Revision b1c5e27c
Added by Andreas Kohlbecker over 8 years ago
| cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DocUtils.java | ||
|---|---|---|
| 7 | 7 |
import java.io.InputStream; |
| 8 | 8 |
import java.io.Reader; |
| 9 | 9 |
import java.io.UnsupportedEncodingException; |
| 10 |
import java.util.HashMap; |
|
| 11 |
import java.util.Map; |
|
| 12 |
|
|
| 13 | 10 |
import org.apache.maven.doxia.module.apt.AptParser; |
| 14 | 11 |
import org.apache.maven.doxia.module.xhtml.XhtmlSinkFactory; |
| 15 | 12 |
import org.apache.maven.doxia.parser.ParseException; |
| cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/GeneralParserTest.java | ||
|---|---|---|
| 3 | 3 |
*/ |
| 4 | 4 |
package eu.etaxonomy.cdm.common; |
| 5 | 5 |
|
| 6 |
import static org.junit.Assert.*; |
|
| 7 |
|
|
| 8 | 6 |
import org.junit.Assert; |
| 9 | 7 |
import org.junit.Before; |
| 10 | 8 |
import org.junit.Test; |
| cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java | ||
|---|---|---|
| 27 | 27 |
import eu.etaxonomy.cdm.ext.common.SchemaAdapterBase; |
| 28 | 28 |
import eu.etaxonomy.cdm.model.agent.Team; |
| 29 | 29 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 30 |
import eu.etaxonomy.cdm.model.common.TimePeriod; |
|
| 31 | 30 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 32 | 31 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| 33 | 32 |
import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser; |
| cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java | ||
|---|---|---|
| 27 | 27 |
import eu.etaxonomy.cdm.ext.common.SchemaAdapterBase; |
| 28 | 28 |
import eu.etaxonomy.cdm.model.agent.Team; |
| 29 | 29 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 30 |
import eu.etaxonomy.cdm.model.common.TimePeriod; |
|
| 31 | 30 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 32 | 31 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| 33 | 32 |
import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser; |
| cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java | ||
|---|---|---|
| 10 | 10 |
import org.junit.Assert; |
| 11 | 11 |
import org.junit.Before; |
| 12 | 12 |
import org.junit.BeforeClass; |
| 13 |
import org.junit.Ignore; |
|
| 14 | 13 |
import org.junit.Test; |
| 15 | 14 |
|
| 16 | 15 |
import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
| cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapperTest.java | ||
|---|---|---|
| 19 | 19 |
|
| 20 | 20 |
import org.apache.http.client.ClientProtocolException; |
| 21 | 21 |
import org.apache.log4j.Logger; |
| 22 |
import org.junit.Ignore; |
|
| 23 | 22 |
import org.junit.Test; |
| 24 | 23 |
|
| 25 | 24 |
import eu.etaxonomy.cdm.common.UriUtils; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/IIoConfigurator.java | ||
|---|---|---|
| 10 | 10 |
|
| 11 | 11 |
import org.springframework.security.authentication.UsernamePasswordAuthenticationToken; |
| 12 | 12 |
|
| 13 |
import eu.etaxonomy.cdm.api.application.CdmApplicationController; |
|
| 14 | 13 |
import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
| 15 | 14 |
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor; |
| 16 | 15 |
import eu.etaxonomy.cdm.config.Configuration; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportDescriptionElementCreationMapperBase.java | ||
|---|---|---|
| 17 | 17 |
import org.apache.commons.lang.StringUtils; |
| 18 | 18 |
import org.apache.log4j.Logger; |
| 19 | 19 |
|
| 20 |
import eu.etaxonomy.cdm.common.CdmUtils; |
|
| 21 | 20 |
import eu.etaxonomy.cdm.io.common.DbImportStateBase; |
| 22 | 21 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 23 | 22 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportExtensionTypeCreationMapper.java | ||
|---|---|---|
| 19 | 19 |
import eu.etaxonomy.cdm.io.common.DbImportStateBase; |
| 20 | 20 |
import eu.etaxonomy.cdm.model.common.ExtensionType; |
| 21 | 21 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity; |
| 22 |
import eu.etaxonomy.cdm.model.common.VersionableEntity; |
|
| 23 | 22 |
|
| 24 | 23 |
/** |
| 25 | 24 |
* This class retrives or creates an existing or a new extension type. |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportFeatureCreationMapper.java | ||
|---|---|---|
| 17 | 17 |
import org.apache.log4j.Logger; |
| 18 | 18 |
|
| 19 | 19 |
import eu.etaxonomy.cdm.io.common.DbImportStateBase; |
| 20 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
|
| 21 | 20 |
import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
| 22 | 21 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 23 | 22 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportImageCreationMapper.java | ||
|---|---|---|
| 23 | 23 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
| 24 | 24 |
import eu.etaxonomy.cdm.model.description.TextData; |
| 25 | 25 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 26 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
|
| 27 | 26 |
|
| 28 | 27 |
/** |
| 29 | 28 |
* @author a.mueller |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportLsidMapper.java | ||
|---|---|---|
| 11 | 11 |
package eu.etaxonomy.cdm.io.common.mapping; |
| 12 | 12 |
|
| 13 | 13 |
import java.sql.SQLException; |
| 14 |
import java.util.UUID; |
|
| 15 |
|
|
| 16 | 14 |
import org.apache.log4j.Logger; |
| 17 | 15 |
|
| 18 | 16 |
import com.ibm.lsid.MalformedLSIDException; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/DbImportObjectCreationMapperBase.java | ||
|---|---|---|
| 17 | 17 |
import org.apache.log4j.Logger; |
| 18 | 18 |
|
| 19 | 19 |
import eu.etaxonomy.cdm.io.common.DbImportStateBase; |
| 20 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
|
| 21 | 20 |
import eu.etaxonomy.cdm.model.common.IOriginalSource; |
| 22 | 21 |
import eu.etaxonomy.cdm.model.common.ISourceable; |
| 23 | 22 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvExportBaseRedlist.java | ||
|---|---|---|
| 22 | 22 |
import java.util.Set; |
| 23 | 23 |
import java.util.UUID; |
| 24 | 24 |
|
| 25 |
import javax.swing.border.EmptyBorder; |
|
| 26 | 25 |
import javax.xml.stream.XMLOutputFactory; |
| 27 | 26 |
import javax.xml.stream.XMLStreamException; |
| 28 | 27 |
import javax.xml.stream.XMLStreamWriter; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvTaxExportStateRedlist.java | ||
|---|---|---|
| 20 | 20 |
import org.apache.log4j.Logger; |
| 21 | 21 |
|
| 22 | 22 |
import eu.etaxonomy.cdm.io.common.XmlExportState; |
| 23 |
import eu.etaxonomy.cdm.io.dwca.out.DwcaMetaDataRecord; |
|
| 24 | 23 |
|
| 25 | 24 |
/** |
| 26 | 25 |
* @author a.mueller |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/in/GbifReferenceCsv2CdmConverter.java | ||
|---|---|---|
| 27 | 27 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 28 | 28 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 29 | 29 |
