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/* Package Annotations*/
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@javax.xml.bind.annotation.XmlSchema(namespace = "http://etaxonomy.eu/cdm/model/common/1.0", elementFormDefault = javax.xml.bind.annotation.XmlNsForm.QUALIFIED)
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@com.sun.xml.bind.XmlAccessorFactory(eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl.class)
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@org.hibernate.annotations.GenericGenerators(
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{
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/* @see {@link eu.etaxonomy.cdm.persistence.hibernate.TableGenerator} */
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@GenericGenerator(
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name="custom-enhanced-table",
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strategy = "eu.etaxonomy.cdm.persistence.hibernate.TableGenerator",
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parameters = {
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@Parameter(name="optimizer", value = "pooled"),
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/* initial_value = increment_size as proposed to fix an issue with pooled optimizer
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* http://opensource.atlassian.com/projects/hibernate/browse/HHH-3608?focusedCommentId=37112&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#action_37112
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*/
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@Parameter(name="initial_value", value= "10"),
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@Parameter(name="increment_size", value = "10"),
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/* we want to have a sequence per table */
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@Parameter(name="prefer_entity_table_as_segment_value", value="true")
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}
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),
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/* Steve Ebersole of Hibernate highly recommends the use of the two new generators
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* http://relation.to/2082.lace
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* Also see: http://docs.jboss.org/hibernate/core/3.3/reference/en/html/mapping.html#mapping-declaration-id-enhanced
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*/
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/* new table generator
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* always stores sequences in a table. May be configured to return a sequence on a per table basis
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* RECOMMENDED WHEN RUNNING A CDM DATASOURCE IN A MULTI CLIENT ENVIRONMENT
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*/
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@GenericGenerator(
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name="enhanced-table",
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strategy = "org.hibernate.id.enhanced.TableGenerator",
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parameters = {
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@Parameter(name="optimizer", value = "pooled"),
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/* initial_value = increment_size as proposed to fix an issue with pooled optimizer
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* http://opensource.atlassian.com/projects/hibernate/browse/HHH-3608?focusedCommentId=37112&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#action_37112
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*/
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@Parameter(name="initial_value", value= "10"),
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@Parameter(name="increment_size", value = "10"),
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/* we want to have a sequence per table */
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@Parameter(name="prefer_entity_table_as_segment_value", value="true")
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}
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),
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/* new sequence generator
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* Using sequence when the dialect supports it, otherwise it will emulate a sequence using a table in the db
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* This method will result in database wide unique id's */
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@GenericGenerator(
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name="enhanced-sequence",
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strategy = "org.hibernate.id.enhanced.SequenceStyleGenerator",
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parameters = {
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@Parameter(name="optimizer", value = "pooled"),
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/* initial_value = increment_size as proposed to fix an issue with pooled optimizer
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* http://opensource.atlassian.com/projects/hibernate/browse/HHH-3608?focusedCommentId=37112&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#action_37112
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*/
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@Parameter(name="initial_value", value= "10"),
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@Parameter(name="increment_size", value = "10")
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}
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),
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/* A couple of old style generators */
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/* generates identifiers of type long, short or int that are unique only when no other process
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* is inserting data into the same table.
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* DO NOT USE IN A CLUSTER OR MULTIPLE CLIENT ENVIRONMENT */
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@GenericGenerator(
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name="system-increment",
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strategy = "increment"
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),
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/* supports identity columns in DB2, MySQL, MS SQL Server, Sybase and HypersonicSQL.
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* The returned identifier is of type long, short or int. */
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@GenericGenerator(
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name="system-identity",
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strategy = "identity"
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),
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/* uses a hi/lo algorithm to efficiently generate identifiers of type long, short or int,
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* given a table and column (by default hibernate_unique_key and next_hi respectively) as
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* a source of hi values. The hi/lo algorithm generates identifiers that are unique only
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* for a particular database. */
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@GenericGenerator(
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name="system-hilo",
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strategy = "hilo"
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),
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/* uses a sequence in DB2, PostgreSQL, Oracle, SAP DB, McKoi or a generator in Interbase.
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* The returned identifier is of type long, short or int */
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@GenericGenerator(
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name="system-sequence",
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strategy = "sequence"
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),
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/* selects identity, sequence or hilo depending upon the capabilities of the underlying database. */
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@GenericGenerator(
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name="system-native",
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strategy = "native"
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)
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}
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)
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@org.hibernate.annotations.TypeDefs( {
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//TODO needed ??
