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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.utility;
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import java.io.IOException;
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import java.util.Collection;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.hibernate.LockOptions;
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.envers.query.criteria.AuditCriterion;
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import org.hibernate.search.spatial.impl.Rectangle;
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import org.junit.Assert;
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import org.junit.Test;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
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import eu.etaxonomy.cdm.api.service.DeleteResult;
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import eu.etaxonomy.cdm.api.service.IOccurrenceService;
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import eu.etaxonomy.cdm.api.service.UpdateResult;
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import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
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import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
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import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;
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import eu.etaxonomy.cdm.api.service.dto.FieldUnitDTO;
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import eu.etaxonomy.cdm.api.service.dto.IdentifiedEntityDTO;
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import eu.etaxonomy.cdm.api.service.dto.MarkedEntityDTO;
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import eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.api.service.search.LuceneParseException;
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import eu.etaxonomy.cdm.api.service.search.SearchResult;
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import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.ISourceable;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.Marker;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.model.view.AuditEventRecord;
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import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
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import eu.etaxonomy.cdm.persistence.dto.MergeResult;
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import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
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import eu.etaxonomy.cdm.persistence.query.Grouping;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
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import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
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import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
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/**
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*
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* @author a.kohlbecker
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* @since Jun 23, 2017
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*
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*/
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public class DerivedUnitConverterTest extends Assert {
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@Test
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public void toMediaSpecimen() throws DerivedUnitConversionException {
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DerivedUnit du = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
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du.setTitleCache("test derived unit", true);
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DerivedUnitConverter<MediaSpecimen> duc = new DerivedUnitConverter<MediaSpecimen>(du, new OccurrenceServiceMock());
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MediaSpecimen target = duc.convertTo(MediaSpecimen.class, SpecimenOrObservationType.StillImage);
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assertNotNull(target);
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assertEquals(SpecimenOrObservationType.StillImage, target.getRecordBasis());
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assertEquals("test derived unit", target.getTitleCache());