import eu.etaxonomy.cdm.model.common.LSID; |
| 30 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
|
| 31 | 30 |
import eu.etaxonomy.cdm.model.common.TimePeriod; |
| 32 | 31 |
import eu.etaxonomy.cdm.model.description.DescriptionElementSource; |
| 33 | 32 |
import eu.etaxonomy.cdm.model.description.Feature; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/out/DwcaRecordBase.java | ||
|---|---|---|
| 14 | 14 |
import java.net.URISyntaxException; |
| 15 | 15 |
import java.util.HashMap; |
| 16 | 16 |
import java.util.HashSet; |
| 17 |
import java.util.List; |
|
| 18 | 17 |
import java.util.Map; |
| 19 | 18 |
import java.util.Set; |
| 20 | 19 |
import java.util.UUID; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/out/DwcaResourceRelationRecord.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
import java.io.PrintWriter; |
| 13 | 13 |
import java.net.URISyntaxException; |
| 14 |
import java.util.List; |
|
| 15 | 14 |
import java.util.Set; |
| 16 | 15 |
import java.util.UUID; |
| 17 | 16 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/out/DwcaVernacularExport.java | ||
|---|---|---|
| 21 | 21 |
import org.springframework.stereotype.Component; |
| 22 | 22 |
import org.springframework.transaction.TransactionStatus; |
| 23 | 23 |
|
| 24 |
import eu.etaxonomy.cdm.common.CdmUtils; |
|
| 25 | 24 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 26 |
import eu.etaxonomy.cdm.model.common.IOriginalSource; |
|
| 27 |
import eu.etaxonomy.cdm.model.common.ISourceable; |
|
| 28 |
import eu.etaxonomy.cdm.model.common.OriginalSourceBase; |
|
| 29 | 25 |
import eu.etaxonomy.cdm.model.description.CommonTaxonName; |
| 30 | 26 |
import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
| 31 | 27 |
import eu.etaxonomy.cdm.model.description.Feature; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/stream/ExcelMapReader.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
import java.util.HashMap; |
| 13 | 13 |
import java.util.List; |
| 14 |
import java.util.Set; |
|
| 15 |
|
|
| 16 | 14 |
import eu.etaxonomy.cdm.io.common.ObservableBase; |
| 17 |
import eu.etaxonomy.cdm.io.common.events.IIoObserver; |
|
| 18 | 15 |
import eu.etaxonomy.cdm.io.dwca.TermUri; |
| 19 | 16 |
import eu.etaxonomy.cdm.io.stream.IItemStream; |
| 20 | 17 |
import eu.etaxonomy.cdm.io.stream.StreamItem; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/stream/ExcelToStreamConverter.java | ||
|---|---|---|
| 19 | 19 |
import org.apache.commons.lang.StringUtils; |
| 20 | 20 |
import org.apache.http.HttpException; |
| 21 | 21 |
import org.apache.log4j.Logger; |
| 22 |
import org.apache.poi.hssf.usermodel.HSSFSheet; |
|
| 23 | 22 |
import org.apache.poi.openxml4j.exceptions.InvalidFormatException; |
| 24 | 23 |
import org.apache.poi.ss.usermodel.Sheet; |
| 25 | 24 |
import org.apache.poi.ss.usermodel.Workbook; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitRow.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.excel.taxa; |
| 11 | 11 |
|
| 12 | 12 |
import java.util.ArrayList; |
| 13 |
import java.util.HashMap; |
|
| 14 | 13 |
import java.util.List; |
| 15 |
import java.util.Map; |
|
| 16 |
import java.util.Set; |
|
| 17 | 14 |
import java.util.TreeMap; |
| 18 |
import java.util.UUID; |
|
| 19 |
|
|
| 20 | 15 |
import eu.etaxonomy.cdm.io.excel.common.ExcelRowBase; |
| 21 |
import eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase.SourceType; |
|
| 22 | 16 |
|
| 23 | 17 |
/** |
| 24 | 18 |
* @author a.babadshanjan |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/Error.java | ||
|---|---|---|
| 11 | 11 |
import javax.xml.bind.annotation.XmlRootElement; |
| 12 | 12 |
import javax.xml.bind.annotation.XmlType; |
| 13 | 13 |
|
| 14 |
import org.springframework.core.annotation.AnnotationUtils; |
|
| 15 |
|
|
| 16 | 14 |
@XmlAccessorType(XmlAccessType.FIELD) |
| 17 | 15 |
@XmlType(name = "Error", propOrder = {
|
| 18 | 16 |
"code", |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupDocumentImportNoComponent.java | ||
|---|---|---|
| 30 | 30 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 31 | 31 |
import eu.etaxonomy.cdm.model.common.ExtensionType; |
| 32 | 32 |
import eu.etaxonomy.cdm.model.common.Language; |
| 33 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
|
| 34 |
import eu.etaxonomy.cdm.model.common.TermVocabulary; |
|
| 35 |
import eu.etaxonomy.cdm.model.description.CommonTaxonName; |
|
| 36 |
import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
|
| 37 |
import eu.etaxonomy.cdm.model.description.Distribution; |
|
| 38 | 33 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 39 | 34 |
import eu.etaxonomy.cdm.model.description.PolytomousKey; |
| 40 | 35 |
import eu.etaxonomy.cdm.model.description.PolytomousKeyNode; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pilotOutputHtml/PilotOutputDescriptionExporter.java | ||
|---|---|---|
| 24 | 24 |
import eu.etaxonomy.cdm.io.common.CdmExportBase; |
| 25 | 25 |
import eu.etaxonomy.cdm.io.common.ICdmExport; |
| 26 | 26 |
import eu.etaxonomy.cdm.io.common.IExportConfigurator; |
| 27 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
|
| 28 | 27 |
import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer; |
| 29 | 28 |
import eu.etaxonomy.cdm.io.sdd.out.SDDDataSet; |
| 30 | 29 |
import eu.etaxonomy.cdm.model.agent.AgentBase; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/EndNoteImportBase.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
import org.apache.log4j.Logger; |
| 13 | 13 |
import org.jdom.Element; |
| 14 |
import org.jdom.Namespace; |
|
| 15 |
|
|
| 16 | 14 |
import eu.etaxonomy.cdm.io.common.CdmImportBase; |
| 17 | 15 |
|
| 18 | 16 |
/** |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/ikeyplus/IkeyPlusImportConfigurator.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.sdd.ikeyplus; |
| 11 | 11 |
|
| 12 | 12 |
import java.net.URI; |
| 13 |
import java.net.URL; |
|
| 14 |
|
|
| 15 | 13 |
import org.apache.log4j.Logger; |
| 16 | 14 |
|
| 17 | 15 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
| 18 | 16 |
import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase; |
| 19 |
import eu.etaxonomy.cdm.io.common.ImportStateBase; |
|
| 20 | 17 |
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer; |
| 21 |
import eu.etaxonomy.cdm.io.sdd.in.SDDImport; |
|
| 22 |
import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator; |
|
| 23 | 18 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 24 | 19 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| 25 | 20 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/in/SDDImportConfigurator.java | ||
|---|---|---|
| 22 | 22 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
| 23 | 23 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
| 24 | 24 |
