Revision c0878f62
Added by Katja Luther almost 8 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/caryophyllales/out/CsvNameExport.java | ||
|---|---|---|
| 147 | 147 |
rootNode = getTaxonNodeService().load(rootNode.getUuid(), propertyPaths); |
| 148 | 148 |
Set<UUID> childrenUuids = new HashSet<UUID>(); |
| 149 | 149 |
|
| 150 |
|
|
| 151 |
rootNode = HibernateProxyHelper.deproxy(rootNode, TaxonNode.class); |
|
| 152 |
rootNode.removeNullValueFromChildren(); |
|
| 150 | 153 |
for (TaxonNode child: rootNode.getChildNodes()){
|
| 151 | 154 |
child = HibernateProxyHelper.deproxy(child, TaxonNode.class); |
| 152 | 155 |
childrenUuids.add(child.getUuid()); |
| ... | ... | |
| 165 | 168 |
|
| 166 | 169 |
childrenNodes = getTaxonNodeService().find(childrenUuids); |
| 167 | 170 |
for(TaxonNode genusNode : childrenNodes) {
|
| 168 |
|
|
| 169 |
nameRecords.add(createNewRecord(genusNode, state)); |
|
| 170 |
|
|
| 171 |
if (!genusNode.isTopmostNode()){
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| 172 |
nameRecords.add(createNewRecord(genusNode, state));
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| 173 |
} |
|
| 171 | 174 |
refreshTransaction(); |
| 172 | 175 |
|
| 173 | 176 |
} |
| ... | ... | |
| 188 | 191 |
parentsNodesUUID =new HashSet<UUID>(); |
| 189 | 192 |
for (TaxonNode familyNode: familyNodes){
|
| 190 | 193 |
familyNode = HibernateProxyHelper.deproxy(familyNode, TaxonNode.class); |
| 194 |
familyNode.removeNullValueFromChildren(); |
|
| 191 | 195 |
for (TaxonNode child: familyNode.getChildNodes()){
|
| 192 | 196 |
child = HibernateProxyHelper.deproxy(child, TaxonNode.class); |
| 193 | 197 |
name = HibernateProxyHelper.deproxy(child.getTaxon().getName(), TaxonNameBase.class); |
| 194 |
if (child.getTaxon().getName().getRank().isLower(Rank.GENUS())) {
|
|
| 198 |
if (name.isGenus()) {
|
|
| 195 | 199 |
childrenUuids.add(child.getUuid()); |
| 196 | 200 |
if (child.hasChildNodes()){
|
| 197 | 201 |
parentsNodesUUID.add(child.getUuid()); |
| 198 | 202 |
} |
| 199 |
}else{
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| 200 |
parentsNodesUUID.add(child.getUuid()); |
|
| 201 | 203 |
} |
| 202 | 204 |
} |
| 203 | 205 |
//refreshTransaction(); |
| ... | ... | |
| 265 | 267 |
|
| 266 | 268 |
private TaxonNode getHigherNode(TaxonNode node, Rank rank){
|
| 267 | 269 |
|
| 270 |
node = HibernateProxyHelper.deproxy(node, TaxonNode.class); |
|
| 271 |
TaxonNameBase name = HibernateProxyHelper.deproxy( node.getTaxon().getName(), TaxonNameBase.class); |
|
| 268 | 272 |
Rank nodeRank = node.getTaxon().getName().getRank(); |
| 269 |
if (nodeRank.isKindOf(rank)){
|
|
| 273 |
if (nodeRank.equals(rank)){
|
|
| 270 | 274 |
return node; |
| 271 | 275 |
|
| 272 | 276 |
}else if (nodeRank.isHigher(rank)){
|
| ... | ... | |
| 323 | 327 |
descriptionsString.append(distribution.getArea().getIdInVocabulary()); |
| 324 | 328 |
|
| 325 | 329 |
} |
| 326 |
nameRecord.put(columnName, descriptionsString.toString()); |
|
| 330 |
|
|
| 327 | 331 |
} |
| 332 |
nameRecord.put(columnName, descriptionsString.toString()); |
|
| 328 | 333 |
|
| 329 | 334 |
} |
| 330 | 335 |
|
| ... | ... | |
| 352 | 357 |
