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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.UUID;
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import javax.persistence.Entity;
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import javax.persistence.Transient;
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlType;
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import org.apache.log4j.Logger;
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import org.hibernate.envers.Audited;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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/**
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* The terms in this class define the status of a {@link NameTypeDesignation name type designation}.
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*
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* @author a.babadshanjan
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* @since 20.03.2009
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*/
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@XmlAccessorType(XmlAccessType.FIELD)
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@XmlType(name = "NameTypeDesignationStatus")
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@Entity
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//@Indexed disabled to reduce clutter in indexes, since this type is not used by any search
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//@Indexed(index = "eu.etaxonomy.cdm.model.common.DefinedTermBase")
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@Audited
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public class NameTypeDesignationStatus extends TypeDesignationStatusBase<NameTypeDesignationStatus> {
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private static final long serialVersionUID = -8801837496688711907L;
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(NameTypeDesignationStatus.class);
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private static final UUID uuidAutomatic = UUID.fromString("e89d8b21-615a-4602-913f-1625bf39a69f");
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private static final UUID uuidMonotypy = UUID.fromString("3fc639b2-9a64-45f8-9a81-657a4043ad74");
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private static final UUID uuidNotApplicable = UUID.fromString("91a9d6a9-7754-41cd-9f7e-be136f599f7e");
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private static final UUID uuidOriginalDesignation = UUID.fromString("40032a44-973b-4a64-b25e-76f86c3a753c");
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private static final UUID uuidPresentDesignation = UUID.fromString("e5f38f5d-995d-4470-a036-1a9792a543fc");
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private static final UUID uuidSubsequentMonotypy = UUID.fromString("2b5806d8-31b0-406e-a32a-4adac0c89ae4");
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private static final UUID uuidSubsequentDesignation = UUID.fromString("3e449e7d-a03c-4431-a7d3-aa258406f6b2");
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private static final UUID uuidTautonymy = UUID.fromString("84521f09-3e10-43f5-aa6f-2173a55a6790");
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private static final UUID uuidLectotype = UUID.fromString("4177c938-b741-40e1-95e5-4c53bd1ed87d");
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/**
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* Factory method: creates an additional type designation status instance
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* with a description (in the {@link eu.etaxonomy.cdm.model.common.Language#DEFAULT() default language}), a label
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* and a label abbreviation.
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*
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* @param term the string (in the default language) describing the
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* new name type designation status to be created
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* @param label the string identifying the new name type designation
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* status to be created
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* @param labelAbbrev the string identifying (in abbreviated form) the
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* new name type designation status to be created
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*/
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public static NameTypeDesignationStatus NewInstance(String term, String label, String labelAbbrev){
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return new NameTypeDesignationStatus(term, label, labelAbbrev);
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}
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protected static Map<UUID, NameTypeDesignationStatus> termMap = null;
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protected static NameTypeDesignationStatus findTermByUuid(UUID uuid){
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if (termMap == null || termMap.isEmpty()){
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return getTermByClassAndUUID(NameTypeDesignationStatus.class, uuid);
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} else {
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return termMap.get(uuid);
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}
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}
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//********************************** Constructor *********************************/
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//for hibernate use only
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@Deprecated
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protected NameTypeDesignationStatus() {
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super (TermType.NameTypeDesignationStatus);
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}
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protected NameTypeDesignationStatus(String term, String label, String labelAbbrev) {
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super(TermType.NameTypeDesignationStatus, term, label, labelAbbrev);
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}
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//************************** METHODS ********************************
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.DefinedTermBase#resetTerms()
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*/
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@Override
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public void resetTerms(){
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termMap = null;
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}
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/**
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* Returns the "automatic" name type designation status.</BR>
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* If a new name has to be established for a genus name this new name automatically gets
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* the same type species as the old name.
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* ICZN 67.8
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*/
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public static final NameTypeDesignationStatus AUTOMATIC(){
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return findTermByUuid(uuidAutomatic);
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}
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/**
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* Returns the "monotypy" name type designation status.</BR>
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* Only one species was included in original genus description.
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* ICZN 68.3.
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* No {@linkplain TypeDesignationBase#getCitation() citation} is needed
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* for a monotypy as the type species is decided within the original paper.
