Revision ba5dcea5
Added by Andreas Müller almost 6 years ago
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/cdmLight/out/CdmLightExportTest.java | ||
|---|---|---|
| 10 | 10 |
|
| 11 | 11 |
import java.io.BufferedReader; |
| 12 | 12 |
import java.io.ByteArrayInputStream; |
| 13 |
import java.io.File; |
|
| 14 | 13 |
import java.io.FileNotFoundException; |
| 15 | 14 |
import java.io.IOException; |
| 16 | 15 |
import java.io.InputStreamReader; |
| ... | ... | |
| 160 | 159 |
@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class, value="/eu/etaxonomy/cdm/database/BlankDataSet.xml") |
| 161 | 160 |
public void testFullTreeWithUnpublished(){
|
| 162 | 161 |
|
| 163 |
|
|
| 164 | 162 |
CdmLightExportConfigurator config = new CdmLightExportConfigurator(null); |
| 165 | 163 |
config.setTarget(TARGET.EXPORT_DATA); |
| 166 | 164 |
config.getTaxonNodeFilter().setIncludeUnpublished(true); |
| ... | ... | |
| 194 | 192 |
} |
| 195 | 193 |
Assert.assertTrue("There should be 1 synonym", count == 2);
|
| 196 | 194 |
} catch (IOException e) {
|
| 197 |
// TODO Auto-generated catch block |
|
| 198 | 195 |
e.printStackTrace(); |
| 196 |
Assert.fail("IO Exception thrown during test.");
|
|
| 199 | 197 |
} |
| 200 | 198 |
byte[] taxon = data.get(CdmLightExportTable.TAXON.getTableName()); |
| 201 | 199 |
Assert.assertNotNull("Taxon table must not be null", taxon);
|
| ... | ... | |
| 243 | 241 |
@DataSet(loadStrategy=CleanSweepInsertLoadStrategy.class, value="/eu/etaxonomy/cdm/database/BlankDataSet.xml") |
| 244 | 242 |
public void testFullData(){
|
| 245 | 243 |
|
| 246 |
File destinationFolder = null; |
|
| 247 | 244 |
CdmLightExportConfigurator config = new CdmLightExportConfigurator(null); |
| 248 | 245 |
config.setTarget(TARGET.EXPORT_DATA); |
| 249 | 246 |
|
| ... | ... | |
| 270 | 267 |
} |
| 271 | 268 |
Assert.assertTrue("There should be 4 references", count == 5);
|
| 272 | 269 |
try{
|
| 273 |
stream = new ByteArrayInputStream(data.get(CdmLightExportTable.SYNONYM.getTableName())); |
|
| 274 |
Assert.fail("There should not be a synonym table, because the only synonym is not public.");
|
|
| 270 |
stream = new ByteArrayInputStream(data.get(CdmLightExportTable.SYNONYM.getTableName()));
|
|
| 271 |
Assert.fail("There should not be a synonym table, because the only synonym is not public.");
|
|
| 275 | 272 |
}catch(NullPointerException e){
|
| 276 |
|
|
| 273 |
//OK, should be thrown |
|
| 277 | 274 |
} |
| 278 | 275 |
|
| 279 | 276 |
} catch (IOException e) {
|
| 280 |
// TODO Auto-generated catch block |
|
| 281 |
e.printStackTrace(); |
|
| 277 |
throw new RuntimeException(e); |
|
| 282 | 278 |
} |
| 283 |
|
|
| 284 |
|
|
| 285 | 279 |
} |
| 286 | 280 |
|
| 287 | 281 |
/** |
| ... | ... | |
| 301 | 295 |
TaxonName familyName = parser.parseReferencedName("Family L., Sp. Pl. 3: 22. 1752",
