|
1
|
/**
|
|
2
|
* Copyright (C) 2007 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
|
|
10
|
package eu.etaxonomy.cdm.io.berlinModel;
|
|
11
|
|
|
12
|
import java.sql.ResultSet;
|
|
13
|
import java.sql.SQLException;
|
|
14
|
import java.util.UUID;
|
|
15
|
|
|
16
|
import org.apache.log4j.Logger;
|
|
17
|
|
|
18
|
import eu.etaxonomy.cdm.common.ResultWrapper;
|
|
19
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
20
|
import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
|
|
21
|
import eu.etaxonomy.cdm.model.common.RelationshipBase;
|
|
22
|
import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
|
|
23
|
import eu.etaxonomy.cdm.model.description.Feature;
|
|
24
|
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
|
|
25
|
import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
|
|
26
|
import eu.etaxonomy.cdm.model.name.NameRelationshipType;
|
|
27
|
import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
|
|
28
|
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
|
|
29
|
import eu.etaxonomy.cdm.model.name.Rank;
|
|
30
|
import eu.etaxonomy.cdm.model.name.RankClass;
|
|
31
|
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
|
|
32
|
import eu.etaxonomy.cdm.model.reference.ISection;
|
|
33
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
|
34
|
import eu.etaxonomy.cdm.model.reference.ReferenceType;
|
|
35
|
import eu.etaxonomy.cdm.model.taxon.Synonym;
|
|
36
|
import eu.etaxonomy.cdm.model.taxon.SynonymType;
|
|
37
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
38
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
|
39
|
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
|
|
40
|
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
|
|
41
|
|
|
42
|
/**
|
|
43
|
* @author a.mueller
|
|
44
|
* @since 20.03.2008
|
|
45
|
*/
|
|
46
|
public class BerlinModelTransformer {
|
|
47
|
private static final Logger logger = Logger.getLogger(BerlinModelTransformer.class);
|
|
48
|
|
|
49
|
//source Refs
|
|
50
|
public static final UUID uuidSourceRefEuroMed = UUID.fromString("0603a84a-f024-4454-ab92-9e2ac0139126");
|
|
51
|
|
|
52
|
//ranks
|
|
53
|
public static UUID uuidRankCollSpecies = UUID.fromString("e14630ee-9446-4bb4-a7b7-4c3881bc5d94");
|
|
54
|
public static UUID uuidRankProles = UUID.fromString("8810d1ba-6a34-4ae3-a355-919ccd1cd1a5");
|
|
55
|
public static UUID uuidRankRace = UUID.fromString("196dee39-cfd8-4460-8bf0-88b83da27f62");
|
|
56
|
public static UUID uuidRankSublusus = UUID.fromString("1fafa596-a8e7-4e62-a378-3cc8cb3627ca");
|
|
57
|
|
|
58
|
//named areas
|
|
59
|
public static UUID euroMedUuid = UUID.fromString("9fe09988-58c0-4c06-8474-f660a0c50014");
|
|
60
|
|
|
61
|
public static UUID uuidEasternEuropeanRussia = UUID.fromString("3f013375-0e0a-40c3-8a14-84c0535fab40");
|
|
62
|
public static UUID uuidSerbiaMontenegro = UUID.fromString("8926dbe6-863e-47a9-98a0-7dc9ed2c57f7");
|
|
63
|
public static UUID uuidSerbia = UUID.fromString("4ffed197-3d7e-4cd9-8984-e64b8dee9512");
|
|
64
|
public static UUID uuidLebanonSyria = UUID.fromString("0c45f250-99da-4b19-aa89-c3e56cfdf103");
|
|
65
|
public static UUID uuidUssr = UUID.fromString("a512e00a-45f3-4be5-82fa-bba8d675696f");
|
|
66
|
public static UUID uuidSicilyMalta = UUID.fromString("424d81ee-d272-4ae8-9600-0a334049cd72");
|
|
67
|
|
|
68
|
public static UUID uuidDesertas = UUID.fromString("36f5e93e-34e8-45b5-a401-f0e0faad21cf");
|
|
69
|
