EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.api.service;

import java.util.Collection;

import java.util.List;

import java.util.Map;

import java.util.Set;

import java.util.UUID;

import org.springframework.security.core.Authentication;

import eu.etaxonomy.cdm.api.service.config.PublishForSubtreeConfigurator;

import eu.etaxonomy.cdm.api.service.config.SecundumForSubtreeConfigurator;

import eu.etaxonomy.cdm.api.service.config.SubtreeCloneConfigurator;

import eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator;

import eu.etaxonomy.cdm.api.service.dto.CreateTaxonDTO;

import eu.etaxonomy.cdm.api.service.dto.TaxonDistributionDTO;

import eu.etaxonomy.cdm.api.service.pager.Pager;

import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;

import eu.etaxonomy.cdm.compare.taxon.TaxonNodeSortMode;

import eu.etaxonomy.cdm.filter.TaxonNodeFilter;

import eu.etaxonomy.cdm.model.common.Language;

import eu.etaxonomy.cdm.model.common.LanguageString;

import eu.etaxonomy.cdm.model.metadata.SecReferenceHandlingEnum;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.reference.NamedSource;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.taxon.Classification;

import eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode;

import eu.etaxonomy.cdm.model.taxon.SynonymType;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

import eu.etaxonomy.cdm.model.taxon.TaxonNode;

import eu.etaxonomy.cdm.model.taxon.TaxonNodeAgentRelation;

import eu.etaxonomy.cdm.model.taxon.TaxonNodeStatus;

import eu.etaxonomy.cdm.model.term.DefinedTerm;

import eu.etaxonomy.cdm.persistence.dao.common.Restriction;

import eu.etaxonomy.cdm.persistence.dto.HomotypicGroupDto;

import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;

import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;

import eu.etaxonomy.cdm.persistence.query.OrderHint;

/**

 * @author n.hoffmann

 * @since Apr 9, 2010

 */

public interface ITaxonNodeService extends IAnnotatableService<TaxonNode>{

	/**

	 * returns the childnodes of the taxonNode, if recursive is true it returns all descendants, if sort is true the nodes are sorted

	 *

	 * @param taxonNode

	 * @param propertyPaths

	 * @param recursive

	 * @return List<TaxonNode>

	 */

	public List<TaxonNode> loadChildNodesOfTaxonNode(TaxonNode taxonNode, List<String> propertyPaths, boolean recursive,  boolean includeUnpublished, TaxonNodeSortMode sortMode);

	/**

	 * Lists all direct child nodes of the given {@link UuidAndTitleCache} which

	 * represents the parent {@link TaxonNode}

	 * @param parent a UuidAndTitleCache object which represents a parent {@link TaxonNode}

	 * @return a list of UuidAndTitleCache objects that represent children of the

	 * parent

	 */

//	public List<UuidAndTitleCache<TaxonNode>> listChildNodesAsUuidAndTitleCache(UuidAndTitleCache<TaxonNode> parent);

    public List<TaxonNode> listChildrenOf(TaxonNode node, Integer pageSize, Integer pageIndex,

            boolean recursive, boolean includeUnpublished, List<String> propertyPaths);

	/**

     * Retrieves a list of {@link UuidAndTitleCache} objects that have a matchin titleCache

     *

     * @param limit the maximum results

     * @param pattern the titleCache that is searched for

     * @param classificationUuid if specified only nodes of this classification are retrieved

     * @return a list of matches

     */

	public List<TaxonNodeDto> getUuidAndTitleCache(Integer limit, String pattern, UUID classificationUuid);

    /**

     * Retrieves the parent node of the child {@link TaxonNode}

     * @param child the child for which the parent should be retrieved

     * @return the parent taxon node

     */

	public TaxonNodeDto getParentUuidAndTitleCache(ITaxonTreeNode child);

	/**

     * Retrieves the parent node of the {@link TaxonNode} represented by the given {@link UuidAndTitleCache}.