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*/
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public static final NameTypeDesignationStatus MONOTYPY(){
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return findTermByUuid(uuidMonotypy);
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}
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/**
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* Returns the "not applicable" name type designation status.</BR>
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* Used in the BDWD (BioSystematic Database of World Diptera) for
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* nomina nuda, emendations and misspellings.
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*/
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public static final NameTypeDesignationStatus NOT_APPLICABLE(){
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return findTermByUuid(uuidNotApplicable);
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}
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/**
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* Returns the "original designation" name type designation status.</BR>
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* The type species is designated in the original genus description
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* (this includes indication in the species name typicus).
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* ICZN 68.2<Br>
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* No {@linkplain TypeDesignationBase#getCitation() citation} is needed
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* for an original designation as the type species is decided within the original paper.
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*/
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public static final NameTypeDesignationStatus ORIGINAL_DESIGNATION(){
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return findTermByUuid(uuidOriginalDesignation);
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}
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/**
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* Returns the "present designation" name type designation status.</BR>
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* The type species is designated now (maybe possible in future,
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* after ICZN has changed and online publications are available).
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*/
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public static final NameTypeDesignationStatus PRESENT_DESIGNATION(){
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return findTermByUuid(uuidPresentDesignation);
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}
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/**
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* Returns the "subsequent monotypy" name type designation status.</BR>
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* If only one nominal species was first subsequently included
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* in a nominal genus or subgenus established without included species,
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* that nominal species is automatically fixed as the type species,
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* by subsequent monotypy.
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* ICZN 69.3
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*/
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public static final NameTypeDesignationStatus SUBSEQUENT_MONOTYPY(){
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return findTermByUuid(uuidSubsequentMonotypy);
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}
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/**
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* Returns the "subsequent designation" name type designation status.</BR>
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* Several species were included in the original genus description.
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* One of these has been designated as type species in a later publication.
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*
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* ICZN 69.1
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*/
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public static final NameTypeDesignationStatus SUBSEQUENT_DESIGNATION(){
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return findTermByUuid(uuidSubsequentDesignation);
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}
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/**
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* Returns the lectotype name type designation status.</BR>
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* This may be the same as a {@link SUBSEQUENT_DESIGNATION()} but used in botany.
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* Maybe these 2 status will be merged in future.
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*/
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public static final NameTypeDesignationStatus LECTOTYPE(){
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return findTermByUuid(uuidLectotype);
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}
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/**
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* Returns the "tautonomy" name type designation status.</BR>
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* The genus name is the same as the species name of one of the included species.
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* ICZN 68.4, 68.5
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*/
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public static final NameTypeDesignationStatus TAUTONYMY(){
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return findTermByUuid(uuidTautonymy);
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}
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@Override
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protected void setDefaultTerms(TermVocabulary<NameTypeDesignationStatus> termVocabulary) {
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termMap = new HashMap<UUID, NameTypeDesignationStatus>();
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for (NameTypeDesignationStatus term : termVocabulary.getTerms()){
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termMap.put(term.getUuid(), term);
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}
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}
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/**
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* Returns the boolean value indicating whether <i>this</i> type designation
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* status is itself "lectotype" or a kind of "lectotype" (true) or not
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* (false). Returns false if <i>this</i> type designation status is null.<BR>
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* A lectotype is a {@link eu.etaxonomy.cdm.model.occurrence.DerivedUnit specimen or illustration} designated as the
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* nomenclatural type, when no holotype was indicated at the time of
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* publication of the "type-bringing" {@link TaxonName taxon name}, when the
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* holotype is found to be assigned to taxon names belonging to more than
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* one {@link HomotypicalGroup homotypical group}, or as long as it is missing.
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*
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* @see #LECTOTYPE()
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* @see #HOLOTYPE()
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* @see eu.etaxonomy.cdm.model.common.DefinedTermBase#getKindOf()
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*/
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@Transient
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public boolean isLectotype(){
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if (
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this.equals(LECTOTYPE()) ||
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this.equals(SUBSEQUENT_DESIGNATION()) ||
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this.equals(PRESENT_DESIGNATION() )
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){
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return true;
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}else{
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return false;
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}
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}
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}
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