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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.dwca.out;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.PrintWriter;
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import java.io.UnsupportedEncodingException;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.description.Distribution;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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/**
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* @author a.mueller
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* @since 20.04.2011
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*/
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public class DwcaDistributionExport extends DwcaDataExportBase {
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private static final long serialVersionUID = -3274468345456407430L;
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private static final Logger logger = Logger.getLogger(DwcaDistributionExport.class);
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private static final String ROW_TYPE = "http://rs.gbif.org/terms/1.0/Distribution";
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protected static final String fileName = "distribution.txt";
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private DwcaMetaDataRecord metaRecord;
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/**
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* Constructor
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*/
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public DwcaDistributionExport(DwcaTaxExportState state) {
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super();
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this.ioName = this.getClass().getSimpleName();
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metaRecord = new DwcaMetaDataRecord(! IS_CORE, fileName, ROW_TYPE);
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state.addMetaRecord(metaRecord);
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file = DwcaTaxExportFile.DISTRIBUTION;
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}
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@Override
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protected void doInvoke(DwcaTaxExportState state){}
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/**
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* @param state
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* @param node
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* @throws IOException
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* @throws FileNotFoundException
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* @throws UnsupportedEncodingException
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*/
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@Override
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protected void handleTaxonNode(DwcaTaxExportState state, TaxonNode node)
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throws IOException, FileNotFoundException, UnsupportedEncodingException {
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try {
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DwcaTaxExportConfigurator config = state.getConfig();
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Taxon taxon = CdmBase.deproxy(node.getTaxon());
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Set<TaxonDescription> descriptions = taxon.getDescriptions();
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for (TaxonDescription description : descriptions){
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for (DescriptionElementBase el : description.getElements()){
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if (el.isInstanceOf(Distribution.class) ){
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if (! state.recordExists(file, el)){
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DwcaDistributionRecord record = new DwcaDistributionRecord(metaRecord, config);
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Distribution distribution = CdmBase.deproxy(el, Distribution.class);
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handleDistribution(state, record, distribution, taxon, config);
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PrintWriter writer = createPrintWriter(state, file);
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record.write(state, writer);
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state.addExistingRecord(file, distribution);
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}
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}else if (el.getFeature().equals(Feature.DISTRIBUTION())){
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String message = "Distribution export for TextData not yet implemented";
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state.getResult().addWarning(message);
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}
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}
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}
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} catch (Exception e) {
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String message = "Unexpected exception: " + e.getMessage();
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state.getResult().addException(e, message);
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}finally{
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flushWriter(state, file);
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}
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}
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private void handleDistribution(DwcaTaxExportState state, DwcaDistributionRecord record, Distribution distribution, Taxon taxon, DwcaTaxExportConfigurator config) {
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record.setId(taxon.getId());
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record.setUuid(taxon.getUuid());
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handleArea(state, record, distribution.getArea(), taxon, true);
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//TODO missing
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record.setLifeStage(null);
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record.setOccurrenceStatus(distribution.getStatus());
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//TODO missing
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record.setThreadStatus(null);
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record.setEstablishmentMeans(distribution.getStatus());
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//TODO missing
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record.setAppendixCITES(null);
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//TODO missing
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record.setEventDate(null);
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//TODO missing
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record.setSeasonalDate(null);
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//FIXME
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record.setSource(getSources(distribution, config));
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//FIXME
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record.setOccurrenceRemarks(null);
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}
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@Override
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protected boolean doCheck(DwcaTaxExportState state) {
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boolean result = true;
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logger.warn("No check implemented for " + this.ioName);
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return result;
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}
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@Override
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public boolean isIgnore(DwcaTaxExportState state) {
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return ! state.getConfig().isDoDistributions();
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}
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}
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