     * @param child the child for which the parent should be retrieved

     * @return an UuidAndTitleCache object representing the parent node

     */

	public TaxonNodeDto getParentUuidAndTitleCache(TaxonNodeDto child);

//	/**

//     * Lists all direct child nodes of the given {@link ITaxonTreeNode}

//     * @param parent the parent ITaxonTreeNode

//     * @return a list of UuidAndTitleCache objects that represent children of the

//     * parent

//     */

//	public List<UuidAndTitleCache<TaxonNode>> listChildNodesAsUuidAndTitleCache(ITaxonTreeNode parent);

	/**

     *Returns the childnodes of the taxonNode, if recursive is true it returns all descendants, if sort is true the nodes are sorted

     *

     * @param taxonNode

     * @param recursive

     * @param doSynonyms if true also synonyms are returned as children

     * @param sortMode

     * @param pageSize

     * @param pageIndex

     *

     * @return List<TaxonNodeDto>

     */

    public Pager<TaxonNodeDto> pageChildNodesDTOs(UUID taxonNodeUuid, boolean recursive, boolean includeUnpublished,

            boolean doSynonyms, TaxonNodeSortMode sortMode,

            Integer pageSize, Integer pageIndex);

    public TaxonNodeDto parentDto(UUID taxonNodeUuid);

	/**

	 * Changes the taxon associated with the given taxon node into a synonym of the new accepted taxon node.

	 * All data associated with the former taxon are moved to the newly accepted taxon.

	 */

	public DeleteResult makeTaxonNodeASynonymOfAnotherTaxonNode(TaxonNode oldTaxonNode, TaxonNode newAcceptedTaxonNode, SynonymType synonymType, Reference citation,  String microReference, SecReferenceHandlingEnum secHandling, boolean setNameInSource) ;

	/**

	 * Changes the taxa associated with the given taxon nodes into synonyms of the new accepted taxon node.

	 * All data associated with the former taxa are moved to the newly accepted taxon.

	 */

	public DeleteResult makeTaxonNodeSynonymsOfAnotherTaxonNode(Set<UUID> oldTaxonNodeUuids, UUID newAcceptedTaxonNodeUUIDs,

			SynonymType synonymType, UUID citationUuid, String microReference, SecReferenceHandlingEnum secHandling, boolean setNameInSource);

	public DeleteResult makeTaxonNodeASynonymOfAnotherTaxonNode(UUID oldTaxonNodeUuid,

	        UUID newAcceptedTaxonNodeUUID,

	        SynonymType synonymType,

	        UUID citationUuid,

	        String microReference,

	        SecReferenceHandlingEnum secHandling,

	        boolean setNameInSource) ;

    public DeleteResult deleteTaxonNodes(Collection<UUID> nodeUuids, TaxonDeletionConfigurator config);

	/**

	 * deletes the given taxon node the configurator defines whether the children will be deleted too or not

	 */

	public DeleteResult deleteTaxonNode(TaxonNode node, TaxonDeletionConfigurator config);

	/**

	 * Returns a List of all TaxonNodes of a given Classification.

	 *

	 * @param classification - according to the given classification the TaxonNodes are filtered.

	 * @param start -  beginning of wanted row set, i.e. 0 if one want to start from the beginning.

	 * @param end  - limit of how many rows are to be pulled from the database, i.e. 1000 rows.

	 * @return filtered List of TaxonNode according to the classification provided

	 */

    /**

     * @param nodeUuid

     * @param config

     * @return

     */

    public DeleteResult deleteTaxonNode(UUID nodeUuid, TaxonDeletionConfigurator config);

	public List<TaxonNode> listAllNodesForClassification(Classification classification, Integer start, Integer end);

	/**

	 * Counts all TaxonNodes for a given Classification

	 *

	 * @param classification - according to the given classification the TaxonNodes are filtered.

	 * @return the count result

	 */

	public int countAllNodesForClassification(Classification classification);

    public UpdateResult moveTaxonNode(UUID taxonNodeUuid, UUID newParentTaxonNodeUuid, int movingType, SecReferenceHandlingEnum secHandling, UUID secUuid);

    public UpdateResult moveTaxonNode(TaxonNode taxonNode, TaxonNode newParent, int movingType, SecReferenceHandlingEnum secHandling, Reference sec);

    public UpdateResult moveTaxonNodes(Set<UUID> taxonNodeUuids, UUID newParentNodeUuid, int movingType, SecReferenceHandlingEnum secHandling, UUID secUuid,            IProgressMonitor monitor);

    /**

     * deletes the given taxon nodes

     */

    public DeleteResult deleteTaxonNodes(List<TaxonNode> list, TaxonDeletionConfigurator config);

    /**

     * Returns the of TaxonNodeAgentRelation entities which are associated with the TaxonNode for the

     * given TaxonUuid in the specified Classification.

