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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.taxon;
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import static org.junit.Assert.assertEquals;
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import org.apache.log4j.Logger;
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import org.junit.After;
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import org.junit.AfterClass;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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//import eu.etaxonomy.cdm.model.reference.Book;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
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/**
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* @author a.mueller
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* @created 21.09.2009
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*/
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public class TaxonBaseDefaultCacheStrategyTest {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(TaxonBaseDefaultCacheStrategyTest.class);
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private final String expectedNameTitleCache = "Abies alba (L.) Mill.";
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private final String expectedNameCache = "Abies alba";
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private IBotanicalName name;
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private Reference sec;
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/**
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* @throws java.lang.Exception
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*/
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@BeforeClass
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public static void setUpBeforeClass() throws Exception {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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}
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/**
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* @throws java.lang.Exception
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*/
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@AfterClass
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public static void tearDownAfterClass() throws Exception {
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}
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/**
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* @throws java.lang.Exception
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*/
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@Before
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public void setUp() throws Exception {
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name = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name.setGenusOrUninomial("Abies");
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name.setSpecificEpithet("alba");
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Person combinationAuthor = Person.NewInstance();
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combinationAuthor.setNomenclaturalTitle("Mill.");
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Person basionymAuthor = Person.NewInstance();
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basionymAuthor.setNomenclaturalTitle("L.");
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name.setCombinationAuthorship(combinationAuthor);
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name.setBasionymAuthorship(basionymAuthor);
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assertEquals("Namecache should be Abies alba", expectedNameCache, name.getNameCache());
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assertEquals("Titlecache should be Abies alba (Mill.) L.", expectedNameTitleCache, name.getTitleCache());
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sec = ReferenceFactory.newBook();
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sec.setTitle("Sp.Pl.");
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}
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/**
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* @throws java.lang.Exception
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*/
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@After
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public void tearDown() throws Exception {
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}
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//******************************* TESTS ********************************************************
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy#getTitleCache(eu.etaxonomy.cdm.model.taxon.TaxonBase)}.
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*/
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@Test
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public void testGetTitleCache() {
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TaxonBase<?> taxonBase = Taxon.NewInstance(name, sec);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " sec. Sp.Pl.", taxonBase.getTitleCache());
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//without sec.
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taxonBase.setSec(null);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " sec. ???", taxonBase.getTitleCache());
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//appended phrase without sec.
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String appendedPhrase = "aff. 'schippii'";
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taxonBase.setAppendedPhrase(appendedPhrase);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " aff. 'schippii'", taxonBase.getTitleCache());
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//appended phrase with sec.
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taxonBase.setSec(sec);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " aff. 'schippii' sec. Sp.Pl.", taxonBase.getTitleCache());
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//use name cache
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taxonBase.setUseNameCache(true);
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assertEquals("Taxon titlecache is wrong", expectedNameCache + " aff. 'schippii' sec. Sp.Pl.", taxonBase.getTitleCache());
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taxonBase.setDoubtful(true);
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assertEquals("Taxon titlecache is wrong", "?" + expectedNameCache + " aff. 'schippii' sec. Sp.Pl.", taxonBase.getTitleCache());
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//with nom status
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taxonBase.setAppendedPhrase(null);
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taxonBase.setUseNameCache(false);
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taxonBase.setDoubtful(false);
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name.addStatus(NomenclaturalStatusType.ILLEGITIMATE(), null, null);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + ", nom. illeg., sec. Sp.Pl.", taxonBase.getTitleCache());
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}
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//same as for accepted taxa but with syn. sec. instead of sec.
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@Test
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public void testSynSec() {
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Synonym taxonBase = Synonym.NewInstance(name, sec);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " syn. sec. Sp.Pl.", taxonBase.getTitleCache());
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//without sec.
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taxonBase.setSec(null);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " syn. sec. ???", taxonBase.getTitleCache());
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//appended phrase without sec.
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String appendedPhrase = "aff. 'schippii'";
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taxonBase.setAppendedPhrase(appendedPhrase);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " aff. 'schippii'", taxonBase.getTitleCache());
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//appended phrase with sec.
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taxonBase.setSec(sec);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " aff. 'schippii' syn. sec. Sp.Pl.", taxonBase.getTitleCache());
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//use name cache
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taxonBase.setUseNameCache(true);
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assertEquals("Taxon titlecache is wrong", expectedNameCache + " aff. 'schippii' syn. sec. Sp.Pl.", taxonBase.getTitleCache());
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taxonBase.setDoubtful(true);
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assertEquals("Taxon titlecache is wrong", "?" + expectedNameCache + " aff. 'schippii' syn. sec. Sp.Pl.", taxonBase.getTitleCache());
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//with nom status
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taxonBase.setAppendedPhrase(null);
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taxonBase.setUseNameCache(false);
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taxonBase.setDoubtful(false);
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name.addStatus(NomenclaturalStatusType.ILLEGITIMATE(), null, null);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + ", nom. illeg., syn. sec. Sp.Pl.", taxonBase.getTitleCache());
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}
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@Test
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public void testGetTitleCacheWithoutName() {
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TaxonBase<?> taxonBase = Taxon.NewInstance(null, sec);
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assertEquals("Taxon titlecache is wrong", "??? sec. Sp.Pl.", taxonBase.getTitleCache());
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}
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//test missing "&" in title cache #3822
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@Test
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public void testAndInTitleCache() {
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TaxonBase<?> taxonBase = Taxon.NewInstance(name, sec);
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Team team = Team.NewInstance();
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team.addTeamMember((Person)name.getCombinationAuthorship());
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team.addTeamMember((Person)name.getBasionymAuthorship());
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name.setCombinationAuthorship(team);
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// System.out.println(taxonBase.generateTitle());
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assertEquals("Abies alba (L.) Mill. \u0026 L. sec. Sp.Pl.", taxonBase.generateTitle());
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name = TaxonNameFactory.NewBotanicalInstance(null);
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NonViralNameParserImpl.NewInstance().parseFullName(name, "Cichorium glandulosum Boiss. \u0026 A. Huet", null, true);
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Taxon taxon = Taxon.NewInstance(name, sec);
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assertEquals("Cichorium glandulosum Boiss. \u0026 A. Huet sec. Sp.Pl.", taxon.getTitleCache());
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}
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@Test
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public void testProtectedTitleCache(){
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TaxonBase<?> taxonBase = Taxon.NewInstance(name, sec);
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taxonBase.setTitleCache("abc", true);
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taxonBase.setDoubtful(true);
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Assert.assertEquals("abc", taxonBase.getTitleCache());
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}
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@Test
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public void testProtectedSecTitleCache(){
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TaxonBase<?> taxonBase = Taxon.NewInstance(name, sec);
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sec.setTitleCache("My protected sec ref", true);
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taxonBase.setDoubtful(true);
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taxonBase.setSecMicroReference("123");
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Assert.assertEquals("?Abies alba (L.) Mill. sec. My protected sec ref: 123", taxonBase.getTitleCache());
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}
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@Test
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public void testMicroReference(){
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TaxonBase<?> taxonBase = Taxon.NewInstance(name, sec);
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String secMicroRef = "p. 553";
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taxonBase.setSecMicroReference(secMicroRef);
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assertEquals("Taxon titlecache is wrong", expectedNameTitleCache + " sec. Sp.Pl.: " + secMicroRef,
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taxonBase.getTitleCache());
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}
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}
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