public static UUID uuidMadeira = UUID.fromString("086e27ee-78ff-4236-aca9-9850850cd355");
|
|
70
|
public static UUID uuidPortoSanto = UUID.fromString("1f9ab6a0-a402-4dfe-8c5b-b1844eb4d8e5");
|
|
71
|
//azores
|
|
72
|
public static UUID uuidFlores = UUID.fromString("ef0067c2-8bbb-4e37-8462-97b03f51ba43");
|
|
73
|
public static UUID uuidCorvo = UUID.fromString("b1e6117c-2be1-43a3-9233-227dd90bdee9");
|
|
74
|
public static UUID uuidFaial = UUID.fromString("14f6dcdb-6524-4700-b80c-66424952ef2b");
|
|
75
|
public static UUID uuidGraciosa = UUID.fromString("05f93a7b-d813-4833-864f-eedbba747133");
|
|
76
|
public static UUID uuidSaoJorge = UUID.fromString("578e0ecd-b5e3-4c87-8ecc-0fc4c7e217d9");
|
|
77
|
public static UUID uuidSaoMiguel = UUID.fromString("0e2f6ad8-7afb-4f01-b134-4f71991e877a");
|
|
78
|
public static UUID uuidPico = UUID.fromString("98cc566f-4110-43d5-830f-68436a009f49");
|
|
79
|
public static UUID uuidSantaMaria = UUID.fromString("bd5e5d4a-22b7-41aa-8e58-1d1d73a9954d");
|
|
80
|
public static UUID uuidTerceira = UUID.fromString("6fc257c0-a131-41f0-b6c3-51ef9c4fa962");
|
|
81
|
//Canyry islands
|
|
82
|
public static UUID uuidGranCanaria = UUID.fromString("a0240c35-0e05-4157-8321-67ba8e31fdb9");
|
|
83
|
public static UUID uuidFuerteventura = UUID.fromString("549ce2c1-6d49-4bf3-b75d-cf3f4b5a1398");
|
|
84
|
public static UUID uuidGomera = UUID.fromString("895fab09-7478-4210-b42a-423d23c6f85e");
|
|
85
|
public static UUID uuidHierro = UUID.fromString("d137b6a5-31bc-418c-9403-f042017dc04b");
|
|
86
|
public static UUID uuidLanzaroteWithGraciosa = UUID.fromString("c9b08dc1-f301-4d9d-b447-b8744602c776");
|
|
87
|
public static UUID uuidLaPalma = UUID.fromString("fdb3f2b2-f154-4f04-9f31-240a47a0e780");
|
|
88
|
public static UUID uuidTenerife = UUID.fromString("73658c7e-a568-465e-bd84-4554fc93ca56");
|
|
89
|
//Baleares
|
|
90
|
public static UUID uuidIbizaWithFormentera = UUID.fromString("1cda2a33-3469-49d5-8e77-cb5451110519");
|
|
91
|
public static UUID uuidMallorca = UUID.fromString("a10cba04-b4b5-4a4b-b69a-fcd4b3916fec");
|
|
92
|
public static UUID uuidMenorca = UUID.fromString("9f6ede48-27f8-4270-bf4e-c97eaa86aab7");
|
|
93
|
|
|
94
|
//russia
|
|
95
|
public static UUID uuidRussiaNorthern = UUID.fromString("c23bc1c9-a775-4426-b883-07d4d7d47eed");
|
|
96
|
public static UUID uuidRussiaBaltic = UUID.fromString("579dad44-9439-4b19-8716-ab90d8f27944");
|
|
97
|
public static UUID uuidRussiaCentral = UUID.fromString("8bbc8c6a-2ef2-4024-ad51-66fe34c70092");
|
|
98
|
public static UUID uuidRussiaSouthWest = UUID.fromString("daa5c207-5567-4690-8742-5e4d153b6a64");
|
|
99
|
public static UUID uuidRussiaSouthEast = UUID.fromString("e8516598-b529-489e-9ee8-63bbbd295c1b");
|
|
100
|
public static UUID uuidEastAegeanIslands = UUID.fromString("1c429593-c493-46e6-971a-0d70be690da8");
|
|
101
|
public static UUID uuidTurkishEastAegeanIslands = UUID.fromString("ba35dba3-ac70-41ae-81c2-2070943f44f2");
|
|
102
|
public static UUID uuidBalticStates = UUID.fromString("bf9d64f6-3183-4fa5-8e90-73090e7a2282");
|
|
103
|
public static final UUID uuidTurkey = UUID.fromString("d344ee2c-14c8-438d-b03d-11538edb1268");
|
|
104
|
public static final UUID uuidCaucasia = UUID.fromString("ebfd3fd1-3859-4e5e-95c7-f66010599d7e");
|
|
105
|
|
|
106
|
|
|
107
|
|
|
108
|
//E+M areas
|
|
109
|
public static UUID uuidVocEuroMedAreas = UUID.fromString("625a4962-c211-4597-816e-5804083efe26");
|
|
110
|
public static UUID uuidEM = UUID.fromString("111BDF38-7A32-440A-9808-8AF1C9E54B51");