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@org.hibernate.annotations.TypeDef(name="persistentDuration", typeClass=org.jadira.usertype.dateandtime.joda.PersistentDurationAsString.class),
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@org.hibernate.annotations.TypeDef(name="dateTimeUserType", typeClass=org.jadira.usertype.dateandtime.joda.PersistentDateTime.class),
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@org.hibernate.annotations.TypeDef(name="partialUserType", typeClass=eu.etaxonomy.cdm.hibernate.PartialUserType.class),
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@org.hibernate.annotations.TypeDef(name="uuidUserType", typeClass=eu.etaxonomy.cdm.hibernate.UUIDUserType.class),
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@org.hibernate.annotations.TypeDef(name="uriUserType", typeClass=eu.etaxonomy.cdm.hibernate.URIUserType.class),
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@org.hibernate.annotations.TypeDef(name="enumUserType", typeClass=eu.etaxonomy.cdm.hibernate.EnumUserType.class),
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@org.hibernate.annotations.TypeDef(name="doiUserType", typeClass=eu.etaxonomy.cdm.hibernate.DOIUserType.class),
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@org.hibernate.annotations.TypeDef(name="shiftUserType", typeClass=eu.etaxonomy.cdm.hibernate.ShiftUserType.class),
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})
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@org.hibernate.annotations.AnyMetaDef(name = "CdmBase" ,
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metaType="string",
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idType="integer",
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metaValues={
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//Identifiable Entities
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@MetaValue(value = "Institution", targetEntity = Institution.class),
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@MetaValue(value = "Person", targetEntity = Person.class),
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@MetaValue(value = "Team", targetEntity = Team.class),
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@MetaValue(value = "MediaKey", targetEntity = MediaKey.class),
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@MetaValue(value = "SpecimenDescription", targetEntity = SpecimenDescription.class),
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@MetaValue(value = "TaxonDescription", targetEntity = TaxonDescription.class),
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@MetaValue(value = "TaxonNameDescription", targetEntity = TaxonNameDescription.class),
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@MetaValue(value = "PolytomousKey", targetEntity = PolytomousKey.class),
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@MetaValue(value = "Media", targetEntity = Media.class),
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@MetaValue(value = "DnaSample", targetEntity = DnaSample.class),
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@MetaValue(value = "BacterialName", targetEntity = BacterialName.class),
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@MetaValue(value = "BotanicalName", targetEntity = BotanicalName.class),
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@MetaValue(value = "CultivarPlantName", targetEntity = CultivarPlantName.class),
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@MetaValue(value = "ViralName", targetEntity = ViralName.class),
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@MetaValue(value = "ZoologicalName", targetEntity = ZoologicalName.class),
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@MetaValue(value = "Collection", targetEntity = Collection.class),
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@MetaValue(value = "FieldUnit", targetEntity = FieldUnit.class),
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@MetaValue(value = "DerivedUnit", targetEntity = DerivedUnit.class),
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@MetaValue(value = "Reference", targetEntity = Reference.class),
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@MetaValue(value = "Classification", targetEntity = Classification.class),
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@MetaValue(value = "Synonym", targetEntity = Synonym.class),
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@MetaValue(value = "Taxon", targetEntity = Taxon.class),
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@MetaValue(value = "FeatureTree", targetEntity = FeatureTree.class),
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@MetaValue(value = "PhylogeneticTree", targetEntity = PhylogeneticTree.class),
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@MetaValue(value = "MediaSpecimen", targetEntity = MediaSpecimen.class),
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@MetaValue(value = "NonViralName", targetEntity = NonViralName.class),
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@MetaValue(value = "TermVocabulary", targetEntity = TermVocabulary.class),
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@MetaValue(value = "OrderedTermVocabulary", targetEntity = OrderedTermVocabulary.class),
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@MetaValue(value = "AnnotationType", targetEntity = AnnotationType.class),
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@MetaValue(value = "DefinedTerm", targetEntity = DefinedTerm.class),
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@MetaValue(value = "DerivationEventType", targetEntity = DerivationEventType.class),
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@MetaValue(value = "ExtensionType", targetEntity = ExtensionType.class),
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@MetaValue(value = "Feature", targetEntity = Feature.class),
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@MetaValue(value = "Language", targetEntity = Language.class),
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@MetaValue(value = "MarkerType", targetEntity = MarkerType.class),
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@MetaValue(value = "MeasurementUnit", targetEntity = MeasurementUnit.class),
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@MetaValue(value = "NamedAreaType", targetEntity = NamedAreaType.class),
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@MetaValue(value = "NaturalLanguageTerm", targetEntity = NaturalLanguageTerm.class),
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@MetaValue(value = "ReferenceSystem", targetEntity = ReferenceSystem.class),
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@MetaValue(value = "RightsType", targetEntity = RightsType.class),
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@MetaValue(value = "StatisticalMeasure", targetEntity = StatisticalMeasure.class),
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@MetaValue(value = "TextFormat", targetEntity = TextFormat.class),
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@MetaValue(value = "NamedArea", targetEntity = NamedArea.class),
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@MetaValue(value = "Country", targetEntity = Country.class),
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@MetaValue(value = "NamedAreaLevel", targetEntity = NamedAreaLevel.class),
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@MetaValue(value = "NomenclaturalStatusType", targetEntity = NomenclaturalStatusType.class),
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@MetaValue(value = "OrderedTerm", targetEntity = OrderedTerm.class),
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@MetaValue(value = "PresenceAbsenceTerm", targetEntity = PresenceAbsenceTerm.class),
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@MetaValue(value = "Rank", targetEntity = Rank.class),
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@MetaValue(value = "HybridRelationshipType", targetEntity = HybridRelationshipType.class),
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@MetaValue(value = "NameRelationshipType", targetEntity = NameRelationshipType.class),