HashMap<String, String> nameRecord = new HashMap<String,String>(); |
| 353 | 358 |
nameRecord.put("classification", childNode.getClassification().getTitleCache());
|
| 354 | 359 |
TaxonNode familyNode = getHigherNode(childNode, Rank.FAMILY()); |
| 355 |
familyNode = HibernateProxyHelper.deproxy(familyNode, TaxonNode.class); |
|
| 356 |
familyNode.getTaxon().setProtectedTitleCache(true); |
|
| 357 |
nameRecord.put("familyTaxon", familyNode.getTaxon().getTitleCache());
|
|
| 360 |
Taxon taxon; |
|
| 361 |
BotanicalName name; |
|
| 362 |
if (familyNode != null){
|
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| 363 |
familyNode = HibernateProxyHelper.deproxy(familyNode, TaxonNode.class); |
|
| 364 |
familyNode.getTaxon().setProtectedTitleCache(true); |
|
| 358 | 365 |
|
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nameRecord.put("familyTaxon", familyNode.getTaxon().getTitleCache());
|
|
| 359 | 367 |
|
| 360 | 368 |
|
| 361 | 369 |
|
| 362 |
Taxon taxon = (Taxon)getTaxonService().load(familyNode.getTaxon().getUuid()); |
|
| 363 |
taxon = HibernateProxyHelper.deproxy(taxon, Taxon.class); |
|
| 364 |
//if publish flag is set |
|
| 365 | 370 |
|
| 366 |
// if (taxon.isPublish()){
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| 367 |
BotanicalName name = HibernateProxyHelper.deproxy(taxon.getName(), BotanicalName.class); |
|
| 368 |
nameRecord.put("familyName", name.getNameCache());
|
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| 369 |
extractDescriptions(nameRecord, taxon, Feature.INTRODUCTION(), "descriptionsFam", state); |
|
| 371 |
taxon = (Taxon)getTaxonService().load(familyNode.getTaxon().getUuid()); |
|
| 372 |
taxon = HibernateProxyHelper.deproxy(taxon, Taxon.class); |
|
| 373 |
//if publish flag is set |
|
| 370 | 374 |
|
| 375 |
// if (taxon.isPublish()){
|
|
| 376 |
name = HibernateProxyHelper.deproxy(taxon.getName(), BotanicalName.class); |
|
| 377 |
nameRecord.put("familyName", name.getNameCache());
|
|
| 378 |
extractDescriptions(nameRecord, taxon, Feature.INTRODUCTION(), "descriptionsFam", state); |
|
| 379 |
} else{
|
|
| 380 |
nameRecord.put("familyTaxon", null);
|
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| 381 |
nameRecord.put("familyName", null);
|
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| 382 |
nameRecord.put("descriptionsFam", null);
|
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| 383 |
} |
|
| 371 | 384 |
TaxonNode genusNode = getHigherNode(childNode, Rank.GENUS()); |
| 372 | 385 |
if (genusNode!= null){
|
| 373 | 386 |
genusNode = HibernateProxyHelper.deproxy(genusNode, TaxonNode.class); |
| ... | ... | |
| 385 | 398 |
}else{
|
| 386 | 399 |
nameRecord.put("genusName", name.getGenusOrUninomial());
|
| 387 | 400 |
} |
| 388 |
extractDescriptions(nameRecord, taxon, Feature.INTRODUCTION(), "descriptionsGen", state);
|
|
| 401 |
extractDescriptions(nameRecord, taxon, getNotesFeature(state), "descriptionsGen", state);
|
|
| 389 | 402 |
} |
| 390 | 403 |
taxon = (Taxon) getTaxonService().load(childNode.getTaxon().getUuid()); |
| 391 | 404 |
taxon = HibernateProxyHelper.deproxy(taxon, Taxon.class); |
Also available in: Unified diff
fix NPE of Caryophyllales output test