import eu.etaxonomy.cdm.io.common.IMatchingImportConfigurator; |
| 25 |
import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase; |
|
| 26 | 25 |
import eu.etaxonomy.cdm.io.common.XmlImportConfiguratorBase; |
| 27 | 26 |
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer; |
| 28 | 27 |
import eu.etaxonomy.cdm.io.sdd.SDDTransformer; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/out/SDDExportConfigurator.java | ||
|---|---|---|
| 14 | 14 |
import org.apache.log4j.Logger; |
| 15 | 15 |
|
| 16 | 16 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
| 17 |
import eu.etaxonomy.cdm.io.common.ExportStateBase; |
|
| 18 | 17 |
import eu.etaxonomy.cdm.io.common.XmlExportConfiguratorBase; |
| 19 | 18 |
import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer; |
| 20 | 19 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXDescriptionImport.java | ||
|---|---|---|
| 32 | 32 |
import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
| 33 | 33 |
import eu.etaxonomy.cdm.model.common.TermVocabulary; |
| 34 | 34 |
import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
| 35 |
import eu.etaxonomy.cdm.model.description.DescriptionElementSource; |
|
| 36 | 35 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 37 | 36 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
| 38 | 37 |
import eu.etaxonomy.cdm.model.description.TextData; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXImportState.java | ||
|---|---|---|
| 13 | 13 |
import org.apache.log4j.Logger; |
| 14 | 14 |
|
| 15 | 15 |
import eu.etaxonomy.cdm.io.common.CdmImportBase; |
| 16 |
import eu.etaxonomy.cdm.io.common.CdmIoBase; |
|
| 17 | 16 |
import eu.etaxonomy.cdm.io.common.ImportStateBase; |
| 18 | 17 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 19 | 18 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmTextElementMapper.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsrdf; |
| 11 | 11 |
|
| 12 | 12 |
import org.apache.log4j.Logger; |
| 13 |
import org.jdom.Content; |
|
| 14 |
import org.jdom.Element; |
|
| 15 |
import org.jdom.Namespace; |
|
| 16 |
|
|
| 17 | 13 |
import com.hp.hpl.jena.rdf.model.Resource; |
| 18 | 14 |
import com.hp.hpl.jena.rdf.model.Statement; |
| 19 | 15 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmUnclearMapper.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsrdf; |
| 11 | 11 |
|
| 12 | 12 |
import org.apache.log4j.Logger; |
| 13 |
import org.jdom.Content; |
|
| 14 |
import org.jdom.Element; |
|
| 15 |
import org.jdom.Namespace; |
|
| 16 |
|
|
| 17 | 13 |
import com.hp.hpl.jena.rdf.model.Resource; |
| 18 | 14 |
import com.hp.hpl.jena.rdf.model.Statement; |
| 19 | 15 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfImportState.java | ||
|---|---|---|
| 12 | 12 |
|
| 13 | 13 |
import org.apache.log4j.Logger; |
| 14 | 14 |
|
| 15 |
import eu.etaxonomy.cdm.io.common.CdmImportBase; |
|
| 16 |
import eu.etaxonomy.cdm.io.common.CdmIoBase; |
|
| 17 | 15 |
import eu.etaxonomy.cdm.io.common.ImportStateBase; |
| 18 | 16 |
|
| 19 | 17 |
/** |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfReferenceImport.java | ||
|---|---|---|
| 19 | 19 |
import java.util.Set; |
| 20 | 20 |
|
| 21 | 21 |
import org.apache.log4j.Logger; |
| 22 |
import org.jdom.Element; |
|
| 23 | 22 |
import org.jdom.Namespace; |
| 24 | 23 |
import org.springframework.stereotype.Component; |
| 25 | 24 |
|
| 26 | 25 |
import com.hp.hpl.jena.rdf.model.Model; |
| 27 |
import com.hp.hpl.jena.rdf.model.Resource; |
|
| 28 | 26 |
import com.hp.hpl.jena.rdf.model.Statement; |
| 29 | 27 |
|
| 30 |
import eu.etaxonomy.cdm.common.CdmUtils; |
|
| 31 |
import eu.etaxonomy.cdm.common.XmlHelp; |
|
| 32 | 28 |
import eu.etaxonomy.cdm.io.common.mapping.berlinModel.CdmOneToManyMapper; |
| 33 | 29 |
import eu.etaxonomy.cdm.io.common.ICdmIO; |
| 34 | 30 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
| ... | ... | |
| 36 | 32 |
import eu.etaxonomy.cdm.io.common.MapWrapper; |
| 37 | 33 |
import eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase; |
| 38 | 34 |
import eu.etaxonomy.cdm.io.common.mapping.IRdfMapper; |
| 39 |
import eu.etaxonomy.cdm.io.common.mapping.IXmlMapper; |
|
| 40 | 35 |
import eu.etaxonomy.cdm.io.tcsxml.CdmSingleAttributeXmlMapperBase; |
| 41 |
import eu.etaxonomy.cdm.model.agent.Team; |
|
| 42 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
|
| 43 |
import eu.etaxonomy.cdm.model.common.Marker; |
|
| 44 |
import eu.etaxonomy.cdm.model.common.MarkerType; |
|
| 45 |
import eu.etaxonomy.cdm.model.common.TimePeriod; |
|
| 46 |
import eu.etaxonomy.cdm.model.reference.IArticle; |
|
| 47 |
import eu.etaxonomy.cdm.model.reference.IBookSection; |
|
| 48 | 36 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 49 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
|
| 50 |
import eu.etaxonomy.cdm.model.reference.ReferenceType; |
|
| 51 |
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
|
| 52 | 37 |
|
| 53 | 38 |
/** |
| 54 | 39 |
* @author a.mueller |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameImport.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsrdf; |
| 11 | 11 |
|
| 12 |
import java.io.IOException; |
|
| 13 | 12 |
import java.io.InputStream; |
| 14 |
import java.util.List; |
|
| 15 | 13 |
import java.util.Set; |
| 16 | 14 |
|
| 17 | 15 |
import org.apache.log4j.Logger; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameRelationsImport.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsrdf; |
| 11 | 11 |
|
| 12 | 12 |
import java.util.HashSet; |
| 13 |
import java.util.List; |
|
| 14 | 13 |
import java.util.Set; |
| 15 | 14 |
|
| 16 | 15 |
import org.apache.log4j.Logger; |
| 17 |
import org.jdom.Attribute; |
|
| 18 |
import org.jdom.Element; |
|
| 19 | 16 |
import org.jdom.Namespace; |
| 20 | 17 |
import org.springframework.stereotype.Component; |
| 21 | 18 |
|
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonRelationsImport.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsrdf; |
| 11 | 11 |
|
| 12 | 12 |
import java.util.HashSet; |
| 13 |
import java.util.List; |
|
| 14 | 13 |
import java.util.Set; |
| 15 | 14 |
|
| 16 | 15 |
import org.apache.log4j.Logger; |
| ... | ... | |
| 20 | 19 |
|
| 21 | 20 |
import com.hp.hpl.jena.rdf.model.Model; |
| 22 | 21 |
|
| 23 |
import eu.etaxonomy.cdm.common.XmlHelp; |
|
| 24 | 22 |
import eu.etaxonomy.cdm.io.common.ICdmIO; |
| 25 | 23 |
import eu.etaxonomy.cdm.io.common.MapWrapper; |
| 26 |
import eu.etaxonomy.cdm.model.common.RelationshipTermBase; |
|
| 27 | 24 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
| 28 | 25 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 29 | 26 |
import eu.etaxonomy.cdm.model.taxon.Synonym; |
| ... | ... | |
| 33 | 30 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 34 | 31 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType; |