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}
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@Test
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public void toDerivedUnit() throws DerivedUnitConversionException {
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MediaSpecimen du = MediaSpecimen.NewInstance(SpecimenOrObservationType.StillImage);
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du.setTitleCache("test media specimen", true);
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DerivedUnitConverter<DerivedUnit> duc = new DerivedUnitConverter<DerivedUnit>(du, new OccurrenceServiceMock());
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DerivedUnit target = duc.convertTo(DerivedUnit.class, SpecimenOrObservationType.PreservedSpecimen);
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assertNotNull(target);
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assertEquals(SpecimenOrObservationType.PreservedSpecimen, target.getRecordBasis());
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assertEquals("test media specimen", target.getTitleCache());
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}
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class OccurrenceServiceMock implements IOccurrenceService {
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/**
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* {@inheritDoc}
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*/
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@Override
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public void updateTitleCache() {
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public void updateTitleCache(Class<? extends SpecimenOrObservationBase> clazz, Integer stepSize,
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IIdentifiableEntityCacheStrategy<SpecimenOrObservationBase> cacheStrategy, IProgressMonitor monitor) {
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public SpecimenOrObservationBase find(LSID lsid) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public SpecimenOrObservationBase replace(SpecimenOrObservationBase x, SpecimenOrObservationBase y) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<IdentifiableSource> getSources(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber,
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List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<Rights> getRights(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber,
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List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public String getTitleCache(UUID uuid, boolean refresh) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<SpecimenOrObservationBase> findByTitle(Class<? extends SpecimenOrObservationBase> clazz,
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String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber,
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List<OrderHint> orderHints, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<SpecimenOrObservationBase> findByTitle(
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IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Integer countByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString,
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MatchMode matchmode, List<Criterion> criteria) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Integer countByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public List<SpecimenOrObservationBase> listByTitle(Class<? extends SpecimenOrObservationBase> clazz,
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String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber,
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List<OrderHint> orderHints, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public List<SpecimenOrObservationBase> listByReferenceTitle(Class<? extends SpecimenOrObservationBase> clazz,
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String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber,
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List<OrderHint> orderHints, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public int deduplicate(Class<? extends SpecimenOrObservationBase> clazz, IMatchStrategy matchStrategy,
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IMergeStrategy mergeStrategy) {
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return 0;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<SpecimenOrObservationBase> findTitleCache(Class<? extends SpecimenOrObservationBase> clazz,
