1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.io.common.mapping;
|
11
|
|
12
|
import java.sql.ResultSet;
|
13
|
import java.sql.SQLException;
|
14
|
import java.util.UUID;
|
15
|
|
16
|
import org.apache.log4j.Logger;
|
17
|
|
18
|
import eu.etaxonomy.cdm.io.common.DbImportStateBase;
|
19
|
import eu.etaxonomy.cdm.model.common.DefinedTermBase;
|
20
|
import eu.etaxonomy.cdm.model.common.VersionableEntity;
|
21
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
22
|
|
23
|
/**
|
24
|
* This class either retrieves a defined Term from the database or creates and saves it in the database.
|
25
|
* This is done by first checking the according transformer for term attributes map to an existing
|
26
|
* CDM term (term that is available by static methods in the term classes), if not it tries to retrieve
|
27
|
* it via its uuid available through the transformer, if not retrievable it tries to retrieve from the
|
28
|
* database via the original source, if not retrievable it creates the new and stores it in the database.
|
29
|
* @author a.mueller
|
30
|
* @since 12.05.2009
|
31
|
* @version 1.0
|
32
|
* @param <TERM>The class of the term to be created or retrieved.
|
33
|
* @param <TERMED>The class of the object the term is added to.
|
34
|
* @param <STATE>The class of the import state thate is available during import.
|
35
|
*/
|
36
|
public abstract class DbImportDefinedTermCreationMapperBase<TERM extends DefinedTermBase, TERMED extends VersionableEntity, STATE extends DbImportStateBase<?,?>> extends DbImportObjectCreationMapperBase<TERMED, STATE> {
|
37
|
private static final Logger logger = Logger.getLogger(DbImportDefinedTermCreationMapperBase.class);
|
38
|
|
39
|
|
40
|
//******************************* ATTRIBUTES ***************************************/
|
41
|
protected String dbTermAttribute;
|
42
|
protected String dbLabelAttribute;
|
43
|
protected String dbLabelAbbrevAttribute;
|
44
|
|
45
|
//********************************* CONSTRUCTOR ****************************************/
|
46
|
/**
|
47
|
* @param mappingImport
|
48
|
*/
|
49
|
protected DbImportDefinedTermCreationMapperBase(String dbIdAttribute, String termNamespace, String dbTermAttribute, String dbLabelAttribute, String dbLabelAbbrevAttribute) {
|
50
|
super(dbIdAttribute, termNamespace);
|
51
|
this.dbTermAttribute = dbTermAttribute;
|
52
|
this.dbLabelAttribute = dbLabelAttribute;
|
53
|
this.dbLabelAbbrevAttribute = dbLabelAbbrevAttribute;
|
54
|
}
|
55
|
|
56
|
//************************************ METHODS *******************************************/
|
57
|
|
58
|
/* (non-Javadoc)
|
59
|
* @see eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase#invoke(java.sql.ResultSet, eu.etaxonomy.cdm.model.common.VersionableEntity)
|
60
|
*/
|
61
|
@Override
|
62
|
public TERMED invoke(ResultSet rs, TERMED noObject) throws SQLException {
|
63
|
String key = getKeyString(rs);
|
64
|
if (key != null){
|
65
|
TERM definedTerm = getDefinedTermIfExist(rs);
|
66
|
if (definedTerm == null){
|
67
|
definedTerm = createDefinedTerm(rs);
|
68
|
Reference citation = null;
|
69
|
getState().getCurrentIO().addOriginalSource(rs, definedTerm, dbIdAttribute, objectToCreateNamespace, citation);
|
70
|
|
71
|
UUID transformerUuid = getUuidFromTransformer(rs);
|
72
|
if (transformerUuid != null){
|
73
|
definedTerm.setUuid(transformerUuid);
|
74
|
}
|
75
|
getState().getCurrentIO().getTermService().save(definedTerm);
|
76
|
saveTermToState(definedTerm);
|
77
|
if (transformerUuid == null){
|
78
|
getState().addRelatedObject(objectToCreateNamespace, getKeyString(rs), definedTerm);
|
79
|
}
|
80
|
}
|
81
|
}
|
82
|
return noObject;
|
83
|
}
|
84
|
|
85
|
/**
|
86
|
* @param rs
|
87
|
* @param definedTerm
|
88
|
* @throws SQLException
|
89
|
*/
|
90
|
private void makeUuid(ResultSet rs, TERM definedTerm) throws SQLException {
|
91
|
UUID uuid = getUuidFromTransformer(rs);
|
92
|
if (uuid != null){
|
93
|
definedTerm.setUuid(uuid);
|
94
|
}
|
95
|
}
|
96
|
|
97
|
/**
|
98
|
* @param rs
|
99
|
* @return
|
100
|
* @throws SQLException
|
101
|
*/
|
102
|
protected abstract TERM createDefinedTerm(ResultSet rs) throws SQLException;
|
103
|
|
104
|
/**
|
105
|
* Returns the term if it is available via the transformer, or via the state (uuidMap or relatedObject)
|
106
|
* @return
|
107
|
* @throws SQLException
|
108
|
*/
|
109
|
private TERM getDefinedTermIfExist(ResultSet rs) throws SQLException {
