EDIT

/**

 * Copyright (C) 2007 EDIT

 * European Distributed Institute of Taxonomy 

 * http://www.e-taxonomy.eu

 * 

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.io.csv.redlist.out;

import java.io.ByteArrayOutputStream;

import java.io.File;

import java.util.ArrayList;

import java.util.HashSet;

import java.util.List;

import java.util.Set;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.XmlExportConfiguratorBase;

import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.location.NamedArea;

/**

 * @author a.oppermann

 * @created 17.10.2012

 */

public class CsvTaxExportConfiguratorRedlist extends XmlExportConfiguratorBase<CsvTaxExportStateRedlist> {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(CsvTaxExportConfiguratorRedlist.class);

	private String encoding = "UTF-8";

	private String linesTerminatedBy = "\r\n";

	private String fieldsEnclosedBy = "\"";

	private boolean hasHeaderLines = true;

	private String fieldsTerminatedBy=",";

	private boolean doTaxa = true;

	private boolean doDistributions = false;

	private ByteArrayOutputStream baos;

	private boolean isUseIdWherePossible = false;

	private boolean includeBasionymsInResourceRelations;

	private boolean includeMisappliedNamesInResourceRelations;

	private String defaultBibliographicCitation = null;

	private List<UUID> featureExclusions = new ArrayList<UUID>();

	//filter on the classifications to be exported

	private Set<UUID> classificationUuids = new HashSet<UUID>();   

	private boolean withHigherClassification = false;

	private String setSeparator = ";";

	private List<Feature> features;

	private String classificationTitleCache;

	private List<NamedArea> areas;

	//TODO

	private static IExportTransformer defaultTransformer = null;

	public static CsvTaxExportConfiguratorRedlist NewInstance(ICdmDataSource source, File destinationFolder) { 

		return new CsvTaxExportConfiguratorRedlist(source, destinationFolder);

	}

	@Override

	@SuppressWarnings("unchecked")

	protected void makeIoClassList() {

		ioClassList = new Class[] {

				CsvTaxExportRedlist.class

		};

	}

	/**

	 * @param url

	 * @param destination

	 */

	private CsvTaxExportConfiguratorRedlist(ICdmDataSource source, File destination) {

		super(destination, source, defaultTransformer);

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSource()

	 */

	@Override

	public File getDestination() {

		return super.getDestination();

	}

	/**

	 * @param file

	 */

	@Override

	public void setDestination(File fileName) {

		super.setDestination(fileName);

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.IExportConfigurator#getDestinationNameString()

	 */

	@Override

	public String getDestinationNameString() {

		if (this.getDestination() == null) {

			return null;

		} else {

			return this.getDestination().toString();

		}

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.IExportConfigurator#getNewState()

	 */

	public CsvTaxExportStateRedlist getNewState() {

		return new CsvTaxExportStateRedlist(this);

	}

	public boolean isDoTaxa() {

		return doTaxa;

	}

	public void setDoTaxa(boolean doTaxa) {

		this.doTaxa = doTaxa;

	}

	public boolean isDoDistributions() {

		return doDistributions;

	}

	public void setDoDistributions(boolean doDistributions) {

		this.doDistributions = doDistributions;

	}

	public void setFeatureExclusions(List<UUID> featureExclusions) {

		this.featureExclusions = featureExclusions;

	}

	public List<UUID> getFeatureExclusions() {

		return featureExclusions;

	}

	public String getEncoding() {

		return encoding;

	}

	public void setEncoding(String encoding) {

		this.encoding = encoding;

	}

	public String getLinesTerminatedBy() {

		return linesTerminatedBy;

	}

	public void setLinesTerminatedBy(String linesTerminatedBy) {

		this.linesTerminatedBy = linesTerminatedBy;

	}

	public String getFieldsEnclosedBy() {

		return fieldsEnclosedBy;

	}

	public void setFieldsEnclosedBy(String fieldsEnclosedBy) {

		this.fieldsEnclosedBy = fieldsEnclosedBy;

	}

	/**

	 * Equals darwin core archive ignoreHeaderLines attribute

	 * @return

	 */

	public boolean isHasHeaderLines() {

		return hasHeaderLines;

	}

	public void setHasHeaderLines(boolean hasHeaderLines) {

		this.hasHeaderLines = hasHeaderLines;

	}

	public boolean isIncludeBasionymsInResourceRelations() {

		return includeBasionymsInResourceRelations;

	}

	public void setIncludeBasionymsInResourceRelations(boolean includeBasionymsInResourceRelations) {

		this.includeBasionymsInResourceRelations = includeBasionymsInResourceRelations;

	}

	public boolean isIncludeMisappliedNamesInResourceRelations() {

		return includeMisappliedNamesInResourceRelations;

	}

	public void setIncludeMisappliedNamesInResourceRelations(boolean includeMisappliedNamesInResourceRelations) {

		this.includeMisappliedNamesInResourceRelations = includeMisappliedNamesInResourceRelations;

	}

	public boolean isUseIdWherePossible() {

		return this.isUseIdWherePossible;

	}

	public void setUseIdWherePossible(boolean isUseIdWherePossible) {

		this.isUseIdWherePossible = isUseIdWherePossible;

	}

	public void setDefaultBibliographicCitation(String defaultBibliographicCitation) {

		this.defaultBibliographicCitation = defaultBibliographicCitation;

	}

	public String getDefaultBibliographicCitation() {

		return defaultBibliographicCitation;

	}

	/**

	 * The default value for the taxon.source column. This may be a column linking to a url that provides 

	 * data about the given taxon. The id is replaced by a placeholder, 

	 * e.g. http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{id}.

	 * NOTE: This may be replaced in future versions by concrete CDM server implementations.

	 * 

	 * @return the taxonSourceDefault

	 */

	public boolean isWithHigherClassification() {

		return withHigherClassification;

	}

	public void setWithHigherClassification(boolean withHigherClassification) {

		this.withHigherClassification = withHigherClassification;

	}

	/**

	 * @return the setSeparator

	 */

	public String getSetSeparator() {

		return setSeparator;

	}

	/**

	 * @param setSeparator the setSeparator to set

	 */

	public void setSetSeparator(String setSeparator) {

		this.setSeparator = setSeparator;

	}

	public void setFieldsTerminatedBy(String fieldsTerminatedBy) {

		this.fieldsTerminatedBy = fieldsTerminatedBy;

	}

	public String getFieldsTerminatedBy() {

		return fieldsTerminatedBy;

	}

	public Set<UUID> getTaxonNodeUuids() {

		return classificationUuids;

	}

	public void setTaxonNodeUuids(Set<UUID> classificationUuids) {

		this.classificationUuids = classificationUuids;

	}

	public ByteArrayOutputStream getByteArrayOutputStream() {

		return baos;

	}

	public void setByteArrayOutputStream(ByteArrayOutputStream baos) {

		this.baos = baos;

	}

	public void setFeatures(List<Feature> features) {

		this.features = features;

	}

	public List<Feature>  getFeatures() {

		return features;

	}

	public void setClassificationTitleCache(String classificationTitleCache) {

		this.classificationTitleCache = classificationTitleCache;

	}

	public String getClassificationTitleCache() {

		return classificationTitleCache;

	}

	/**

	 * @param areas

	 */

	public void setNamedAreas(List<NamedArea> areas) {

		// TODO Auto-generated method stub

		this.areas = areas;

	}

	public List<NamedArea> getNamedAreas(){

		return areas;

	}