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String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,
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MatchMode matchMode) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public <S extends SpecimenOrObservationBase> Pager<IdentifiedEntityDTO<S>> findByIdentifier(Class<S> clazz,
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String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeCdmEntity,
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Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public <S extends SpecimenOrObservationBase> Pager<MarkedEntityDTO<S>> findByMarker(Class<S> clazz,
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MarkerType markerType, Boolean markerValue, boolean includeEntity, Integer pageSize, Integer pageNumber,
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List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<Annotation> getAnnotations(SpecimenOrObservationBase annotatedObj, MarkerType status,
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Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<Marker> getMarkers(SpecimenOrObservationBase annotatableEntity, Boolean technical,
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Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public List<Object[]> groupMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical,
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Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public int countMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical) {
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return 0;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public <S extends SpecimenOrObservationBase> List<UuidAndTitleCache<S>> getUuidAndTitleCache(Class<S> clazz,
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Integer limit, String pattern) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public List<UuidAndTitleCache<SpecimenOrObservationBase>> getUuidAndTitleCache(Integer limit, String pattern) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(SpecimenOrObservationBase t,
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Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public AuditEventRecord<SpecimenOrObservationBase> getNextAuditEvent(SpecimenOrObservationBase t) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public AuditEventRecord<SpecimenOrObservationBase> getPreviousAuditEvent(SpecimenOrObservationBase t) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(
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Class<? extends SpecimenOrObservationBase> clazz, AuditEvent from, AuditEvent to,
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List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort,
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List<String> propertyPaths) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public DeleteResult isDeletable(UUID object, DeleteConfiguratorBase config) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public void clear() {
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public void lock(SpecimenOrObservationBase t, LockOptions lockOptions) {
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public void refresh(SpecimenOrObservationBase t, LockOptions lockOptions, List<String> propertyPaths) {
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public int count(Class<? extends SpecimenOrObservationBase> clazz) {
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return 0;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public DeleteResult delete(UUID persistentObjectUUID) {
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return null;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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public boolean exists(UUID uuid) {
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return false;
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}
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/**
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* {@inheritDoc}
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*/
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@Override
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461
|
public List<SpecimenOrObservationBase> find(Set<UUID> uuidSet) {
|
462
|
|
463
|
return null;
|
464
|
}
|
465
|
|
466
|
/**
|
467
|
* {@inheritDoc}