| 35 | 32 |
import eu.etaxonomy.cdm.model.taxon.Classification; |
| 36 |
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
|
| 37 | 33 |
|
| 38 | 34 |
|
| 39 | 35 |
/** |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/DefaultTcsXmlPlaceholders.java | ||
|---|---|---|
| 14 | 14 |
import org.jdom.Namespace; |
| 15 | 15 |
|
| 16 | 16 |
import eu.etaxonomy.cdm.common.ResultWrapper; |
| 17 |
import eu.etaxonomy.cdm.common.XmlHelp; |
|
| 18 | 17 |
import eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator; |
| 19 | 18 |
import eu.etaxonomy.cdm.model.common.TimePeriod; |
| 20 | 19 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTransformer.java | ||
|---|---|---|
| 14 | 14 |
import eu.etaxonomy.cdm.common.ResultWrapper; |
| 15 | 15 |
import eu.etaxonomy.cdm.model.common.RelationshipTermBase; |
| 16 | 16 |
import eu.etaxonomy.cdm.model.name.HybridRelationshipType; |
| 17 |
import eu.etaxonomy.cdm.model.name.NameRelationshipType; |
|
| 18 | 17 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
| 19 | 18 |
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType; |
| 20 | 19 |
import eu.etaxonomy.cdm.model.name.Rank; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/in/TcsXmlMetaDataImport.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.io.tcsxml.in; |
| 11 | 11 |
|
| 12 |
import java.util.Map; |
|
| 13 |
|
|
| 14 | 12 |
import org.apache.log4j.Logger; |
| 15 | 13 |
import org.jdom.Element; |
| 16 | 14 |
import org.jdom.Namespace; |
| ... | ... | |
| 19 | 17 |
import eu.etaxonomy.cdm.common.DoubleResult; |
| 20 | 18 |
import eu.etaxonomy.cdm.common.XmlHelp; |
| 21 | 19 |
import eu.etaxonomy.cdm.io.common.ICdmIO; |
| 22 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
|
| 23 |
import eu.etaxonomy.cdm.io.common.MapWrapper; |
|
| 24 |
|
|
| 25 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
|
| 26 | 20 |
|
| 27 | 21 |
/** |
| 28 | 22 |
* @author a.mueller |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/in/TcsXmlTaxonImport.java | ||
|---|---|---|
| 39 | 39 |
import eu.etaxonomy.cdm.model.name.Rank; |
| 40 | 40 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
| 41 | 41 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 42 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
|
| 43 | 42 |
import eu.etaxonomy.cdm.model.taxon.Synonym; |
| 44 | 43 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 45 | 44 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/in/TcsXmlTaxonNameRelationsImport.java | ||
|---|---|---|
| 27 | 27 |
import eu.etaxonomy.cdm.io.common.ICdmIO; |
| 28 | 28 |
import eu.etaxonomy.cdm.io.common.MapWrapper; |
| 29 | 29 |
import eu.etaxonomy.cdm.io.tcsxml.TcsXmlTransformer; |
| 30 |
import eu.etaxonomy.cdm.model.name.NameRelationship; |
|
| 31 | 30 |
import eu.etaxonomy.cdm.model.name.NameRelationshipType; |
| 32 | 31 |
import eu.etaxonomy.cdm.model.name.NomenclaturalStatus; |
| 33 | 32 |
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType; |
| 34 | 33 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
| 35 |
import eu.etaxonomy.cdm.model.reference.INomenclaturalReference; |
|
| 36 | 34 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 37 | 35 |
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
| 38 | 36 |
|
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/markup/FeatureSorterTest.java | ||
|---|---|---|
| 1 | 1 |
package eu.etaxonomy.cdm.io.markup; |
| 2 | 2 |
|
| 3 |
import static org.junit.Assert.*; |
|
| 4 |
|
|
| 5 | 3 |
import java.util.ArrayList; |
| 6 |
import java.util.Arrays; |
|
| 7 |
import java.util.Collection; |
|
| 8 |
import java.util.Collections; |
|
| 9 | 4 |
import java.util.HashMap; |
| 10 | 5 |
import java.util.HashSet; |
| 11 | 6 |
import java.util.List; |
| ... | ... | |
| 18 | 13 |
import org.junit.BeforeClass; |
| 19 | 14 |
import org.junit.Test; |
| 20 | 15 |
|
| 21 |
import com.google.common.collect.Lists; |
|
| 22 |
|
|
| 23 | 16 |
import eu.etaxonomy.cdm.io.markup.FeatureSorter; |
| 24 | 17 |
|
| 25 | 18 |
public class FeatureSorterTest {
|
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/sdd/in/SDDImportBenchmark.java | ||
|---|---|---|
| 20 | 20 |
import org.junit.Before; |
| 21 | 21 |
import org.junit.Rule; |
| 22 | 22 |
import org.junit.Test; |
| 23 |
import org.junit.rules.MethodRule; |
|
| 24 | 23 |
import org.junit.rules.TestRule; |
| 25 | 24 |
import org.unitils.spring.annotation.SpringBeanByType; |
| 26 | 25 |
|
| cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.io.specimen.excel.in; |
| 11 | 11 |
|
| 12 |
import static org.junit.Assert.assertEquals; |
|
| 13 | 12 |
import static org.junit.Assert.assertNotNull; |
| 14 |
import static org.junit.Assert.assertTrue; |
|
| 15 |
|
|
| 16 | 13 |
import java.io.FileNotFoundException; |
| 17 | 14 |
import java.net.URISyntaxException; |
| 18 | 15 |
import java.net.URL; |
| 19 | 16 |
|
| 20 | 17 |
import org.junit.Before; |
| 21 | 18 |
import org.junit.Test; |
| 22 |
import org.unitils.dbunit.annotation.DataSet; |
|
| 23 |
|
|
| 24 | 19 |
import org.unitils.spring.annotation.SpringBeanByName; |
| 25 | 20 |
import org.unitils.spring.annotation.SpringBeanByType; |
| 26 | 21 |
|
| ... | ... | |
| 28 | 23 |
import eu.etaxonomy.cdm.api.service.IOccurrenceService; |
| 29 | 24 |
import eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport; |
| 30 | 25 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator; |
| 31 |
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit; |
|
| 32 |
import eu.etaxonomy.cdm.model.occurrence.FieldUnit; |
|
| 33 |
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase; |
|
| 34 | 26 |
import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest; |
| 35 |
import eu.etaxonomy.cdm.test.unitils.CleanSweepInsertLoadStrategy; |
|
| 36 | 27 |
|
| 37 | 28 |
/** |
| 38 | 29 |
* @author a.mueller |
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/PartialUserType.java | ||
|---|---|---|
| 19 | 19 |
import org.hibernate.engine.spi.SessionImplementor; |
| 20 | 20 |
import org.hibernate.type.StandardBasicTypes; |
| 21 | 21 |
import org.hibernate.usertype.UserType; |
| 22 |
import org.jadira.usertype.dateandtime.shared.spi.AbstractSingleColumnUserType; |
|
| 23 | 22 |
import org.jadira.usertype.dateandtime.shared.spi.AbstractUserType; |
| 24 |
import org.jadira.usertype.dateandtime.shared.spi.ColumnMapper; |
|
| 25 | 23 |
import org.joda.time.DateTimeFieldType; |
| 26 | 24 |
import org.joda.time.Partial; |
| 27 | 25 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/WSDLDefinitionUserType.java | ||
|---|---|---|
| 30 | 30 |
import org.hibernate.engine.spi.SessionImplementor; |
| 31 | 31 |
import org.hibernate.type.StandardBasicTypes; |
| 32 | 32 |
import org.hibernate.usertype.UserType; |
| 33 |