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@MetaValue(value = "SynonymRelationshipType", targetEntity = SynonymRelationshipType.class),
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@MetaValue(value = "TaxonRelationshipType", targetEntity = TaxonRelationshipType.class),
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@MetaValue(value = "State", targetEntity = State.class),
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@MetaValue(value = "NameTypeDesignationStatus", targetEntity = NameTypeDesignationStatus.class),
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@MetaValue(value = "SpecimenTypeDesignationStatus", targetEntity = SpecimenTypeDesignationStatus.class),
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//Annotatable Entities
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@MetaValue(value = "TextData", targetEntity = TextData.class),
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@MetaValue(value = "CategoricalData", targetEntity = CategoricalData.class),
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@MetaValue(value = "CommonTaxonName", targetEntity = CommonTaxonName.class),
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@MetaValue(value = "Distribution", targetEntity = Distribution.class),
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@MetaValue(value = "IndividualsAssociation", targetEntity = IndividualsAssociation.class),
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@MetaValue(value = "QuantitativeData", targetEntity = QuantitativeData.class),
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@MetaValue(value = "TaxonInteraction", targetEntity = TaxonInteraction.class),
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@MetaValue(value = "Sequence", targetEntity = Sequence.class),
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@MetaValue(value = "NomenclaturalStatus", targetEntity = NomenclaturalStatus.class),
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@MetaValue(value = "Annotation", targetEntity = Annotation.class),
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@MetaValue(value = "User", targetEntity = User.class), //required?
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@MetaValue(value = "AmplificationResult", targetEntity = AmplificationResult.class),
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@MetaValue(value = "Amplification", targetEntity = Amplification.class),
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@MetaValue(value = "DerivationEvent", targetEntity = DerivationEvent.class),
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@MetaValue(value = "DeterminationEvent", targetEntity = DeterminationEvent.class),
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@MetaValue(value = "GatheringEvent", targetEntity = GatheringEvent.class),
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@MetaValue(value = "MaterialOrMethodEvent", targetEntity = MaterialOrMethodEvent.class),
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@MetaValue(value = "Cloning", targetEntity = Cloning.class),
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@MetaValue(value = "PreservationMethod", targetEntity = PreservationMethod.class),
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@MetaValue(value = "SingleRead", targetEntity = SingleRead.class),
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@MetaValue(value = "HomotypicalGroup", targetEntity = HomotypicalGroup.class),
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@MetaValue(value = "Identifier", targetEntity = Identifier.class),
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@MetaValue(value = "Credit", targetEntity = Credit.class),
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@MetaValue(value = "LanguageString", targetEntity = LanguageString.class),
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@MetaValue(value = "Representation", targetEntity = Representation.class),
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@MetaValue(value = "Rights", targetEntity = Rights.class),
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@MetaValue(value = "Primer", targetEntity = Primer.class),
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@MetaValue(value = "TaxonNode", targetEntity = TaxonNode.class),
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@MetaValue(value = "TaxonNodeAgentRelation", targetEntity = TaxonNodeAgentRelation.class),
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@MetaValue(value = "WorkingSet", targetEntity = WorkingSet.class),
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@MetaValue(value = "MultiAccessKey", targetEntity = MultiAccessKey.class),
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@MetaValue(value = "DescriptionElementSource", targetEntity = DescriptionElementSource.class),
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@MetaValue(value = "IdentifiableSource", targetEntity = IdentifiableSource.class),
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@MetaValue(value = "HybridRelationship", targetEntity = HybridRelationship.class),
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@MetaValue(value = "NameRelationship", targetEntity = NameRelationship.class),
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@MetaValue(value = "SynonymRelationship", targetEntity = SynonymRelationship.class),
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@MetaValue(value = "TaxonRelationship", targetEntity = TaxonRelationship.class),
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@MetaValue(value = "NameTypeDesignation", targetEntity = NameTypeDesignation.class),
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@MetaValue(value = "SpecimenTypeDesignation", targetEntity = SpecimenTypeDesignation.class),
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})
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package eu.etaxonomy.cdm.model.common;
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227
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228
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import org.hibernate.annotations.GenericGenerator;
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229
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import org.hibernate.annotations.MetaValue;
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import org.hibernate.annotations.Parameter;
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231
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232
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.description.CategoricalData;
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import eu.etaxonomy.cdm.model.description.CommonTaxonName;
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import eu.etaxonomy.cdm.model.description.DescriptionElementSource;
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import eu.etaxonomy.cdm.model.description.Distribution;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.FeatureTree;
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import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
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242
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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243
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import eu.etaxonomy.cdm.model.description.MediaKey;
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244
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import eu.etaxonomy.cdm.model.description.MultiAccessKey;
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245
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import eu.etaxonomy.cdm.model.description.NaturalLanguageTerm;
|
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246
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import eu.etaxonomy.cdm.model.description.PolytomousKey;
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247
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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248
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import eu.etaxonomy.cdm.model.description.QuantitativeData;