|
110
|
//get object from transformer, return if not null
|
111
|
TERM definedTerm = getTermFromTransformer(rs);
|
112
|
if (definedTerm == null){
|
113
|
//if null get uuid from transformer
|
114
|
UUID uuidTerm = getUuidFromTransformer(rs);
|
115
|
if (uuidTerm != null){
|
116
|
definedTerm = getTermByUuid(uuidTerm, rs);
|
117
|
}else{
|
118
|
definedTerm = getTermByIdentifier(rs);
|
119
|
}
|
120
|
}
|
121
|
return definedTerm;
|
122
|
}
|
123
|
|
124
|
/**
|
125
|
* @return
|
126
|
* @throws SQLException
|
127
|
*/
|
128
|
protected TERM getTermByIdentifier(ResultSet rs) throws SQLException {
|
129
|
//get object from stat.featur map
|
130
|
String key = getKeyString(rs);
|
131
|
if (key == null){
|
132
|
return null;
|
133
|
}
|
134
|
TERM term = (TERM)getState().getRelatedObject(objectToCreateNamespace, key);
|
135
|
return term;
|
136
|
}
|
137
|
|
138
|
|
139
|
/**
|
140
|
* @param uuidTerm
|
141
|
* @return
|
142
|
* @throws SQLException
|
143
|
*/
|
144
|
protected TERM getTermByUuid(UUID uuidTerm, ResultSet rs) throws SQLException{
|
145
|
TERM term = getTermFromState(uuidTerm);
|
146
|
if (term == null){
|
147
|
term = (TERM)getState().getCurrentIO().getTermService().find(uuidTerm);
|
148
|
if (term != null){
|
149
|
saveTermToState(term);
|
150
|
}
|
151
|
}
|
152
|
return term;
|
153
|
}
|
154
|
|
155
|
|
156
|
|
157
|
/**
|
158
|
* Saves the defined term to the state
|
159
|
* @param rs
|
160
|
*/
|
161
|
protected abstract void saveTermToState(TERM term);
|
162
|
|
163
|
/**
|
164
|
* @param rs
|
165
|
* @return
|
166
|
*/
|
167
|
protected abstract TERM getTermFromState(UUID uuid);
|
168
|
|
169
|
|
170
|
/**
|
171
|
* @return
|
172
|
* @throws SQLException
|
173
|
*/
|
174
|
protected UUID getUuidFromTransformer(ResultSet rs) throws SQLException{
|
175
|
IInputTransformer transformer = getTransformer();
|
176
|
String key = getKeyString(rs);
|
177
|
UUID uuid;
|
178
|
try {
|
179
|
uuid = getUuidFromTransformer(key, transformer);
|
180
|
} catch (UndefinedTransformerMethodException e) {
|
181
|
logger.warn(e.getMessage());
|
182
|
return null;
|
183
|
}
|
184
|
return uuid;
|
185
|
}
|
186
|
|
187
|
/**
|
188
|
* @return
|
189
|
* @throws UndefinedTransformerMethodException
|
190
|
*/
|
191
|
protected abstract UUID getUuidFromTransformer(String key, IInputTransformer transformer) throws UndefinedTransformerMethodException;
|
192
|
|
193
|
|
194
|
/**
|
195
|
* @param rs
|
196
|
* @return
|
197
|
* @throws SQLException
|
198
|
*/
|
199
|
protected TERM getTermFromTransformer(ResultSet rs) throws SQLException{
|
200
|
IInputTransformer transformer = getTransformer();
|
201
|
String key = getKeyString(rs);
|
202
|
TERM term;
|
203
|
try {
|
204
|
term = getTermFromTransformer(key, transformer);
|
205
|
} catch (UndefinedTransformerMethodException e) {
|
206
|
logger.warn(e.getMessage());
|
207
|
return null;
|
208
|
}
|
209
|
return term;
|
210
|
}
|
211
|
|
212
|
|
213
|
/**
|
214
|
* @param key
|
215
|
* @param transformer
|
216
|
* @return
|
217
|
* @throws UndefinedTransformerMethodException
|
218
|
*/
|
219
|
protected abstract TERM getTermFromTransformer(String key, IInputTransformer transformer) throws UndefinedTransformerMethodException;
|
220
|
|
221
|
/**
|
222
|
* @param rs
|
223
|
* @return
|
224
|
* @throws SQLException
|
225
|
*/
|
226
|
protected String getKeyString(ResultSet rs) throws SQLException {
|
227
|
Object oKey = rs.getString(dbIdAttribute);
|
228
|
if (oKey == null){
|
229
|
return null;
|
230
|
}
|
231
|
String key = String.valueOf(oKey);
|
232
|
key = key.trim();
|
233
|
return key;
|
234
|
}
|
235
|
|
236
|
/* (non-Javadoc)
|
237
|
* @see eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase#doInvoke(java.sql.ResultSet, eu.etaxonomy.cdm.model.common.VersionableEntity)
|
238
|
*/
|
239
|
@Override
|
240
|
protected TERMED doInvoke(ResultSet rs, TERMED createdObject)
|
241
|
throws SQLException {
|
242
|
return createdObject; //not needed because invoke is implemented separately
|
243
|
}
|
244
|
|
245
|
/* (non-Javadoc)
|
246
|
* @see eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase#createObject(java.sql.ResultSet)
|
247
|
*/
|
248
|
@Override
|
249
|
protected TERMED createObject(ResultSet rs) throws SQLException {
|
250
|
logger.warn("Never should read this");
|
251
|
return null; //not needed, object is created in createDefineTerm(rs)
|
252
|
}
|
253
|
|
254
|
|
255
|
|
256
|
}
|