import org.jadira.usertype.dateandtime.shared.spi.AbstractSingleColumnUserType; |
|
| 34 | 33 |
import org.jadira.usertype.dateandtime.shared.spi.AbstractUserType; |
| 35 |
import org.jadira.usertype.dateandtime.shared.spi.ColumnMapper; |
|
| 36 |
|
|
| 37 | 34 |
import com.ibm.wsdl.factory.WSDLFactoryImpl; |
| 38 | 35 |
|
| 39 | 36 |
import eu.etaxonomy.cdm.model.common.LSIDWSDLLocator; |
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/MultilanguageTextAdapter.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.jaxb; |
| 11 | 11 |
|
| 12 |
import java.util.HashMap; |
|
| 13 | 12 |
import java.util.Map; |
| 14 | 13 |
import java.util.concurrent.ConcurrentHashMap; |
| 15 | 14 |
|
| ... | ... | |
| 17 | 16 |
|
| 18 | 17 |
import eu.etaxonomy.cdm.model.common.Language; |
| 19 | 18 |
import eu.etaxonomy.cdm.model.common.LanguageString; |
| 20 |
import eu.etaxonomy.cdm.model.common.MultilanguageTextHelper; |
|
| 21 | 19 |
|
| 22 | 20 |
/** |
| 23 | 21 |
* @author a.babadshanjan |
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/GrantedAuthorityImpl.java | ||
|---|---|---|
| 18 | 18 |
import javax.xml.bind.annotation.XmlRootElement; |
| 19 | 19 |
import javax.xml.bind.annotation.XmlType; |
| 20 | 20 |
|
| 21 |
import org.apache.commons.lang.StringUtils; |
|
| 22 | 21 |
import org.apache.log4j.Logger; |
| 23 | 22 |
import org.springframework.security.core.GrantedAuthority; |
| 24 | 23 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Marker.java | ||
|---|---|---|
| 25 | 25 |
|
| 26 | 26 |
import org.apache.log4j.Logger; |
| 27 | 27 |
import org.hibernate.annotations.Any; |
| 28 |
import org.hibernate.annotations.Cascade; |
|
| 29 |
import org.hibernate.annotations.CascadeType; |
|
| 30 | 28 |
import org.hibernate.envers.Audited; |
| 31 | 29 |
import org.hibernate.envers.NotAudited; |
| 32 | 30 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IIdentificationKey.java | ||
|---|---|---|
| 12 | 12 |
|
| 13 | 13 |
import java.util.Set; |
| 14 | 14 |
|
| 15 |
import org.apache.poi.poifs.filesystem.OfficeXmlFileException; |
|
| 16 |
|
|
| 17 | 15 |
import eu.etaxonomy.cdm.model.common.DefinedTerm; |
| 18 | 16 |
import eu.etaxonomy.cdm.model.location.NamedArea; |
| 19 | 17 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmPreference.java | ||
|---|---|---|
| 15 | 15 |
import javax.persistence.Embeddable; |
| 16 | 16 |
import javax.persistence.EmbeddedId; |
| 17 | 17 |
import javax.persistence.Entity; |
| 18 |
import javax.validation.constraints.Size; |
|
| 19 |
|
|
| 20 | 18 |
import org.hibernate.validator.constraints.Length; |
| 21 | 19 |
|
| 22 | 20 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/TaxonNameComparator.java | ||
|---|---|---|
| 3 | 3 |
import java.io.Serializable; |
| 4 | 4 |
import java.util.Comparator; |
| 5 | 5 |
|
| 6 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
|
| 7 |
|
|
| 8 | 6 |
public class TaxonNameComparator implements Comparator<TaxonNameBase>, Serializable {
|
| 9 | 7 |
private static final long serialVersionUID = -1007495803322700031L; |
| 10 | 8 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/HTMLTagRules.java | ||
|---|---|---|
| 4 | 4 |
package eu.etaxonomy.cdm.strategy.cache; |
| 5 | 5 |
|
| 6 | 6 |
import java.util.ArrayList; |
| 7 |
import java.util.HashSet; |
|
| 8 | 7 |
import java.util.List; |
| 9 |
import java.util.Set; |
|
| 10 | 8 |
import java.util.SortedSet; |
| 11 | 9 |
import java.util.TreeSet; |
| 12 | 10 |
|
| cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/SectionDefaultCacheStrategy.java | ||
|---|---|---|
| 16 | 16 |
import eu.etaxonomy.cdm.model.reference.INomenclaturalReference; |
| 17 | 17 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 18 | 18 |
import eu.etaxonomy.cdm.model.reference.ReferenceType; |
| 19 |
import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy; |
|
| 20 | 19 |
|
| 21 | 20 |
public class SectionDefaultCacheStrategy extends InRefDefaultCacheStrategyBase implements INomenclaturalReferenceCacheStrategy {
|
| 22 | 21 |
private static final long serialVersionUID = -4534389083526558368L; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializerTest.java | ||
|---|---|---|
| 12 | 12 |
import static org.junit.Assert.*; |
| 13 | 13 |
|
| 14 | 14 |
import org.apache.log4j.Logger; |
| 15 |
import org.junit.After; |
|
| 16 |
import org.junit.AfterClass; |
|
| 17 | 15 |
import org.junit.Before; |
| 18 |
import org.junit.BeforeClass; |
|
| 19 | 16 |
import org.junit.Ignore; |
| 20 | 17 |
import org.junit.Test; |
| 21 | 18 |
|
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/GrantedAuthorityImplTest.java | ||
|---|---|---|
| 14 | 14 |
|
| 15 | 15 |
import org.junit.Before; |
| 16 | 16 |
import org.junit.Test; |
| 17 |
import org.springframework.security.core.GrantedAuthority; |
|
| 18 | 17 |
|
| 19 | 18 |
/** |
| 20 | 19 |
* @author n.hoffmann |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/GroupTest.java | ||
|---|---|---|
| 12 | 12 |
|
| 13 | 13 |
import static org.junit.Assert.assertEquals; |
| 14 | 14 |
import static org.junit.Assert.assertNotNull; |
| 15 |
import static org.junit.Assert.fail; |
|
| 16 |
|
|
| 17 |
import java.util.Collection; |
|
| 18 |
|
|
| 19 | 15 |
import org.junit.Before; |
| 20 | 16 |
import org.junit.Test; |
| 21 | 17 |
import org.springframework.security.core.GrantedAuthority; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/IdentifiableEntityTest.java | ||
|---|---|---|
| 22 | 22 |
|
| 23 | 23 |
import eu.etaxonomy.cdm.model.agent.Person; |
| 24 | 24 |
import eu.etaxonomy.cdm.model.name.BotanicalName; |
| 25 |
import eu.etaxonomy.cdm.model.name.HybridRelationship; |
|
| 26 | 25 |
import eu.etaxonomy.cdm.model.name.HybridRelationshipType; |
| 27 | 26 |
import eu.etaxonomy.cdm.model.name.NonViralName; |
| 28 | 27 |
import eu.etaxonomy.cdm.model.name.Rank; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTest.java | ||
|---|---|---|
| 18 | 18 |
import java.util.SortedSet; |
| 19 | 19 |
|
| 20 | 20 |
import org.apache.log4j.Logger; |
| 21 |
import org.junit.After; |
|
| 22 | 21 |
import org.junit.Before; |
| 23 | 22 |
import org.junit.Ignore; |
| 24 | 23 |
import org.junit.Test; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java | ||
|---|---|---|
| 16 | 16 |
import org.junit.Assert; |
| 17 | 17 |
import org.junit.Before; |
| 18 | 18 |
import org.junit.BeforeClass; |
| 19 |
import org.junit.Ignore; |
|
| 20 | 19 |
import org.junit.Test; |
| 21 | 20 |
|
| 22 | 21 |
import eu.etaxonomy.cdm.model.common.DefaultTermInitializer; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaUtilsTest.java | ||
|---|---|---|
| 3 | 3 |
import java.net.URI; |
| 4 | 4 |
import java.util.ArrayList; |
| 5 | 5 |
import java.util.Collection; |
| 6 |
import java.util.List; |
|
| 7 | 6 |