|
|
111
|
public static UUID uuidEUR = UUID.fromString("80B3CEEE-2F78-45CE-B4F4-E473F5ED8343");
|
|
112
|
public static UUID uuid14 = UUID.fromString("4FF83A35-97DE-4C39-BEDE-27EE9ECEFB45");
|
|
113
|
public static UUID uuid20 = UUID.fromString("19D93AD1-59E7-49ED-B513-D7D493EDC4DE");
|
|
114
|
public static UUID uuid21 = UUID.fromString("1B98DAF0-A709-4871-9A8B-CFDD09F41763");
|
|
115
|
public static UUID uuid33 = UUID.fromString("6B719260-1E48-4D85-8BC3-320852E1B331");
|
|
116
|
public static UUID uuidDa = UUID.fromString("867871C9-9931-47D0-AEF7-468B9519EBB2");
|
|
117
|
public static UUID uuidFe = UUID.fromString("C4EF26AF-11E0-4888-9FC3-5E56F4422BB4");
|
|
118
|
public static UUID uuidFa = UUID.fromString("70426E7E-2EAA-4987-95FB-5CB6E56980F3");
|
|
119
|
public static UUID uuidBr = UUID.fromString("A22329C4-0B81-4E00-BCC3-2F44A6CA56D0");
|
|
120
|
public static UUID uuidIs = UUID.fromString("3D2950E9-C2FD-462E-9697-DCB7241D514E");
|
|
121
|
public static UUID uuidHb = UUID.fromString("65E405E7-B3D4-44B6-BE67-4881582EA274");
|
|
122
|
public static UUID uuidNo = UUID.fromString("2D3F1181-6838-4034-96CB-F254A558572A");
|
|
123
|
public static UUID uuidSb = UUID.fromString("BC847AF8-30C3-48B2-A881-2B2DEAC0A137");
|
|
124
|
public static UUID uuidSu = UUID.fromString("F064AB9F-EDDB-47D8-8E54-B9E8AD19111D");
|
|
125
|
public static UUID uuidAu = UUID.fromString("37C77C23-9673-4ABC-87C2-B29E9FA87FA8");
|
|
126
|
public static UUID uuidBe = UUID.fromString("4840373B-F949-4630-B655-9B37F845CFDA");
|
|
127
|
public static UUID uuidCz = UUID.fromString("02E67A70-C192-4A01-A311-99F8C42F9D51");
|
|
128
|
public static UUID uuidGe = UUID.fromString("F617DDEA-51C9-4EF1-B7F4-ED22F871631D");
|
|
129
|
public static UUID uuidHu = UUID.fromString("AD7EDDB1-C089-436F-88BA-BC9115BBD6E0");
|
|
130
|
public static UUID uuidHo = UUID.fromString("00B8FE6D-D04B-4CAC-ADCE-32B44ABB385A");
|
|
131
|
public static UUID uuidPo = UUID.fromString("F23864DF-DFD6-4ABC-B7D0-FD97408AE0A9");
|
|
132
|
public static UUID uuidHe = UUID.fromString("7C28D878-F16D-4043-A94E-750BEF910064");
|
|
133
|
public static UUID uuidBl = UUID.fromString("A4326211-3219-4655-83AD-599D635DB638");
|
|
134
|
public static UUID uuidCo = UUID.fromString("3EE3CB3E-23DE-491F-94DF-35DB7A1D3AC0");
|
|
135
|
public static UUID uuidGa = UUID.fromString("28591C04-60E3-432A-9D05-CBC945462D2E");
|
|
136
|
public static UUID uuidLu = UUID.fromString("205512B0-AA22-4041-B92B-336FEB79FA4F");
|
|
137
|
public static UUID uuidSa = UUID.fromString("11368A92-2362-4029-A26A-E35CEC0798C1");
|
|
138
|
public static UUID uuidHs = UUID.fromString("6AD92C01-1442-4F2F-BD58-F73075B26C27");
|
|
139
|
public static UUID uuidAl = UUID.fromString("635B63DA-0AAF-446C-843E-BEB52E2A1B90");
|
|
140
|
public static UUID uuidBu = UUID.fromString("75F3CF66-B272-464E-9B1E-35B8E511936D");
|
|
141
|
public static UUID uuidGr = UUID.fromString("34DF8B89-7DFA-4265-9A3E-D540DB72AA77");
|
|
142
|
public static UUID uuidIt = UUID.fromString("06B8F41D-B9A8-4B55-8AAB-DE90EB3D0A9C");
|
|
143
|
public static UUID uuidCr = UUID.fromString("20A8A822-1C87-43F0-A5EF-2AF1CC5DC0FC");
|
|
144
|
public static UUID uuidRm = UUID.fromString("EAB29D40-E3B2-4920-BB1F-8757DFBC9E86");
|
|
145
|
public static UUID uuidSi_S = UUID.fromString("DD861671-930F-4C9E-92D8-EADDC28EB6B7");
|
|
146
|
public static UUID uuidTu_E = UUID.fromString("2B732609-55DB-4F25-BC73-618FFF515ADC");
|
|
147
|