|
468
|
*/
|
469
|
@Override
|
470
|
public SpecimenOrObservationBase find(UUID uuid) {
|
471
|
|
472
|
return null;
|
473
|
}
|
474
|
|
475
|
/**
|
476
|
* {@inheritDoc}
|
477
|
*/
|
478
|
@Override
|
479
|
public SpecimenOrObservationBase findWithoutFlush(UUID uuid) {
|
480
|
|
481
|
return null;
|
482
|
}
|
483
|
|
484
|
/**
|
485
|
* {@inheritDoc}
|
486
|
*/
|
487
|
@Override
|
488
|
public SpecimenOrObservationBase find(int id) {
|
489
|
|
490
|
return null;
|
491
|
}
|
492
|
|
493
|
/**
|
494
|
* {@inheritDoc}
|
495
|
*/
|
496
|
@Override
|
497
|
public List<SpecimenOrObservationBase> findById(Set<Integer> idSet) {
|
498
|
|
499
|
return null;
|
500
|
}
|
501
|
|
502
|
/**
|
503
|
* {@inheritDoc}
|
504
|
*/
|
505
|
@Override
|
506
|
public Session getSession() {
|
507
|
|
508
|
return null;
|
509
|
}
|
510
|
|
511
|
/**
|
512
|
* {@inheritDoc}
|
513
|
*/
|
514
|
@Override
|
515
|
public List<Object[]> group(Class<? extends SpecimenOrObservationBase> clazz, Integer limit, Integer start,
|
516
|
List<Grouping> groups, List<String> propertyPaths) {
|
517
|
|
518
|
return null;
|
519
|
}
|
520
|
|
521
|
/**
|
522
|
* {@inheritDoc}
|
523
|
*/
|
524
|
@Override
|
525
|
public <S extends SpecimenOrObservationBase> List<S> list(Class<S> type, Integer limit, Integer start,
|
526
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
527
|
|
528
|
return null;
|
529
|
}
|
530
|
|
531
|
/**
|
532
|
* {@inheritDoc}
|
533
|
*/
|
534
|
@Override
|
535
|
public SpecimenOrObservationBase load(UUID uuid) {
|
536
|
|
537
|
return null;
|
538
|
}
|
539
|
|
540
|
/**
|
541
|
* {@inheritDoc}
|
542
|
*/
|
543
|
@Override
|
544
|
public SpecimenOrObservationBase load(int id, List<String> propertyPaths) {
|
545
|
|
546
|
return null;
|
547
|
}
|
548
|
|
549
|
/**
|
550
|
* {@inheritDoc}
|
551
|
*/
|
552
|
@Override
|
553
|
public SpecimenOrObservationBase load(UUID uuid, List<String> propertyPaths) {
|
554
|
|
555
|
return null;
|
556
|
}
|
557
|
|
558
|
/**
|
559
|
* {@inheritDoc}
|
560
|
*/
|
561
|
@Override
|
562
|
public List<SpecimenOrObservationBase> load(List<UUID> uuids, List<String> propertyPaths) {
|
563
|
|
564
|
return null;
|
565
|
}
|
566
|
|
567
|
/**
|
568
|
* {@inheritDoc}
|
569
|
*/
|
570
|
@Override
|
571
|
public SpecimenOrObservationBase merge(SpecimenOrObservationBase transientObject) {
|
572
|
|
573
|
return null;
|
574
|
}
|
575
|
|
576
|
/**
|
577
|
* {@inheritDoc}
|
578
|
*/
|
579
|
@Override
|
580
|
public <S extends SpecimenOrObservationBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber,
|
581
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
582
|
|
583
|
return null;
|
584
|
}
|
585
|
|
586
|
/**
|
587
|
* {@inheritDoc}
|
588
|
*/
|
589
|
@Override
|
590
|
public UUID refresh(SpecimenOrObservationBase persistentObject) {
|
591
|
|
592
|
return null;
|
593
|
}
|
594
|
|
595
|
/**
|
596
|
* {@inheritDoc}
|
597
|
*/
|
598
|
@Override
|
599
|
public List<SpecimenOrObservationBase> rows(String tableName, int limit, int start) {
|
600
|
|
601
|
return null;
|
602
|
}
|
603
|
|
604
|
/**
|
605
|
* {@inheritDoc}
|
606
|
*/
|
607
|
@Override
|
608
|
public Map<UUID, SpecimenOrObservationBase> save(Collection<SpecimenOrObservationBase> newInstances) {
|
609
|
|
610
|
return null;
|
611
|
}
|
612
|
|
613
|
/**
|
614
|
* {@inheritDoc}
|
615
|
*/
|
616
|
@Override
|
617
|
public SpecimenOrObservationBase save(SpecimenOrObservationBase newInstance) {
|
618
|
|
619
|
return null;
|
620
|
}
|
621
|
|
622
|
/**
|
623
|
* {@inheritDoc}
|
624
|
*/
|
625
|
@Override
|
626
|
public UUID saveOrUpdate(SpecimenOrObservationBase transientObject) {
|
627
|
|
628
|
return null;
|
629
|
}
|
630
|
|
631
|
/**
|
632
|
* {@inheritDoc}
|
633
|
*/
|
634
|
@Override
|
635
|
public Map<UUID, SpecimenOrObservationBase> saveOrUpdate(
|
636
|
Collection<SpecimenOrObservationBase> transientObjects) {
|
637
|
|
638
|
return null;
|
639
|
}
|
640
|
|
641
|
/**
|
642
|
* {@inheritDoc}
|
643
|
*/
|
644
|
@Override
|
645
|
public UUID update(SpecimenOrObservationBase transientObject) {
|
646
|
|
647
|
return null;
|
648
|
}
|
649
|
|
650
|
/**
|
651
|
* {@inheritDoc}
|
652
|
*/
|
653
|
@Override
|
654
|
public SpecimenOrObservationBase loadWithUpdate(UUID uuid) {
|
655
|
|
656
|
return null;
|
657
|
}
|
658
|
|
659
|
/**
|
660
|
* {@inheritDoc}
|
661
|
*/
|
662
|
@Override
|
663
|
public List<SpecimenOrObservationBase> list(SpecimenOrObservationBase example, Set<String> includeProperties,
|
664
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
665
|
|
666
|