import java.util.Map; |
| 8 | 7 |
import java.util.UUID; |
| 9 | 8 |
|
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NameTypeDesignationStatusTest.java | ||
|---|---|---|
| 11 | 11 |
package eu.etaxonomy.cdm.model.name; |
| 12 | 12 |
|
| 13 | 13 |
import static org.junit.Assert.assertEquals; |
| 14 |
import static org.junit.Assert.assertNotNull; |
|
| 15 |
|
|
| 16 | 14 |
import java.util.UUID; |
| 17 | 15 |
|
| 18 | 16 |
import org.apache.log4j.Logger; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusTypeTest.java | ||
|---|---|---|
| 11 | 11 |
package eu.etaxonomy.cdm.model.name; |
| 12 | 12 |
|
| 13 | 13 |
import static org.junit.Assert.assertEquals; |
| 14 |
import static org.junit.Assert.assertNotNull; |
|
| 15 |
|
|
| 16 | 14 |
import java.util.UUID; |
| 17 | 15 |
|
| 18 | 16 |
import org.apache.log4j.Logger; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java | ||
|---|---|---|
| 17 | 17 |
import static org.junit.Assert.assertSame; |
| 18 | 18 |
import static org.junit.Assert.assertTrue; |
| 19 | 19 |
|
| 20 |
import java.util.HashSet; |
|
| 21 | 20 |
import java.util.Map; |
| 22 |
import java.util.Set; |
|
| 23 |
|
|
| 24 | 21 |
import org.apache.log4j.Logger; |
| 25 | 22 |
import org.junit.Before; |
| 26 | 23 |
import org.junit.BeforeClass; |
| ... | ... | |
| 37 | 34 |
import eu.etaxonomy.cdm.model.reference.Reference; |
| 38 | 35 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
| 39 | 36 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 40 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
|
| 41 | 37 |
import eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy; |
| 42 | 38 |
|
| 43 | 39 |
/** |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/ViralNameTest.java | ||
|---|---|---|
| 9 | 9 |
*/ |
| 10 | 10 |
package eu.etaxonomy.cdm.model.name; |
| 11 | 11 |
|
| 12 |
import static org.junit.Assert.*; |
|
| 13 |
|
|
| 14 | 12 |
import org.apache.log4j.Logger; |
| 15 | 13 |
import org.junit.Assert; |
| 16 | 14 |
import org.junit.Before; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/ZoologicalNameTest.java | ||
|---|---|---|
| 9 | 9 |
*/ |
| 10 | 10 |
package eu.etaxonomy.cdm.model.name; |
| 11 | 11 |
|
| 12 |
import static org.junit.Assert.*; |
|
| 13 |
|
|
| 14 | 12 |
import org.apache.log4j.Logger; |
| 15 | 13 |
import org.junit.Assert; |
| 16 | 14 |
import org.junit.Before; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/media/MediaDefaultCacheStrategyTest.java | ||
|---|---|---|
| 20 | 20 |
|
| 21 | 21 |
import eu.etaxonomy.cdm.model.common.DefaultTermInitializer; |
| 22 | 22 |
import eu.etaxonomy.cdm.model.common.Language; |
| 23 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
|
| 24 | 23 |
import eu.etaxonomy.cdm.model.media.Media; |
| 25 | 24 |
import eu.etaxonomy.cdm.model.media.MediaRepresentation; |
| 26 |
import eu.etaxonomy.cdm.model.name.BotanicalName; |
|
| 27 |
import eu.etaxonomy.cdm.model.name.Rank; |
|
| 28 |
import eu.etaxonomy.cdm.model.reference.Reference; |
|
| 29 |
import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
|
| 30 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
|
| 31 | 25 |
|
| 32 | 26 |
/** |
| 33 | 27 |
* @author a.mueller |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/BotanicNameCacheStrategyTest.java | ||
|---|---|---|
| 21 | 21 |
import org.junit.BeforeClass; |
| 22 | 22 |
import org.junit.Test; |
| 23 | 23 |
|
| 24 |
import eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor; |
|
| 25 | 24 |
import eu.etaxonomy.cdm.model.agent.Person; |
| 26 | 25 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 27 | 26 |
import eu.etaxonomy.cdm.model.common.DefaultTermInitializer; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCacheStrategyTest.java | ||
|---|---|---|
| 20 | 20 |
import org.junit.BeforeClass; |
| 21 | 21 |
import org.junit.Test; |
| 22 | 22 |
|
| 23 |
import eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor; |
|
| 24 | 23 |
import eu.etaxonomy.cdm.model.agent.Person; |
| 25 | 24 |
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase; |
| 26 | 25 |
import eu.etaxonomy.cdm.model.common.DefaultTermInitializer; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/ParserProblemTest.java | ||
|---|---|---|
| 12 | 12 |
|
| 13 | 13 |
import static org.junit.Assert.*; |
| 14 | 14 |
|
| 15 |
import java.util.BitSet; |
|
| 16 | 15 |
import java.util.List; |
| 17 | 16 |
|
| 18 | 17 |
import org.apache.log4j.Logger; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParserTest.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.strategy.parser; |
| 11 | 11 |
|
| 12 |
import static org.junit.Assert.assertEquals; |
|
| 13 | 12 |
import static org.junit.Assert.assertFalse; |
| 14 | 13 |
import static org.junit.Assert.assertNotNull; |
| 15 | 14 |
import static org.junit.Assert.assertNull; |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestRegExs.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.test.function; |
| 11 | 11 |
|
| 12 |
import java.util.UUID; |
|
| 13 |
|
|
| 14 | 12 |
|
| 15 | 13 |
/** |
| 16 | 14 |
* @author a.babadshanjan |
| cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/EntityTestBase.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.test.unit; |
| 11 | 11 |
|
| 12 |
import static org.junit.Assert.fail; |
|
| 13 |
|
|
| 14 |
import java.lang.annotation.Annotation; |
|
| 15 |
import java.lang.reflect.Method; |
|
| 16 |
import java.lang.reflect.Modifier; |
|
| 17 |
import java.util.ArrayList; |
|
| 18 |
import java.util.List; |
|
| 19 |
|
|
| 20 |
import javax.persistence.Entity; |
|
| 21 |
import javax.persistence.Transient; |
|
| 22 |
|
|
| 23 | 12 |
import org.apache.log4j.Logger; |
| 24 |
import org.junit.Ignore; |
|
| 25 |
import org.junit.Test; |
|
| 26 |
|
|
| 27 | 13 |
import eu.etaxonomy.cdm.model.common.CdmBase; |
| 28 |
import eu.etaxonomy.cdm.model.name.NonViralName; |
|
| 29 | 14 |
|
| 30 | 15 |
/** |
| 31 | 16 |
* Superclass for all (hibernate)entities to test if certain (hibernate) needs are fulfilled. |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentSourceUtils.java | ||
|---|---|---|
| 16 | 16 |
import java.io.FileNotFoundException; |
| 17 | 17 |
import java.io.FileOutputStream; |
| 18 | 18 |
import java.io.IOException; |
| 19 |
import java.util.ArrayList; |
|
| 20 |
import java.util.List; |
|
| 21 |
|
|
| 22 | 19 |
import org.apache.log4j.Logger; |
| 23 | 20 |
import org.jdom.Document; |
| 24 | 21 |
import org.jdom.Element; |
| 25 |
import org.jdom.output.Format; |
|
| 26 |
|
|
| 27 | 22 |
import eu.etaxonomy.cdm.api.application.CdmApplicationUtils; |
| 28 | 23 |
import eu.etaxonomy.cdm.common.XmlHelp; |
| 29 |
import eu.etaxonomy.cdm.database.CdmPersistentDataSource; |
|
| 30 | 24 |
|
| 31 | 25 |
/** |
| 32 | 26 |