public static UUID uuidJu = UUID.fromString("BD5E6833-7E0E-41A8-83D6-149A31F2CE05");
|
|
148
|
public static UUID uuidUk_K = UUID.fromString("40B7219D-E38C-44EB-9877-E311A2734022");
|
|
149
|
public static UUID uuidUk = UUID.fromString("7A8DF5D0-3D18-4386-891E-96E11BDB6FEB");
|
|
150
|
public static UUID uuidAg = UUID.fromString("548E583C-DBE7-463F-A01B-2A966F2B32D2");
|
|
151
|
public static UUID uuidEg = UUID.fromString("9EDDDE2E-95B7-4443-89A8-C30D031E16A5");
|
|
152
|
public static UUID uuidLi = UUID.fromString("2F506902-2A56-40C8-84CB-B436C84ED258");
|
|
153
|
public static UUID uuidMa = UUID.fromString("D639A7AC-F873-414E-8869-73D10B9CF842");
|
|
154
|
public static UUID uuidTn = UUID.fromString("AF4D86D4-2CA0-48A2-BA15-0D74454D1EAD");
|
|
155
|
public static UUID uuidAz = UUID.fromString("CEC2EBD3-DFD0-4CE6-827F-BFF8FBAF5283");
|
|
156
|
public static UUID uuidSg = UUID.fromString("BC4A0307-B81A-4233-B8BD-EFB9CEDFD530");
|
|
157
|
public static UUID uuidAb = UUID.fromString("D3744C2D-2777-4E85-98BF-04D2FD589EBF");
|
|
158
|
public static UUID uuidAr = UUID.fromString("535FED1E-3EC9-4563-AF55-E753AEFCFBFE");
|
|
159
|
public static UUID uuidAb_A = UUID.fromString("0F4C98BF-AF7B-4CDA-B62C-AD6A1909BFA0");
|
|
160
|
public static UUID uuidGg = UUID.fromString("DA1CCDA8-5867-4098-A709-100A66E2150A");
|
|
161
|
public static UUID uuidAb_N = UUID.fromString("AA75B0CA-49C9-4F8E-8CC2-2A343EB2FFF4");
|
|
162
|
public static UUID uuidCy = UUID.fromString("36EFDF69-09C0-4160-A502-9EEFBC22A984");
|
|
163
|
public static UUID uuidAE_G = UUID.fromString("76F5F3F6-9C3E-47F5-8E85-55360C50273C");
|
|
164
|
public static UUID uuidLe = UUID.fromString("639F5D97-EC9E-4EE2-ADFC-DFF73F7CC970");
|
|
165
|
public static UUID uuidSn = UUID.fromString("5D8E0B00-96CE-4ACC-AF02-62A1B9866144");
|
|
166
|
public static UUID uuidTu_A = UUID.fromString("F7B59D79-15C2-47C9-91B0-DEC1F388CB62");
|
|
167
|
public static UUID uuidTu = UUID.fromString("DB98809B-EF22-413B-B1EA-A79C4E1C4903");
|
|
168
|
public static UUID uuidAu_A = UUID.fromString("AE65867C-00F6-406C-A315-B3E4CC9A93D2");
|
|
169
|
public static UUID uuidAu_L = UUID.fromString("78146B6E-E71A-46DA-8DBC-244CC648BBE7");
|
|
170
|
public static UUID uuidAz_C = UUID.fromString("D35B8259-CC76-4FB0-AFC0-6A23D657EE3E");
|
|
171
|
public static UUID uuidAz_F = UUID.fromString("0F8F470D-CA2A-4130-842A-0A0C6912A123");
|
|
172
|
public static UUID uuidAz_G = UUID.fromString("CFF9FC6D-E3B2-45B1-87A9-6FEFB029A12F");
|
|
173
|
public static UUID uuidAz_P = UUID.fromString("C8000982-19E8-492E-912D-59EB370E52C0");
|
|
174
|
public static UUID uuidAz_S = UUID.fromString("BD852931-47B3-466C-A422-4F312B913CA2");
|
|
175
|
public static UUID uuidAz_J = UUID.fromString("4A5CED9F-F078-44B3-94BF-F3EE79315236");
|
|
176
|
public static UUID uuidAz_M = UUID.fromString("B8C76F37-6483-474F-85AB-96399219DE57");
|
|
177
|
public static UUID uuidAz_T = UUID.fromString("7A52595F-DA5E-440A-B2BD-F63999CE979E");
|
|
178
|
public static UUID uuidBe_B = UUID.fromString("9E263401-ACEC-4E2E-AA89-4AAF56AE7180");
|
|
179
|
public static UUID uuidBe_L = UUID.fromString("AF71559C-7765-493C-8C9A-1248DFF28789");
|
|
180
|
public static UUID uuidBl_I = UUID.fromString("121B07A0-8031-4F22-B9B7-C334FC3204CE");
|
|
181
|
public static UUID uuidBl_M = UUID.fromString("E8E8EFDC-E9EB-4B26-9711-F986265AD114");
|
|
182
|
public static UUID uuidBl_N = UUID.fromString("D96DD8A7-4BD8-4ADF-8CDB-05873686DB1A");
|
|
183
|
