|
1
|
/**
|
|
2
|
* Copyright (C) 2007 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.persistence.dao.reference;
|
|
10
|
|
|
11
|
import java.util.List;
|
|
12
|
|
|
13
|
import eu.etaxonomy.cdm.model.common.DefinedTermBase;
|
|
14
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
|
15
|
import eu.etaxonomy.cdm.model.reference.ReferenceType;
|
|
16
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
17
|
import eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao;
|
|
18
|
import eu.etaxonomy.cdm.persistence.dao.common.ITitledDao;
|
|
19
|
import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
|
|
20
|
import eu.etaxonomy.cdm.persistence.query.MatchMode;
|
|
21
|
import eu.etaxonomy.cdm.persistence.query.OrderHint;
|
|
22
|
|
|
23
|
/**
|
|
24
|
* @author a.mueller
|
|
25
|
*
|
|
26
|
*/
|
|
27
|
public interface IReferenceDao extends IIdentifiableDao<Reference>, ITitledDao<Reference> {
|
|
28
|
|
|
29
|
public List<UuidAndTitleCache<Reference>> getUuidAndTitle();
|
|
30
|
|
|
31
|
/**
|
|
32
|
* TODO candidate for harmonization: rename to listAllReferencesForPublishing
|
|
33
|
* @return all references marked with publish-flag
|
|
34
|
*/
|
|
35
|
public List<Reference> getAllReferencesForPublishing();
|
|
36
|
|
|
37
|
/**
|
|
38
|
* TODO candidate for harmonization: rename to listAllNotNomenclaturalReferencesForPublishing
|
|
39
|
* @return all references not used as nomenclatural reference with publish flag
|
|
40
|
*/
|
|
41
|
public List<Reference> getAllNotNomenclaturalReferencesForPublishing();
|
|
42
|
|
|
43
|
/**
|
|
44
|
* TODO candidate for harmonization: rename to listNomenclaturalReferences
|
|
45
|
* @return
|
|
46
|
*/
|
|
47
|
public List<Reference> getAllNomenclaturalReferences();
|
|
48
|
|
|
49
|
/**
|
|
50
|
* recursively finds all references where the <code>referenceBase</code> given as parameter
|
|
51
|
* is the {@link Reference.getInReference inReference}.
|
|
52
|
* @param reference
|
|
53
|
* @return
|
|
54
|
*/
|
|
55
|
public List<Reference> getSubordinateReferences(Reference reference);
|
|
56
|
|
|
57
|
/**
|
|
58
|
* searches for taxa using the following relations:
|
|
59
|
* <ul>
|
|
60
|
* <li>taxon.name.nomenclaturalreference</li>
|
|
61
|
* <li>taxon.descriptions.descriptionElement.sources.citation</li>
|
|
62
|
* <li>taxon.descriptions.descriptionSources</li>
|
|
63
|
* <li>taxon.name.descriptions.descriptionElement.sources</li>
|
|
64
|
* <li>taxon.name.descriptions.descriptionSources</li>
|
|
65
|
* </ul>
|
|
66
|
*
|
|
67
|
* @param reference
|
|
68
|
* @param orderHints TODO
|
|
69
|
* @param propertyPaths TODO
|
|
70
|
* @return
|
|
71
|
*/
|
|
72
|
public List<TaxonBase> listCoveredTaxa(Reference reference, boolean includeSubordinateReferences, List<OrderHint> orderHints, List<String> propertyPaths);
|
|
73
|
|
|
74
|
/**
|
|
75
|
* @param limit
|
|
76
|
* @param pattern
|
|
77
|
* @param refType
|
|
78
|
* @return
|
|
79
|
*/
|
|
80
|
List<UuidAndTitleCache<Reference>> getUuidAndAbbrevTitleCache(Integer limit, String pattern, ReferenceType refType);
|
|
81
|
|
|
82
|
/**
|
|
83
|
* @param limit
|
|
84
|
* @param pattern
|
|
85
|
* @param refType
|
|
86
|
* @return
|
|
87
|
*/
|
|
88
|
List<UuidAndTitleCache<Reference>> getUuidAndTitleCache(Integer limit, String pattern, ReferenceType refType);
|
|
89
|
|
|
90
|
/**
|
|
91
|
* @param identifier
|
|
92
|
* @param identifierType
|
|
93
|
* @param matchmode
|
|
94
|
* @param limit
|
|
95
|
* @return
|
|
96
|
*/
|
|
97
|
List<Object[]> findByIdentifierAbbrev(String identifier, DefinedTermBase identifierType, MatchMode matchmode,
|
|
98
|
Integer limit);
|
|
99
|
|
|
100
|
|
|
101
|
}
|