* Utility class which manages the persistent source settings |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmSource.java | ||
|---|---|---|
| 10 | 10 |
|
| 11 | 11 |
import java.util.Map; |
| 12 | 12 |
|
| 13 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 14 | 13 |
import eu.etaxonomy.cdm.model.metadata.CdmMetaData.MetaDataPropertyName; |
| 15 | 14 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
| 16 | 15 |
|
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java | ||
|---|---|---|
| 35 | 35 |
|
| 36 | 36 |
import com.mchange.v2.c3p0.ComboPooledDataSource; |
| 37 | 37 |
|
| 38 |
import eu.etaxonomy.cdm.common.CdmUtils; |
|
| 39 | 38 |
import eu.etaxonomy.cdm.common.XmlHelp; |
| 40 | 39 |
import eu.etaxonomy.cdm.config.CdmPersistentSourceUtils; |
| 41 | 40 |
import eu.etaxonomy.cdm.config.CdmPersistentXMLSource; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceBeanLoader.java | ||
|---|---|---|
| 1 | 1 |
package eu.etaxonomy.cdm.database; |
| 2 | 2 |
|
| 3 |
import java.io.File; |
|
| 4 | 3 |
import java.util.HashMap; |
| 5 | 4 |
import java.util.Map; |
| 6 | 5 |
|
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/MySQLDatabaseType.java | ||
|---|---|---|
| 10 | 10 |
package eu.etaxonomy.cdm.database.types; |
| 11 | 11 |
|
| 12 | 12 |
import org.hibernate.dialect.Dialect; |
| 13 |
import org.hibernate.dialect.MySQL5InnoDBUtf8Dialect; |
|
| 14 | 13 |
import org.hibernate.dialect.MySQL5MyISAMUtf8Dialect; |
| 15 | 14 |
|
| 16 | 15 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/test/ValidateForeignKeys.java | ||
|---|---|---|
| 11 | 11 |
|
| 12 | 12 |
import javax.sql.DataSource; |
| 13 | 13 |
|
| 14 |
import eu.etaxonomy.cdm.database.CdmDataSource; |
|
| 15 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 16 |
|
|
| 17 | 14 |
/** |
| 18 | 15 |
* |
| 19 | 16 |
* Class for testing foreign key constraints. Will move to another package in future. |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java | ||
|---|---|---|
| 21 | 21 |
import eu.etaxonomy.cdm.database.update.TermUpdaterBase; |
| 22 | 22 |
import eu.etaxonomy.cdm.database.update.v25_30.TermUpdater_25_30; |
| 23 | 23 |
import eu.etaxonomy.cdm.model.common.Language; |
| 24 |
import eu.etaxonomy.cdm.model.common.TermType; |
|
| 25 | 24 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 26 | 25 |
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType; |
| 27 | 26 |
|
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_313_314.java | ||
|---|---|---|
| 18 | 18 |
import eu.etaxonomy.cdm.database.update.ITermUpdater; |
| 19 | 19 |
import eu.etaxonomy.cdm.database.update.ITermUpdaterStep; |
| 20 | 20 |
import eu.etaxonomy.cdm.database.update.SimpleSchemaUpdaterStep; |
| 21 |
import eu.etaxonomy.cdm.database.update.SingleTermRemover; |
|
| 22 | 21 |
import eu.etaxonomy.cdm.database.update.SingleTermUpdater; |
| 23 | 22 |
import eu.etaxonomy.cdm.database.update.TermUpdaterBase; |
| 24 | 23 |
import eu.etaxonomy.cdm.model.common.Language; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/ClassificationRootNodeUpdater.java | ||
|---|---|---|
| 20 | 20 |
import eu.etaxonomy.cdm.database.update.CaseType; |
| 21 | 21 |
import eu.etaxonomy.cdm.database.update.ITermUpdaterStep; |
| 22 | 22 |
import eu.etaxonomy.cdm.database.update.SchemaUpdaterStepBase; |
| 23 |
import eu.etaxonomy.cdm.database.update.TableDroper; |
|
| 24 |
import eu.etaxonomy.cdm.model.name.Rank; |
|
| 25 |
import eu.etaxonomy.cdm.model.name.RankClass; |
|
| 26 | 23 |
|
| 27 | 24 |
/** |
| 28 | 25 |
* Creates empty root nodes for each classification. Replacing MN tables for classification root nodes. |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAnnotatableDao.java | ||
|---|---|---|
| 16 | 16 |
import eu.etaxonomy.cdm.model.common.MarkerType; |
| 17 | 17 |
import eu.etaxonomy.cdm.model.common.Marker; |
| 18 | 18 |
import eu.etaxonomy.cdm.persistence.dao.initializer.IBeanInitializer; |
| 19 |
import eu.etaxonomy.cdm.persistence.query.Grouping; |
|
| 20 | 19 |
import eu.etaxonomy.cdm.persistence.query.OrderHint; |
| 21 | 20 |
|
| 22 | 21 |
/** |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IOriginalSourceDao.java | ||
|---|---|---|
| 16 | 16 |
import java.util.Set; |
| 17 | 17 |
|
| 18 | 18 |
import eu.etaxonomy.cdm.model.common.ISourceable; |
| 19 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity; |
|
| 20 |
import eu.etaxonomy.cdm.model.common.OriginalSourceBase; |
|
| 21 | 19 |
|
| 22 | 20 |
|
| 23 | 21 |
public interface IOriginalSourceDao extends ICdmEntityDao<OriginalSourceBase>{
|
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/AnnotatableDaoImpl.java | ||
|---|---|---|
| 19 | 19 |
import eu.etaxonomy.cdm.model.common.Marker; |
| 20 | 20 |
import eu.etaxonomy.cdm.model.common.MarkerType; |
| 21 | 21 |
import eu.etaxonomy.cdm.persistence.dao.common.IAnnotatableDao; |
| 22 |
import eu.etaxonomy.cdm.persistence.query.Grouping; |
|
| 23 | 22 |
import eu.etaxonomy.cdm.persistence.query.OrderHint; |
| 24 | 23 |
import eu.etaxonomy.cdm.persistence.query.OrderHint.SortOrder; |
| 25 | 24 |
|
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/OrderedTermVocabularyDaoImpl.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.persistence.dao.hibernate.common; |
| 11 | 11 |
|
| 12 |
import java.util.List; |
|
| 13 |
|
|
| 14 | 12 |
import org.springframework.stereotype.Repository; |
| 15 | 13 |
|
| 16 | 14 |
import eu.etaxonomy.cdm.model.common.OrderedTermBase; |
| 17 | 15 |
import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary; |
| 18 |
import eu.etaxonomy.cdm.model.name.Rank; |
|
| 19 |
import eu.etaxonomy.cdm.model.occurrence.Collection; |
|
| 20 | 16 |
import eu.etaxonomy.cdm.persistence.dao.common.IOrderedTermVocabularyDao; |
| 21 | 17 |
|
| 22 | 18 |
/** |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureDaoImpl.java | ||
|---|---|---|
| 18 | 18 |
import eu.etaxonomy.cdm.model.description.Feature; |
| 19 | 19 |
import eu.etaxonomy.cdm.persistence.dao.description.IFeatureDao; |
| 20 | 20 |
import eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase; |
| 21 |
import eu.etaxonomy.cdm.persistence.query.OrderHint; |
|
| 22 | 21 |
|
| 23 | 22 |
|
| 24 | 23 |
@Repository |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyDaoImpl.java | ||
|---|---|---|
| 9 | 9 |
|
| 10 | 10 |
package eu.etaxonomy.cdm.persistence.dao.hibernate.description; |
| 11 | 11 |
|
| 12 |
import java.util.Collection; |
|
| 13 |
import java.util.HashMap; |
|
| 14 |
import java.util.Iterator; |
|
| 15 | 12 |
import java.util.List; |
| 16 |
import java.util.Map; |
|
| 17 |
import java.util.UUID; |
|
| 18 |
|
|
| 19 | 13 |
import org.apache.log4j.Logger; |
| 20 | 14 |
import org.hibernate.Criteria; |
| 21 | 15 |
import org.springframework.stereotype.Repository; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/statistics/StatisticsDaoHibernateImpl.java | ||