public static UUID uuidBH = UUID.fromString("6A109EF5-3AC1-4C59-8599-08F944ABA499");
|
|
184
|
public static UUID uuidBy = UUID.fromString("5D972AF7-6AE2-44D1-840B-EDB1DBE8B7AC");
|
|
185
|
public static UUID uuidCa = UUID.fromString("CFA26682-B0AB-4FEB-9191-6AA098638382");
|
|
186
|
public static UUID uuidCa_F = UUID.fromString("0D8ED2C4-0313-464C-A5B4-EC0A52E45ADF");
|
|
187
|
public static UUID uuidCa_G = UUID.fromString("865D1319-B157-4D1A-BBF0-F56B7EB2ED96");
|
|
188
|
public static UUID uuidCa_C = UUID.fromString("486FCBED-84C4-4673-8724-9A8A4A6613AD");
|
|
189
|
public static UUID uuidCa_H = UUID.fromString("0B57C693-DB09-4D7F-9FA9-0DBBEFF3B3B6");
|
|
190
|
public static UUID uuidCa_L = UUID.fromString("A88D6DF4-7924-4BEC-BFA6-071BDA82A4B3");
|
|
191
|
public static UUID uuidCa_P = UUID.fromString("BBF04D1A-1FC0-4A7B-BF0B-7D7BF69D8392");
|
|
192
|
public static UUID uuidCa_T = UUID.fromString("BBAD170B-285D-4BEA-8C3F-C43894FB75FF");
|
|
193
|
public static UUID uuidCs = UUID.fromString("2ADA45F0-C7CC-4026-A8B1-B816971F0753");
|
|
194
|
public static UUID uuidCt = UUID.fromString("09B5728A-4775-4530-B362-9B1EF4A9E8C3");
|
|
195
|
public static UUID uuidEs = UUID.fromString("1011D427-401B-47EE-A42C-4C1698957D55");
|
|
196
|
public static UUID uuidGa_C = UUID.fromString("3653A4DC-1ADE-4237-A62C-4F0AC11E576F");
|
|
197
|
public static UUID uuidGa_F = UUID.fromString("860F92B6-5CDA-456B-964C-6162D1D08161");
|
|
198
|
public static UUID uuidGg_A = UUID.fromString("5FAD859B-7929-4D5F-B92C-95E3E0469BB2");
|
|
199
|
public static UUID uuidGg_D = UUID.fromString("6091C975-B946-4EF3-A18F-2E148EAE6A06");
|
|
200
|
public static UUID uuidGg_G = UUID.fromString("048799B0-D7B9-44C6-B2D1-5CA2A49FA175");
|
|
201
|
public static UUID uuidHs_A = UUID.fromString("EAED6C21-42E5-496D-B43E-C121F96FA672");
|
|
202
|
public static UUID uuidHs_G = UUID.fromString("35350D75-6952-48BD-B265-C005BC1B2909");
|
|
203
|
public static UUID uuidHs_S = UUID.fromString("264649F7-192D-4AE5-9840-81FC782F59F0");
|
|
204
|
public static UUID uuidIr = UUID.fromString("A3B35528-5FFD-43B1-B605-711807C1EC9F");
|
|
205
|
public static UUID uuidIt_I = UUID.fromString("E3BC327E-0B42-4439-811B-595BC55A8FF8");
|
|
206
|
public static UUID uuidIt_S = UUID.fromString("57F35807-8CFA-4698-BB04-AAD3549C12EB");
|
|
207
|
public static UUID uuidJo = UUID.fromString("567A537D-F2FA-43EF-A20A-AEC76723E269");
|
|
208
|
public static UUID uuidKz = UUID.fromString("F8ABE715-D859-4B6F-B8F1-DB1A847DEAC4");
|
|
209
|
public static UUID uuidLa = UUID.fromString("8E338882-2631-4AD6-BC53-799C698C807D");
|
|
210
|
public static UUID uuidLt = UUID.fromString("ECF200B6-B1DF-414F-B215-EDAC503B1A65");
|
|
211
|
public static UUID uuidMa_E = UUID.fromString("80980607-FBD8-46E3-BE56-05D997F2D331");
|
|
212
|
public static UUID uuidMa_S = UUID.fromString("B743AE57-DC0B-4CCC-B4D9-7BF51E579E8E");
|
|
213
|
public static UUID uuidMk = UUID.fromString("0CE83170-2FA7-4C72-81F7-7FFF17343E48");
|
|
214
|
public static UUID uuidMd = UUID.fromString("2CFB90B1-0BA0-4578-AD11-AAD5AAB62899");
|
|
215
|
public static UUID uuidMd_D = UUID.fromString("DBE1F3CA-4C7C-4062-AC1E-ADE0C17DCA52");
|
|
216
|
public static UUID uuidMd_M = UUID.fromString("4658DADD-60FE-46D8-94E3-C6A6C4646105");
|
|
217
|
public static UUID uuidMd_P = UUID.fromString("2C41EB67-A330-4214-B452-6E6741262CE5");
|
|
218
|
public static UUID uuidSi_M = UUID.fromString("2920D738-54A1-49CE-AF3A-9CB742064587");
|
|
219
|