return null;
|
667
|
}
|
668
|
|
669
|
/**
|
670
|
* {@inheritDoc}
|
671
|
*/
|
672
|
@Override
|
673
|
public DeleteResult delete(SpecimenOrObservationBase persistentObject) {
|
674
|
|
675
|
return null;
|
676
|
}
|
677
|
|
678
|
/**
|
679
|
* {@inheritDoc}
|
680
|
*/
|
681
|
@Override
|
682
|
public DeleteResult delete(Collection<UUID> persistentObjectUUIDs) {
|
683
|
|
684
|
return null;
|
685
|
}
|
686
|
|
687
|
/**
|
688
|
* {@inheritDoc}
|
689
|
*/
|
690
|
@Override
|
691
|
public List<SpecimenOrObservationBase> merge(List<SpecimenOrObservationBase> detachedObjects) {
|
692
|
|
693
|
return null;
|
694
|
}
|
695
|
|
696
|
/**
|
697
|
* {@inheritDoc}
|
698
|
*/
|
699
|
@Override
|
700
|
public List<SpecimenOrObservationBase> loadByIds(List<Integer> idSet, List<String> propertyPaths) {
|
701
|
|
702
|
return null;
|
703
|
}
|
704
|
|
705
|
/**
|
706
|
* {@inheritDoc}
|
707
|
*/
|
708
|
@Override
|
709
|
public List<MergeResult<SpecimenOrObservationBase>> merge(List<SpecimenOrObservationBase> detachedObjects,
|
710
|
boolean returnTransientEntity) {
|
711
|
|
712
|
return null;
|
713
|
}
|
714
|
|
715
|
/**
|
716
|
* {@inheritDoc}
|
717
|
*/
|
718
|
@Override
|
719
|
public MergeResult<SpecimenOrObservationBase> merge(SpecimenOrObservationBase newInstance,
|
720
|
boolean returnTransientEntity) {
|
721
|
|
722
|
return null;
|
723
|
}
|
724
|
|
725
|
/**
|
726
|
* {@inheritDoc}
|
727
|
*/
|
728
|
@Override
|
729
|
public Country getCountryByIso(String iso639) {
|
730
|
|
731
|
return null;
|
732
|
}
|
733
|
|
734
|
/**
|
735
|
* {@inheritDoc}
|
736
|
*/
|
737
|
@Override
|
738
|
public List<Country> getCountryByName(String name) {
|
739
|
|
740
|
return null;
|
741
|
}
|
742
|
|
743
|
/**
|
744
|
* {@inheritDoc}
|
745
|
*/
|
746
|
@Override
|
747
|
public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> type,
|
748
|
TaxonBase determinedAs, Integer limit, Integer start, List<OrderHint> orderHints,
|
749
|
List<String> propertyPaths) {
|
750
|
|
751
|
return null;
|
752
|
}
|
753
|
|
754
|
/**
|
755
|
* {@inheritDoc}
|
756
|
*/
|
757
|
@Override
|
758
|
public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> type,
|
759
|
TaxonName determinedAs, Integer limit, Integer start, List<OrderHint> orderHints,
|
760
|
List<String> propertyPaths) {
|
761
|
|
762
|
return null;
|
763
|
}
|
764
|
|
765
|
/**
|
766
|
* {@inheritDoc}
|
767
|
*/
|
768
|
@Override
|
769
|
public Pager<Media> getMedia(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber,
|
770
|
List<String> propertyPaths) {
|
771
|
|
772
|
return null;
|
773
|
}
|
774
|
|
775
|
/**
|
776
|
* {@inheritDoc}
|
777
|
*/
|
778
|
@Override
|
779
|
public Pager<Media> getMediainHierarchy(SpecimenOrObservationBase rootOccurence, Integer pageSize,
|
780
|
Integer pageNumber, List<String> propertyPaths) {
|
781
|
|
782
|
return null;
|
783
|
}
|
784
|
|
785
|
/**
|
786
|
* {@inheritDoc}
|
787
|
*/
|
788
|
@Override
|
789
|
public int countDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonbase) {
|
790
|
|
791
|
return 0;
|
792
|
}
|
793
|
|
794
|
/**
|
795
|
* {@inheritDoc}
|
796
|
*/
|
797
|
@Override
|
798
|
public Pager<DeterminationEvent> getDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonBase,
|
799
|
Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
800
|
|
801
|
return null;
|
802
|
}
|
803
|
|
804
|
/**
|
805
|
* {@inheritDoc}
|
806
|
*/
|
807
|
@Override
|
808
|
public Pager<DerivationEvent> getDerivationEvents(SpecimenOrObservationBase occurence, Integer pageSize,
|
809
|
Integer pageNumber, List<String> propertyPaths) {
|
810
|
|
811
|
return null;
|
812
|
}
|
813
|
|
814
|
/**
|
815
|
* {@inheritDoc}
|
816
|
*/
|
817
|
@Override
|
818
|
public Pager<SpecimenOrObservationBase> search(Class<? extends SpecimenOrObservationBase> clazz, String query,
|
819
|
Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
820
|
|
821
|
return null;
|
822
|
}
|
823
|
|
824
|
/**
|
825
|
* {@inheritDoc}
|
826
|
*/
|
827
|
@Override
|
828
|
public List<UuidAndTitleCache<FieldUnit>> getFieldUnitUuidAndTitleCache() {
|
829
|
|
830
|
return null;
|
831
|
}
|
832
|
|
833
|
/**
|
834
|
* {@inheritDoc}
|
835
|
*/
|
836
|
@Override
|
837
|
public List<UuidAndTitleCache<DerivedUnit>> getDerivedUnitUuidAndTitleCache(Integer limit, String pattern) {
|
838
|
|
839
|
return null;
|
840
|
}
|
841
|
|
842
|
/**
|
843
|
* {@inheritDoc}
|
844
|
*/
|
845
|
@Override
|
846
|
public DerivedUnitFacade getDerivedUnitFacade(DerivedUnit derivedUnit, List<String> propertyPaths)
|
847
|