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249
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import eu.etaxonomy.cdm.model.description.SpecimenDescription;
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import eu.etaxonomy.cdm.model.description.State;
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251
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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253
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import eu.etaxonomy.cdm.model.description.TaxonInteraction;
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254
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import eu.etaxonomy.cdm.model.description.TaxonNameDescription;
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255
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import eu.etaxonomy.cdm.model.description.TextData;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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257
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import eu.etaxonomy.cdm.model.description.WorkingSet;
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258
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import eu.etaxonomy.cdm.model.location.Country;
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259
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import eu.etaxonomy.cdm.model.location.NamedArea;
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260
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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261
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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262
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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263
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.media.RightsType;
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266
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import eu.etaxonomy.cdm.model.molecular.Amplification;
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267
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import eu.etaxonomy.cdm.model.molecular.AmplificationResult;
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268
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import eu.etaxonomy.cdm.model.molecular.Cloning;
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269
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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270
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import eu.etaxonomy.cdm.model.molecular.PhylogeneticTree;
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271
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import eu.etaxonomy.cdm.model.molecular.Primer;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.molecular.SingleRead;
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274
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import eu.etaxonomy.cdm.model.name.BacterialName;
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275
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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276
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import eu.etaxonomy.cdm.model.name.CultivarPlantName;
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277
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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278
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import eu.etaxonomy.cdm.model.name.HybridRelationship;
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279
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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280
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import eu.etaxonomy.cdm.model.name.NameRelationship;
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281
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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282
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import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
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283
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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284
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
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285
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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286
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import eu.etaxonomy.cdm.model.name.NonViralName;
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287
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import eu.etaxonomy.cdm.model.name.Rank;
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288
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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289
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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290
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import eu.etaxonomy.cdm.model.name.ViralName;
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291
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import eu.etaxonomy.cdm.model.name.ZoologicalName;
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292
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import eu.etaxonomy.cdm.model.occurrence.Collection;
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293
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import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
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294
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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295
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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296
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import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
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297
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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298
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import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
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299
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import eu.etaxonomy.cdm.model.occurrence.MaterialOrMethodEvent;
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300
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import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
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301
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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302
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import eu.etaxonomy.cdm.model.reference.Reference;
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303
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import eu.etaxonomy.cdm.model.taxon.Classification;
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304
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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305
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
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306
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
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307
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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308
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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309
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import eu.etaxonomy.cdm.model.taxon.TaxonNodeAgentRelation;
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310
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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311
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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312
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