public static UUID uuidMo = UUID.fromString("64F98B98-1050-42C6-B2C7-F72DA642E4D5");
|
|
220
|
public static UUID uuidRf = UUID.fromString("4B6BDFEE-2BCB-4638-99CF-0F9612FA4787");
|
|
221
|
public static UUID uuidRf_C = UUID.fromString("1FFAF0B5-6311-4BF6-977F-8940622C4986");
|
|
222
|
public static UUID uuidRf_E = UUID.fromString("4280A0F6-298E-4B3C-8CE8-56A1208183F7");
|
|
223
|
public static UUID uuidRf_K = UUID.fromString("D9559D9A-1798-4496-8671-DE667CC30EC0");
|
|
224
|
public static UUID uuidRf_CS = UUID.fromString("6E886ACC-22C9-4C63-BEA5-A51AD84AF3D1");
|
|
225
|
public static UUID uuidRf_N = UUID.fromString("B0D8F65E-B5A4-4C0B-A5EF-54CC9F378CC6");
|
|
226
|
public static UUID uuidRf_NW = UUID.fromString("06CC9983-B444-4322-A03E-9A7A2AF1D4AD");
|
|
227
|
public static UUID uuidRf_A = UUID.fromString("1786C13D-D26D-49E3-BA60-E3F3E7852713");
|
|
228
|
public static UUID uuidRf_S = UUID.fromString("6AAB10D5-05E9-470A-8AF5-B6F8D48A71EC");
|
|
229
|
public static UUID uuidSk = UUID.fromString("09267309-E771-4BD7-A67F-B6B4321546E0");
|
|
230
|
public static UUID uuidSl = UUID.fromString("BC242D21-98CA-402C-BDB7-3ED347C7BDFD");
|
|
231
|
public static UUID uuidSy = UUID.fromString("A5974D4B-F878-422C-A7A8-A1D8268109EF");
|
|
232
|
public static UUID uuidUk_U = UUID.fromString("4A6C5155-154E-4B0D-AC73-550B51CCE374");
|
|
233
|
public static UUID uuidSM = UUID.fromString("AC360FC1-30F4-444A-92EB-B55BF98B8E97");
|
|
234
|
public static UUID uuidYu_K = UUID.fromString("F3F05E88-99AF-48FA-92EF-1A169BCC7ACF");
|
|
235
|
public static UUID uuidCg = UUID.fromString("38A4FD15-40D6-43F4-9685-F87465FDBD3F");
|
|
236
|
public static UUID uuidSr = UUID.fromString("468CFEA2-008F-40CF-B2C8-ADF5C09C0FA4");
|
|
237
|
public static UUID uuidIJ = UUID.fromString("9351B972-0C0B-4A97-87B1-4CC11E67D21E");
|
|
238
|
public static UUID uuidLS = UUID.fromString("F7BFDAE0-3DD9-4FC4-9B0B-0BF203B94031");
|
|
239
|
public static UUID uuidRs = UUID.fromString("C4A898CE-0F32-44FE-A8A3-278E11A4BA53");
|
|
240
|
public static UUID uuidSi = UUID.fromString("DB1FACF2-58A5-483E-9B2A-EB4290CA1B71");
|
|
241
|
public static UUID uuidAz_L = UUID.fromString("F5AEF252-C4F8-4ECC-9B6E-4821DB7ADECF");
|
|
242
|
public static UUID uuidHb_E = UUID.fromString("1D400E37-F39A-4CAE-8885-CF485B900CC5");
|
|
243
|
public static UUID uuidHb_N = UUID.fromString("B1D514DA-B9E6-4F0E-ACE4-18FB061FC132");
|
|
244
|
public static UUID uuidGa_M = UUID.fromString("E73942F0-292A-4F6A-8B2F-15AFE8634319");
|
|
245
|
public static UUID uuidMa_M = UUID.fromString("D9F7DFFC-0E76-4790-9AAE-B7AEB5AD76ED");
|
|
246
|
public static UUID uuidRs_N = UUID.fromString("44F262E3-5091-4D28-8081-440D3978FB0B");
|
|
247
|
public static UUID uuidRs_B = UUID.fromString("A575D608-DD53-4C01-B2AF-5067D0711F64");
|
|
248
|
public static UUID uuidRs_C = UUID.fromString("DA4E9CC3-B1CC-403A-81FF-BCC5D9FADBD1");
|
|
249
|
public static UUID uuidRs_W = UUID.fromString("EFABC8FD-0B3C-475B-B532-E1CA0BA0BDBB");
|
|
250
|
public static UUID uuidRs_E = UUID.fromString("7E0F8FA3-5DB9-48F0-9FA8-87FCAB3EAA53");
|
|
251
|
public static UUID uuidAE = UUID.fromString("C8FCD4E0-E1A2-4A7D-8EE2-6F397F5C546C");
|
|
252
|
public static UUID uuidAE_T = UUID.fromString("AF83B475-BB35-4594-8380-EA64B4313091");
|
|
253
|
public static UUID uuidRs_K = UUID.fromString("2188E3A5-0446-47C8-B11B-B4B2B9A71C75");
|
|
254
|
public static UUID uuidCc = UUID.fromString("05B0DD06-30F8-477D-BF4C-30D9DEF56320");
|
|
255
|