throws DerivedUnitFacadeNotSupportedException {
|
848
|
|
849
|
return null;
|
850
|
}
|
851
|
|
852
|
/**
|
853
|
* {@inheritDoc}
|
854
|
*/
|
855
|
@Override
|
856
|
public List<DerivedUnitFacade> listDerivedUnitFacades(DescriptionBase description, List<String> propertyPaths) {
|
857
|
|
858
|
return null;
|
859
|
}
|
860
|
|
861
|
/**
|
862
|
* {@inheritDoc}
|
863
|
*/
|
864
|
@Override
|
865
|
public <T extends SpecimenOrObservationBase> List<T> listByAssociatedTaxon(Class<T> type,
|
866
|
Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth,
|
867
|
Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
868
|
|
869
|
return null;
|
870
|
}
|
871
|
|
872
|
/**
|
873
|
* {@inheritDoc}
|
874
|
*/
|
875
|
@Override
|
876
|
public Collection<SpecimenOrObservationBase> listFieldUnitsByAssociatedTaxon(Taxon associatedTaxon,
|
877
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
878
|
|
879
|
return null;
|
880
|
}
|
881
|
|
882
|
/**
|
883
|
* {@inheritDoc}
|
884
|
*/
|
885
|
@Override
|
886
|
public Pager<SpecimenOrObservationBase> pageFieldUnitsByAssociatedTaxon(
|
887
|
Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth,
|
888
|
Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
889
|
|
890
|
return null;
|
891
|
}
|
892
|
|
893
|
/**
|
894
|
* {@inheritDoc}
|
895
|
*/
|
896
|
@Override
|
897
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
|
898
|
Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth,
|
899
|
Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
900
|
|
901
|
return null;
|
902
|
}
|
903
|
|
904
|
/**
|
905
|
* {@inheritDoc}
|
906
|
*/
|
907
|
@Override
|
908
|
public Collection<FieldUnit> getFieldUnits(UUID specimenUuid, List<String> propertyPaths) {
|
909
|
|
910
|
return null;
|
911
|
}
|
912
|
|
913
|
/**
|
914
|
* {@inheritDoc}
|
915
|
*/
|
916
|
@Override
|
917
|
public Pager<SearchResult<SpecimenOrObservationBase>> findByFullText(
|
918
|
Class<? extends SpecimenOrObservationBase> clazz, String queryString, Rectangle boundingBox,
|
919
|
List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber,
|
920
|
List<OrderHint> orderHints, List<String> propertyPaths) throws IOException, LuceneParseException {
|
921
|
|
922
|
return null;
|
923
|
}
|
924
|
|
925
|
/**
|
926
|
* {@inheritDoc}
|
927
|
*/
|
928
|
@Override
|
929
|
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
|
930
|
Set<TaxonRelationshipEdge> includeRelationships, String taxonUUID, Integer maxDepth, Integer pageSize,
|
931
|
Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
|
932
|
|
933
|
return null;
|
934
|
}
|
935
|
|
936
|
/**
|
937
|
* {@inheritDoc}
|
938
|
*/
|
939
|
@Override
|
940
|
public UpdateResult moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
|
941
|
|
942
|
return null;
|
943
|
}
|
944
|
|
945
|
/**
|
946
|
* {@inheritDoc}
|
947
|
*/
|
948
|
@Override
|
949
|
public UpdateResult moveSequence(UUID fromUuid, UUID toUuid, UUID sequenceUuid) {
|
950
|
|
951
|
return null;
|
952
|
}
|
953
|
|
954
|
/**
|
955
|
* {@inheritDoc}
|
956
|
*/
|
957
|
@Override
|
958
|
public UpdateResult moveDerivate(UUID specimenFromUuid, UUID specimenToUuid, UUID derivateUuid) {
|
959
|
|
960
|
return null;
|
961
|
}
|
962
|
|
963
|
/**
|
964
|
* {@inheritDoc}
|
965
|
*/
|
966
|
@Override
|
967
|
public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to,
|
968
|
DerivedUnit derivate) {
|
969
|
|
970
|
return false;
|
971
|
}
|
972
|
|
973
|
/**
|
974
|
* {@inheritDoc}
|
975
|
*/
|
976
|
@Override
|
977
|
public FieldUnitDTO assembleFieldUnitDTO(FieldUnit fieldUnit, UUID associatedTaxonUuid) {
|
978
|
|
979
|
return null;
|
980
|
}
|
981
|
|
982
|
/**
|
983
|
* {@inheritDoc}
|
984
|
*/
|
985
|
@Override
|
986
|
public PreservedSpecimenDTO assemblePreservedSpecimenDTO(DerivedUnit derivedUnit) {
|
987
|
|
988
|
return null;
|
989
|
}
|
990
|
|
991
|
/**
|
992
|
* {@inheritDoc}
|
993
|
*/
|
994
|
@Override
|
995
|
public DeleteResult delete(SpecimenOrObservationBase<?> specimen, SpecimenDeleteConfigurator config) {
|
996
|
|
997
|
return null;
|
998
|
}
|
999
|
|
1000
|
/**
|
1001
|
* {@inheritDoc}
|
1002
|
*/
|
1003
|
@Override
|
1004
|
public DeleteResult delete(UUID specimenUuid, SpecimenDeleteConfigurator config) {
|
1005
|
|
1006
|
return null;
|
1007
|
}
|
1008
|
|
1009
|
/**
|
1010
|
* {@inheritDoc}
|
1011
|
*/
|
1012
|
@Override
|
1013
|
public Collection<IndividualsAssociation> listIndividualsAssociations(SpecimenOrObservationBase<?> specimen,
|
1014
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1015
|
|
1016
|
return null;
|
