

    }

//	/**

//	 * Creates a new specimen type designation instance

//	 * (including its {@link reference.Reference reference source} and eventually

//	 * the taxon name string originally used by this reference when establishing

//	 * the former designation) and adds it to the corresponding

//	 * {@link HomotypicalGroup#getSpecimenTypeDesignations() specimen type designation set} of the

//	 * {@link HomotypicalGroup homotypical group}.

//	 *

//	 * @param specimen				the derived unit (specimen or figure) used as type

//	 * @param status				the type designation status

//	 * @param citation				the reference source for the new designation

//	 * @param citationMicroReference	the string with the details describing the exact localisation within the reference

//	 * @param originalNameString	the taxon name string used originally in the reference source for the new designation

//	 * @see							#SpecimenTypeDesignation(DerivedUnit, TypeDesignationStatus, Reference, String, String)

//	 * @see							HomotypicalGroup#addSpecimenTypeDesignation(SpecimenTypeDesignation, boolean)

//	 * @see							occurrence.DerivedUnit

//	 */

//	protected static SpecimenTypeDesignation NewInstance2(DerivedUnit specimen, TypeDesignationStatus status,

//			Reference citation, String citationMicroReference, String originalNameString){

//		SpecimenTypeDesignation specTypeDesig = new SpecimenTypeDesignation(specimen, status, citation, citationMicroReference, originalNameString);

//		return specTypeDesig;

//	}

// ************* CONSTRUCTORS *************/

	/**

	 * Class constructor: creates a new empty specimen type designation.

	 *

	 * @see	#SpecimenTypeDesignation(DerivedUnit, SpecimenTypeDesignationStatus,

	 * Reference, String, String, boolean)

	 */

	protected SpecimenTypeDesignation(){

	}

	/**

	 * Class constructor: creates a new specimen type designation instance

	 * (including its {@link eu.etaxonomy.cdm.model.reference.Reference reference source} and

	 * eventually the taxon name string originally used by this reference when

	 * establishing the former designation).

	 *

	 * @param specimen				the derived unit (specimen or figure) used

	 * 								as type

	 * @param status				the type designation status

	 * @param citation				the reference source for the new designation

	 * @param citationMicroReference	the string with the details describing

	 * 								the exact localisation within the reference

	 * @param originalNameString	the taxon name string used originally in the

	 * 								reference source for the new designation

	 * @param isNotDesignated		the boolean flag indicating whether there is no specimen type at all for

	 * 								<i>this</i> specimen type designation

	 * @see							#SpecimenTypeDesignation()

	 * @see							TaxonName#addSpecimenTypeDesignation(Specimen, SpecimenTypeDesignationStatus, Reference, String, String, boolean, boolean)

	 * @see							TypeDesignationBase#isNotDesignated()

	 * @see							eu.etaxonomy.cdm.model.occurrence.DerivedUnit

	 */

	protected SpecimenTypeDesignation(DerivedUnit specimen, SpecimenTypeDesignationStatus status, Reference citation, String citationMicroReference,

			String originalNameString, boolean isNotDesignated) {

		super(citation, citationMicroReference, originalNameString, isNotDesignated);

		this.setTypeSpecimen(specimen);

		this.setTypeStatus(status);

	}

//********* METHODS **************************************/

	@Override

	public void removeType() {

		this.setTypeSpecimen(null);

	}

	/**

	 * Returns the {@link DerivedUnit.DerivedUnit derived unit} (specimen or figure) that is used

	 * in <i>this</i> specimen type designation to typify the {@link TaxonName taxon name}.

	 *

	 * @see   #getHomotypicalGroup()

	 */

	public DerivedUnit getTypeSpecimen(){

		return this.typeSpecimen;

	}

	/**

	 * @see  #getTypeSpecimen()

	 */

	public void setTypeSpecimen(DerivedUnit typeSpecimen){

		if (this.typeSpecimen == typeSpecimen){

			return;

		}

		if (this.typeSpecimen != null){

			this.typeSpecimen.removeSpecimenTypeDesignation(this);

		}

		if (typeSpecimen != null && ! typeSpecimen.getSpecimenTypeDesignations().contains(this)){

			typeSpecimen.addSpecimenTypeDesignation(this);

		}

		this.typeSpecimen = typeSpecimen;

	}

//*********************** CLONE ********************************************************/

	/**

	 * Clones <i>this</i> type specimen. This is a shortcut that enables to create

	 * a new instance that differs only slightly from <i>this</i> type specimen by

	 * modifying only some of the attributes.

	 *

	 * @see eu.etaxonomy.cdm.model.name.TypeDesignationBase#clone()

	 * @see java.lang.Object#clone()

	 */

	@Override

	public SpecimenTypeDesignation clone() {

		SpecimenTypeDesignation result;

		try {

			result = (SpecimenTypeDesignation)super.clone();

			//no changes to: typeSpecimen

			return result;

		} catch (CloneNotSupportedException e) {

			logger.warn("Object does not implement cloneable");

			e.printStackTrace();

			return null;

		}

	}

}