public static UUID uuidBt = UUID.fromString("EE13FB74-F3AC-46B1-9F23-6A25AC504446");
|
|
256
|
public static UUID uuidTcs = UUID.fromString("904C3980-B98D-422E-A195-95F4F41FC734");
|
|
257
|
|
|
258
|
|
|
259
|
//salvador
|
|
260
|
public static UUID uuidSalvadorAreas = UUID.fromString("8ef90ca3-77d7-4adc-8bbc-1eb354e61b65");
|
|
261
|
|
|
262
|
|
|
263
|
|
|
264
|
//language areas
|
|
265
|
// public static final UUID uuidUkraineAndCrimea = UUID.fromString("99d4d1c2-09f6-416e-86a3-bdde5cae52af");
|
|
266
|
public static final UUID uuidAzerbaijanNakhichevan = UUID.fromString("232fbef0-9f4a-4cab-8ac1-e14c717e9de6");
|
|
267
|
|
|
268
|
//Marker Types
|
|
269
|
public static final UUID uuidMisappliedCommonName = UUID.fromString("25f5cfc3-16ab-4aba-a008-0db0f2cf7f9d");
|
|
270
|
public static final UUID uuidEurArea = UUID.fromString("71dd0368-835c-4b53-889a-2bf316e10297");
|
|
271
|
public static final UUID uuidEurMedArea = UUID.fromString("aa6a5b25-3ee3-4771-b4d1-b91918f23fa5");
|
|
272
|
public static final UUID uuidHiddenArea = UUID.fromString("0318c67d-e323-4e9c-bffb-bc0c7f8f9f40");
|
|
273
|
public static final UUID uuidTaxonomicallyValueless = UUID.fromString("e07060cc-5a51-471f-863b-01011e3142fb");
|
|
274
|
public static final UUID uuidProbablyTaxonomicallyValueless = UUID.fromString("3b8b620e-986d-4a87-8070-1884a51c6bad");
|
|
275
|
|
|
276
|
//Extension Types
|
|
277
|
public static final UUID uuidSpeciesExpertName = UUID.fromString("2e8153d2-7412-49e4-87e1-5c38f4c5153a");
|
|
278
|
public static final UUID uuidExpertName = UUID.fromString("24becb79-a90c-47d3-be35-efc87bb48fd3");
|
|
279
|
|
|
280
|
public static final UUID DETAIL_EXT_UUID = UUID.fromString("c3959b4f-d876-4b7a-a739-9260f4cafd1c");
|
|
281
|
public static final UUID ID_IN_SOURCE_EXT_UUID = UUID.fromString("23dac094-e793-40a4-bad9-649fc4fcfd44");
|
|
282
|
public static final UUID uuidIsoCode = UUID.fromString("048b8153-e3ee-451c-a72c-f1c8bc291c3e");
|
|
283
|
public static final UUID uuidTdwgAreaCode = UUID.fromString("73ad0288-b71b-4a14-9c2e-7f81f1e64a36");
|
|
284
|
public static final UUID uuidMclCode = UUID.fromString("aa27083a-6a96-42aa-a2f8-5541cf057067");
|
|
285
|
|
|
286
|
//Area Level
|
|
287
|
public static final UUID uuidEuroMedAreaLevelTop = UUID.fromString("190d5758-4b96-4016-9412-6dc9c36ef5fd");
|
|
288
|
public static final UUID uuidEuroMedAreaLevelFirst = UUID.fromString("d21503e3-875e-4abc-82ec-f812e3cfea84");
|
|
289
|
public static final UUID uuidEuroMedAreaLevelSecond = UUID.fromString("97ac0bf5-b31c-487a-8ed5-a576f46c902c");
|
|
290
|
|
|
291
|
//languages
|
|
292
|
public static final UUID uuidLangMajorcan = UUID.fromString("82d696d7-cb4e-49de-ac89-63a0e12ca766");
|
|
293
|
|
|
294
|
//REFERENCES
|
|
295
|
public static int REF_ARTICLE = 1;
|
|
296
|
public static int REF_PART_OF_OTHER_TITLE = 2;
|
|
297
|
public static int REF_BOOK = 3;
|
|
298
|
public static int REF_DATABASE = 4;
|
|
299
|
public static int REF_INFORMAL = 5;
|
|
300
|
public static int REF_NOT_APPLICABLE = 6;
|
|
301
|
public static int REF_WEBSITE = 7;
|
|
302
|
public static int REF_CD = 8;
|
|
303
|
public static int REF_JOURNAL = 9;
|
|
304
|
public static int REF_UNKNOWN = 10;
|
|
305
|
public static int REF_PRINT_SERIES = 55;
|
|
306
|
public static int REF_CONFERENCE_PROCEEDINGS = 56;
|
|
307
|
public static int REF_JOURNAL_VOLUME = 57;
|
|
308
|
|
|
309
|
|
|
310
|
|
|
311
|
//NameStatus
|
|
312
|
public static int NAME_ST_NOM_INVAL = 1;
|
|
313
|