1017
|
}
|
1018
|
|
1019
|
/**
|
1020
|
* {@inheritDoc}
|
1021
|
*/
|
1022
|
@Override
|
1023
|
public Collection<TaxonBase<?>> listIndividualsAssociationTaxa(SpecimenOrObservationBase<?> specimen,
|
1024
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1025
|
|
1026
|
return null;
|
1027
|
}
|
1028
|
|
1029
|
/**
|
1030
|
* {@inheritDoc}
|
1031
|
*/
|
1032
|
@Override
|
1033
|
public Collection<TaxonBase<?>> listAssociatedTaxa(SpecimenOrObservationBase<?> specimen, Integer limit,
|
1034
|
Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1035
|
return null;
|
1036
|
}
|
1037
|
|
1038
|
/**
|
1039
|
* {@inheritDoc}
|
1040
|
*/
|
1041
|
@Override
|
1042
|
public Collection<TaxonBase<?>> listDeterminedTaxa(SpecimenOrObservationBase<?> specimen, Integer limit,
|
1043
|
Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1044
|
|
1045
|
return null;
|
1046
|
}
|
1047
|
|
1048
|
/**
|
1049
|
* {@inheritDoc}
|
1050
|
*/
|
1051
|
@Override
|
1052
|
public Collection<DeterminationEvent> listDeterminationEvents(SpecimenOrObservationBase<?> specimen,
|
1053
|
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1054
|
return null;
|
1055
|
}
|
1056
|
|
1057
|
/**
|
1058
|
* {@inheritDoc}
|
1059
|
*/
|
1060
|
@Override
|
1061
|
public Collection<TaxonBase<?>> listTypeDesignationTaxa(DerivedUnit specimen, Integer limit, Integer start,
|
1062
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
1063
|
|
1064
|
return null;
|
1065
|
}
|
1066
|
|
1067
|
/**
|
1068
|
* {@inheritDoc}
|
1069
|
*/
|
1070
|
@Override
|
1071
|
public Map<DerivedUnit, Collection<SpecimenTypeDesignation>> listTypeDesignations(
|
1072
|
Collection<DerivedUnit> specimens, Integer limit, Integer start, List<OrderHint> orderHints,
|
1073
|
List<String> propertyPaths) {
|
1074
|
return null;
|
1075
|
}
|
1076
|
|
1077
|
/**
|
1078
|
* {@inheritDoc}
|
1079
|
*/
|
1080
|
@Override
|
1081
|
public Collection<SpecimenTypeDesignation> listTypeDesignations(DerivedUnit specimen, Integer limit,
|
1082
|
Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
1083
|
return null;
|
1084
|
}
|
1085
|
|
1086
|
/**
|
1087
|
* {@inheritDoc}
|
1088
|
*/
|
1089
|
@Override
|
1090
|
public Collection<DescriptionBase<?>> listDescriptionsWithDescriptionSpecimen(
|
1091
|
SpecimenOrObservationBase<?> specimen, Integer limit, Integer start, List<OrderHint> orderHints,
|
1092
|
List<String> propertyPaths) {
|
1093
|
|
1094
|
return null;
|
1095
|
}
|
1096
|
|
1097
|
/**
|
1098
|
* {@inheritDoc}
|
1099
|
*/
|
1100
|
@Override
|
1101
|
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(SpecimenOrObservationBase<?> specimen) {
|
1102
|
|
1103
|
return null;
|
1104
|
}
|
1105
|
|
1106
|
/**
|
1107
|
* {@inheritDoc}
|
1108
|
*/
|
1109
|
@Override
|
1110
|
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(UUID specimenUuid) {
|
1111
|
return null;
|
1112
|
}
|
1113
|
|
1114
|
/**
|
1115
|
* {@inheritDoc}
|
1116
|
*/
|
1117
|
@Override
|
1118
|
public String getMostSignificantIdentifier(DerivedUnit derivedUnit) {
|
1119
|
return null;
|
1120
|
}
|
1121
|
|
1122
|
/**
|
1123
|
* {@inheritDoc}
|
1124
|
*/
|
1125
|
@Override
|
1126
|
public int countOccurrences(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> config) {
|
1127
|
return 0;
|
1128
|
}
|
1129
|
|
1130
|
/**
|
1131
|
* {@inheritDoc}
|
1132
|
*/
|
1133
|
@Override
|
1134
|
public List<SpecimenOrObservationBase<?>> getAllHierarchyDerivatives(SpecimenOrObservationBase<?> specimen) {
|
1135
|
return null;
|
1136
|
}
|
1137
|
|
1138
|
/**
|
1139
|
* {@inheritDoc}
|
1140
|
*/
|
1141
|
@Override
|
1142
|
public List<DerivedUnit> getAllChildDerivatives(SpecimenOrObservationBase<?> specimen) {
|
1143
|
return null;
|
1144
|
}
|
1145
|
|
1146
|
/**
|
1147
|
* {@inheritDoc}
|
1148
|
*/
|
1149
|
@Override
|
1150
|
public List<DerivedUnit> getAllChildDerivatives(UUID specimenUuid) {
|
1151
|
return null;
|
1152
|
}
|
1153
|
|
1154
|
/**
|
1155
|
* {@inheritDoc}
|
1156
|
*/
|
1157
|
@Override
|
1158
|
public <S extends SpecimenOrObservationBase> List<IdentifiedEntityDTO<S>> listByIdentifier(Class<S> clazz,
|
1159
|
String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity,
|
1160
|
List<String> propertyPaths, Integer limit) {
|
1161
|
// TODO Auto-generated method stub
|
1162
|
return null;
|
1163
|
}
|
1164
|
|
1165
|
/**
|
1166
|
* {@inheritDoc}
|
1167
|
*/
|
1168
|
@Override
|
1169
|
public List<FieldUnit> getFieldUnitsForGatheringEvent(UUID gatheringEventUuid) {
|
1170
|
return null;
|
1171
|
}
|
1172
|
|
1173
|
}
|
1174
|
|
1175
|
|
1176
|
}
|