     *

     * @param taxonUuid

     * @param agentUuid TODO

     * @param rankUuid TODO

     * @param relTypeUuid TODO

     * @param classification

     * @return

     */

    public Pager<TaxonNodeAgentRelation> pageTaxonNodeAgentRelations(UUID taxonUuid, UUID classificationUuid,

            UUID agentUuid, UUID rankUuid, UUID relTypeUuid, Integer pageSize, Integer pageIndex, List<String> propertyPaths);

    public UpdateResult createNewTaxonNode(UUID parentNodeUuid, CreateTaxonDTO taxonDto, NamedSource source, String microref,

            TaxonNodeStatus status, Map<Language,LanguageString> statusNote);

    public UpdateResult addTaxonNodeAgentRelation(UUID taxonNodeUUID, UUID agentUUID, DefinedTerm relationshipType);

    /**

     * Creates a new taxon node for the given existing taxon with the given existing parent taxon node.

     */

//    public UpdateResult createNewTaxonNode(UUID parentNodeUuid, UUID taxonUuid, UUID refUuid, String microref);

    /**

     * Sets the secundum reference for all taxa of the given subtree.

     * Depending on the configuration, also synonym secundum will be set.

     * See {@link SetSecundumForSubtreeConfigurator} for further configuration

     * options.

     * @return UpdateResult

     */

    public UpdateResult setSecundumForSubtree(SecundumForSubtreeConfigurator config);

    /**

     * Sets the publish flag for all taxa and/or synonyms of the subtree.

     */

    public UpdateResult setPublishForSubtree(PublishForSubtreeConfigurator configurator);

    /**

     * Returns a list of taxon node {@link UUID uuids} according to the given filter.

     */

    public long count(TaxonNodeFilter filter);

    /**

     * Returns a list of taxon node {@link UUID uuids} according to the given filter.

     */

    public List<UUID> uuidList(TaxonNodeFilter filter);

    /**

     * Returns a list of taxon node IDs according to the given filter.

     */

    public List<Integer> idList(TaxonNodeFilter filter);

    public List<TaxonNodeDto> listChildNodesAsTaxonNodeDto(TaxonNodeDto parent);

    public List<TaxonNodeDto> listChildNodesAsTaxonNodeDto(ITaxonTreeNode parent);

    /**

     * Retrieves the first taxon node that is direct or indirect parent

     * to all nodes of the given list of nodes. This can also return

     * the root node of a classification<br>

     * If no common parent node could be found <code>null</code> is returned.

     * @param nodes the direct/indirect child taxon nodes for which the common

     * parent should be retrieved

     * @return the common direct/indirect parent of all nodes

     */

    public TaxonNodeDto findCommonParentDto(Collection<TaxonNodeDto> nodes);

    public TaxonNodeDto dto(UUID taxonNodeUuid);

    public TaxonNodeDto dto(UUID taxonUuid, UUID classificationUuid);

    public <S extends TaxonNode> Pager<S> page(Class<S> clazz, List<Restriction<?>> restrictions, Integer pageSize, Integer pageIndex,

            List<OrderHint> orderHints, List<String> propertyPaths, boolean includeUnpublished);

	public List<TaxonNodeDto> taxonNodeDtoParentRank(Classification classification, Rank rank, TaxonName name);

	public List<TaxonNodeDto> taxonNodeDtoParentRank(Classification classification, Rank rank, TaxonBase<?> taxonBase);

    public List<TaxonDistributionDTO> getTaxonDistributionDTO(List<UUID> nodeUuids, List<String> propertyPaths,

            Authentication authentication, boolean openChildren, TaxonNodeSortMode sortMode);

    public List<TaxonDistributionDTO> getTaxonDistributionDTO(List<UUID> nodeUuids, List<String> propertyPaths, boolean openChildren);

    /**

     * Clones a subtree including all taxa and taxon nodes.

     * @param config the configurator for the cloning

     */

    public UpdateResult cloneSubtree(SubtreeCloneConfigurator config);

    public HomotypicGroupDto getHomotypicGroupDto(UUID homotypicGroupUuid, UUID nodeUuid);

    /**

     * @param nodeUuids

     * @return

     */

    List<TaxonNodeDto> getTaxonNodeDtos(List<UUID> nodeUuids);

    /**

     * @param nodeUuid

     * @return

     */

    TaxonNodeDto getTaxonNodeDto(UUID nodeUuid);

}