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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.dwca.out;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.UnsupportedEncodingException;
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import java.util.Set;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementSource;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.reference.IOriginalSource;
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import eu.etaxonomy.cdm.model.reference.ISourceable;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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/**
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* @author a.mueller
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* @since 18.04.2011
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*
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*/
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public abstract class DwcaDataExportBase extends DwcaExportBase{
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private static final long serialVersionUID = -5467295551060073610L;
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DwcaDataExportBase.class);
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abstract protected void handleTaxonNode(DwcaTaxExportState state, TaxonNode node)throws IOException, FileNotFoundException, UnsupportedEncodingException;
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/**
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* Creates the locationId, locality, countryCode triple
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* @param state
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* @param record
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* @param area
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*/
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protected void handleArea(DwcaTaxExportState state, IDwcaAreaRecord record, NamedArea area, TaxonBase<?> taxon, boolean required) {
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if (area != null){
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record.setLocationId(area);
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record.setLocality(area.getLabel());
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if (area.isInstanceOf(Country.class)){
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Country country = CdmBase.deproxy(area, Country.class);
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record.setCountryCode(country.getIso3166_A2());
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}
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}else{
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if (required){
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String message = "Description requires area but area does not exist for taxon " + getTaxonLogString(taxon);
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state.getResult().addWarning(message);
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}
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}
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}
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protected String getTaxonLogString(TaxonBase<?> taxon) {
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return taxon.getTitleCache() + "(" + taxon.getId() + ")";
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}
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protected String getSources(ISourceable<?> sourceable, DwcaTaxExportConfigurator config) {
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String result = "";
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for (IOriginalSource<?> source: sourceable.getSources()){
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if (StringUtils.isBlank(source.getIdInSource())){//idInSource indicates that this source is only data provenance, may be changed in future
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if (source.getCitation() != null){
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String ref = source.getCitation().getTitleCache();
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result = CdmUtils.concat(config.getSetSeparator(), result, ref);
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}
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}
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}
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return result;
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}
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protected String getSources3(ISourceable<?> sourceable, DwcaTaxExportConfigurator config) {
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String result = "";
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for (IOriginalSource<?> source: sourceable.getSources()){
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if (source.getCitation() != null){
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String ref = source.getCitation().getTitleCache();
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result = CdmUtils.concat(config.getSetSeparator(), result, ref);
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}
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}
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return result;
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}
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protected String getSources2(Set<DescriptionElementSource> sources, DwcaTaxExportConfigurator config) {
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String result = "";
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for(DescriptionElementSource source: sources){
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if (StringUtils.isBlank(source.getIdInSource())){//idInSource indicates that this source is only data provenance, may be changed in future
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if (source.getCitation() != null){
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String ref = source.getCitation().getTitleCache();
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result = CdmUtils.concat(config.getSetSeparator(), result, ref);
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}
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}
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}
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return result;
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}
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@Override
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public abstract boolean isIgnore(DwcaTaxExportState state);
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}
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