|
| 302 | 296 |
NomenclaturalCode.ICNAFP, Rank.FAMILY()); |
| 303 | 297 |
setUuid(familyName,"e983cc5e-4c77-4c80-8cb0-73d43df31ef7"); |
| 304 |
setUuid((Reference)familyName.getNomenclaturalReference(), "b0dd7f4a-0c7f-4372-bc5d-3b676363bc63");
|
|
| 298 |
setUuid(familyName.getNomenclaturalReference(), "b0dd7f4a-0c7f-4372-bc5d-3b676363bc63"); |
|
| 305 | 299 |
Taxon family = Taxon.NewInstance(familyName, sec1); |
| 306 | 300 |
setUuid(family,"3162e136-f2e2-4f9a-9010-3f35908fbae1"); |
| 307 | 301 |
TaxonNode node1 = classification.addChildTaxon(family, sec1, "22"); |
| ... | ... | |
| 311 | 305 |
TaxonName genusName = parser.parseReferencedName("Genus Humb., The book of botany 3: 22. 1804",
|
| 312 | 306 |
NomenclaturalCode.ICNAFP, Rank.GENUS()); |
| 313 | 307 |
setUuid(genusName,"5e83cc5e-4c77-4d80-8cb0-73d63df35ee3"); |
| 314 |
setUuid((Reference)genusName.getNomenclaturalReference(), "5ed27f4a-6c7f-4372-bc5d-3b67636abc52");
|
|
| 308 |
setUuid(genusName.getNomenclaturalReference(), "5ed27f4a-6c7f-4372-bc5d-3b67636abc52"); |
|
| 315 | 309 |
Taxon genus = Taxon.NewInstance(genusName, sec1); |
| 316 | 310 |
setUuid(genus,"3f52e136-f2e1-4f9a-9010-2f35908fbd39"); |
| 317 | 311 |
|
| ... | ... | |
| 323 | 317 |
TaxonName speciesName = parser.parseReferencedName("Genus species Mill., The book of botany 3: 22. 1804",
|
| 324 | 318 |
NomenclaturalCode.ICNAFP, Rank.SPECIES()); |
| 325 | 319 |
setUuid(speciesName,"f983cc5e-4c77-4c80-8cb0-73d43df31ee9"); |
| 326 |
setUuid((Reference)speciesName.getNomenclaturalReference(), "a0dd7f4a-0c7f-4372-bc5d-3b676363bc0e");
|
|
| 320 |
setUuid(speciesName.getNomenclaturalReference(), "a0dd7f4a-0c7f-4372-bc5d-3b676363bc0e"); |
|
| 327 | 321 |
Taxon species = Taxon.NewInstance(speciesName, sec1); |
| 328 | 322 |
setUuid(species,"9182e136-f2e2-4f9a-9010-3f35908fb5e0"); |
| 329 | 323 |
TaxonName synonymName = parser.parseReferencedName("Genus synonym Mill., The book of botany 3: 22. 1804", NomenclaturalCode.ICNAFP, Rank.SPECIES());
|
| ... | ... | |
| 340 | 334 |
TaxonName subspeciesName = parser.parseReferencedName("Genus species subsp. subspec Mill., The book of botany 3: 22. 1804",
|
| 341 | 335 |
NomenclaturalCode.ICNAFP, Rank.SUBSPECIES()); |
| 342 | 336 |
setUuid(subspeciesName,"3483cc5e-4c77-4c80-8cb0-73d43df31ee3"); |
| 343 |
setUuid((Reference)subspeciesName.getNomenclaturalReference(), "b8dd7f4a-0c7f-4372-bc5d-3b676363bc0f");
|
|
| 337 |
setUuid(subspeciesName.getNomenclaturalReference(), "b8dd7f4a-0c7f-4372-bc5d-3b676363bc0f"); |
|
| 344 | 338 |
|
| 345 | 339 |
Taxon subspecies = Taxon.NewInstance(subspeciesName, sec1); |
| 346 | 340 |
setUuid(subspecies, "b2c86698-500e-4efb-b9ae-6bb6e701d4bc"); |
Also available in: Unified diff
ref #7334 adapt DwCA and CDM light export to new pro parte synonym handling, also add misapplied name handling to CDM light