|---|---|---|
| 17 | 17 |
import org.springframework.stereotype.Repository; |
| 18 | 18 |
|
| 19 | 19 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity; |
| 20 |
import eu.etaxonomy.cdm.model.description.TaxonDescription; |
|
| 21 | 20 |
import eu.etaxonomy.cdm.model.taxon.Classification; |
| 22 | 21 |
import eu.etaxonomy.cdm.model.taxon.Synonym; |
| 23 | 22 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonAlternativeSpellingSuggestionParser.java | ||
|---|---|---|
| 13 | 13 |
import org.apache.lucene.store.Directory; |
| 14 | 14 |
import org.springframework.beans.factory.annotation.Autowired; |
| 15 | 15 |
import org.springframework.beans.factory.annotation.Qualifier; |
| 16 |
import org.springframework.stereotype.Component; |
|
| 17 |
|
|
| 18 | 16 |
import eu.etaxonomy.cdm.model.taxon.Synonym; |
| 19 | 17 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 20 | 18 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/IHomotypicalGroupDao.java | ||
|---|---|---|
| 9 | 9 |
import java.util.List; |
| 10 | 10 |
|
| 11 | 11 |
import eu.etaxonomy.cdm.model.name.HomotypicalGroup; |
| 12 |
import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
|
| 13 | 12 |
import eu.etaxonomy.cdm.model.name.TypeDesignationBase; |
| 14 | 13 |
import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase; |
| 15 | 14 |
import eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/statistics/IStatisticsDao.java | ||
|---|---|---|
| 1 | 1 |
package eu.etaxonomy.cdm.persistence.dao.statistics; |
| 2 | 2 |
|
| 3 | 3 |
import java.util.List; |
| 4 |
import java.util.Set; |
|
| 5 | 4 |
import java.util.UUID; |
| 6 | 5 |
|
| 7 |
import javax.swing.text.StyledEditorKit.BoldAction; |
|
| 8 |
|
|
| 9 | 6 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity; |
| 10 | 7 |
import eu.etaxonomy.cdm.model.taxon.Classification; |
| 11 | 8 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
| cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilterDaoHibernateImpl.java | ||
|---|---|---|
| 10 | 10 |
import org.springframework.stereotype.Repository; |
| 11 | 11 |
|
| 12 | 12 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 13 |
import eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl; |
|
| 14 | 13 |
import eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase; |
| 15 |
import eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonNodeDaoHibernateImpl; |
|
| 16 | 14 |
import eu.etaxonomy.cdm.persistence.dao.taxon.tmp.LogicFilter.Op; |
| 17 | 15 |
|
| 18 | 16 |
/** |
| cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java | ||
|---|---|---|
| 17 | 17 |
|
| 18 | 18 |
import org.junit.Before; |
| 19 | 19 |
import org.junit.BeforeClass; |
| 20 |
import org.junit.Ignore; |
|
| 21 | 20 |
import org.junit.Test; |
| 22 | 21 |
|
| 23 | 22 |
|
| cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java | ||
|---|---|---|
| 13 | 13 |
|
| 14 | 14 |
import eu.etaxonomy.cdm.database.CdmDataSource; |
| 15 | 15 |
import eu.etaxonomy.cdm.database.CdmPersistentDataSource; |
| 16 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 17 | 16 |
|
| 18 | 17 |
public class Datasource {
|
| 19 | 18 |
private static final Logger logger = Logger.getLogger(Datasource.class); |
| cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/RemoteXMLEntityFactory.java | ||
|---|---|---|
| 24 | 24 |
import java.util.Map; |
| 25 | 25 |
import java.util.UUID; |
| 26 | 26 |
|
| 27 |
import org.apache.http.HttpEntity; |
|
| 28 | 27 |
import org.apache.http.HttpResponse; |
| 29 | 28 |
import org.apache.http.NameValuePair; |
| 30 | 29 |
import org.apache.http.message.BasicNameValuePair; |
| 31 |
import org.apache.http.util.EntityUtils; |
|
| 32 | 30 |
import org.apache.log4j.Logger; |
| 33 | 31 |
import org.jdom.Document; |
| 34 | 32 |
import org.jdom.Element; |
| 35 | 33 |
import org.jdom.JDOMException; |
| 36 | 34 |
import org.jdom.xpath.XPath; |
| 37 |
import org.springframework.web.servlet.ModelAndView; |
|
| 38 |
|
|
| 39 | 35 |
import eu.etaxonomy.cdm.common.UriUtils; |
| 40 | 36 |
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor; |
| 41 | 37 |
import eu.etaxonomy.cdm.print.XMLHelper.EntityType; |
| cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/XMLHarvester.java | ||
|---|---|---|
| 10 | 10 |
|
| 11 | 11 |
package eu.etaxonomy.cdm.print; |
| 12 | 12 |
|
| 13 |
import java.io.IOException; |
|
| 14 | 13 |
import java.util.ArrayList; |
| 15 | 14 |
import java.util.List; |
| 16 | 15 |
import java.util.Locale; |
| ... | ... | |
| 21 | 20 |
import org.jdom.Document; |
| 22 | 21 |
import org.jdom.Element; |
| 23 | 22 |
import org.jdom.JDOMException; |
| 24 |
import org.jdom.Parent; |
|
| 25 |
import org.jdom.output.XMLOutputter; |
|
| 26 | 23 |
import org.jdom.xpath.XPath; |
| 27 | 24 |
|
| 28 | 25 |
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor; |
| cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/StylesFactory.java | ||
|---|---|---|
| 18 | 18 |
import org.odftoolkit.odfdom.dom.element.style.StyleTabStopsElement; |
| 19 | 19 |
import org.odftoolkit.odfdom.dom.element.style.StyleTextPropertiesElement; |
| 20 | 20 |
import org.odftoolkit.odfdom.dom.style.OdfStyleFamily; |
| 21 |
import org.odftoolkit.odfdom.dom.style.props.OdfStyleProperty; |
|
| 22 | 21 |
import org.odftoolkit.odfdom.incubator.doc.office.OdfOfficeStyles; |
| 23 | 22 |
import org.odftoolkit.odfdom.incubator.doc.style.OdfDefaultStyle; |
| 24 | 23 |
import org.odftoolkit.odfdom.incubator.doc.style.OdfStyle; |
| cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/pdf/PdfOutputModule.java | ||
|---|---|---|
| 25 | 25 |
import org.apache.fop.apps.Fop; |
| 26 | 26 |
import org.apache.fop.apps.FopFactory; |
| 27 | 27 |
import org.apache.fop.apps.MimeConstants; |
| 28 |
import org.apache.fop.render.Renderer; |
|
| 29 | 28 |
import org.apache.log4j.Logger; |
| 30 | 29 |
import org.jdom.Document; |
| 31 | 30 |
import org.jdom.transform.JDOMSource; |
| cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/PubTest.java | ||
|---|---|---|
| 20 | 20 |
import org.springframework.core.io.ClassPathResource; |
| 21 | 21 |
import org.springframework.core.io.Resource; |
| 22 | 22 |
|
| 23 |
import eu.etaxonomy.cdm.api.application.CdmApplicationController; |
|
| 24 | 23 |
import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
| 25 |
import eu.etaxonomy.cdm.common.AccountStore; |
|
| 26 | 24 |
import eu.etaxonomy.cdm.common.CdmUtils; |
| 27 | 25 |
import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor; |
| 28 | 26 |
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor; |
| ... | ... | |
| 30 | 28 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
Also available in: Unified diff
organizing imports