public static int NAME_ST_NOM_ILLEG = 2;
|
|
314
|
public static int NAME_ST_NOM_NUD = 3;
|
|
315
|
public static int NAME_ST_NOM_REJ = 4;
|
|
316
|
public static int NAME_ST_NOM_REJ_PROP = 5;
|
|
317
|
public static int NAME_ST_NOM_UTIQUE_REJ = 6;
|
|
318
|
public static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
|
|
319
|
public static int NAME_ST_NOM_CONS = 8;
|
|
320
|
public static int NAME_ST_NOM_CONS_PROP = 9;
|
|
321
|
public static int NAME_ST_ORTH_CONS = 10;
|
|
322
|
public static int NAME_ST_ORTH_CONS_PROP = 11;
|
|
323
|
public static int NAME_ST_NOM_SUPERFL = 12;
|
|
324
|
public static int NAME_ST_NOM_AMBIG = 13;
|
|
325
|
public static int NAME_ST_NOM_PROVIS = 14;
|
|
326
|
public static int NAME_ST_NOM_DUB = 15;
|
|
327
|
public static int NAME_ST_NOM_NOV = 16;
|
|
328
|
public static int NAME_ST_NOM_CONFUS = 17;
|
|
329
|
public static int NAME_ST_NOM_ALTERN = 18;
|
|
330
|
public static int NAME_ST_COMB_INVAL = 19;
|
|
331
|
|
|
332
|
|
|
333
|
//NameRelationShip
|
|
334
|
public static int NAME_REL_IS_BASIONYM_FOR = 1;
|
|
335
|
public static int NAME_REL_IS_LATER_HOMONYM_OF = 2;
|
|
336
|
public static int NAME_REL_IS_REPLACED_SYNONYM_FOR = 3;
|
|
337
|
public static int NAME_REL_IS_VALIDATION_OF = 4;
|
|
338
|
public static int NAME_REL_IS_LATER_VALIDATION_OF = 5;
|
|
339
|
public static int NAME_REL_IS_TYPE_OF = 6;
|
|
340
|
public static int NAME_REL_IS_CONSERVED_TYPE_OF =7;
|
|
341
|
public static int NAME_REL_IS_REJECTED_TYPE_OF = 8;
|
|
342
|
public static int NAME_REL_IS_FIRST_PARENT_OF = 9;
|
|
343
|
public static int NAME_REL_IS_SECOND_PARENT_OF = 10;
|
|
344
|
public static int NAME_REL_IS_FEMALE_PARENT_OF = 11;
|
|
345
|
public static int NAME_REL_IS_MALE_PARENT_OF = 12;
|
|
346
|
public static int NAME_REL_IS_CONSERVED_AGAINST =13;
|
|
347
|
public static int NAME_REL_IS_REJECTED_IN_FAVOUR_OF = 14;
|
|
348
|
public static int NAME_REL_IS_TREATED_AS_LATER_HOMONYM_OF = 15;
|
|
349
|
public static int NAME_REL_IS_ORTHOGRAPHIC_VARIANT_OF = 16;
|
|
350
|
public static int NAME_REL_IS_ALTERNATIVE_NAME_FOR = 17;
|
|
351
|
public static int NAME_REL_HAS_SAME_TYPE_AS = 18;
|
|
352
|
public static int NAME_REL_IS_LECTOTYPE_OF = 61;
|
|
353
|
public static int NAME_REL_TYPE_NOT_DESIGNATED = 62;
|
|
354
|
|
|
355
|
//NameFacts
|
|
356
|
public static String NAME_FACT_PROTOLOGUE = "Protologue";
|
|
357
|
public static String NAME_FACT_ALSO_PUBLISHED_IN = "Also published in";
|
|
358
|
public static String NAME_FACT_BIBLIOGRAPHY = "Bibliography";
|
|
359
|
|
|
360
|
//TaxonRelationShip
|
|
361
|
public static int TAX_REL_IS_INCLUDED_IN = 1;
|
|
362
|
public static int TAX_REL_IS_SYNONYM_OF = 2;
|
|
363
|
public static int TAX_REL_IS_MISAPPLIED_NAME_OF = 3;
|
|
364
|
public static int TAX_REL_IS_PROPARTE_SYN_OF = 4;
|
|
365
|
public static int TAX_REL_IS_PARTIAL_SYN_OF = 5;
|
|
366
|
public static int TAX_REL_IS_HETEROTYPIC_SYNONYM_OF = 6;
|
|
367
|
public static int TAX_REL_IS_HOMOTYPIC_SYNONYM_OF = 7;
|
|
368
|
public static int TAX_REL_IS_PROPARTE_HOMOTYPIC_SYNONYM_OF = 101;
|
|
369
|
public static int TAX_REL_IS_PROPARTE_HETEROTYPIC_SYNONYM_OF = 102;
|
|
370
|
public static int TAX_REL_IS_PARTIAL_HOMOTYPIC_SYNONYM_OF = 103;
|
|
371
|
public static int TAX_REL_IS_PARTIAL_HETEROTYPIC_SYNONYM_OF = 104;
|
|
372
|
public static int TAX_REL_IS_PRO_PARTE_MISAPPLIED_NAME_OF = 110; //does not really exist but as only used in BM export which is not in use anymore it serves as a placeholder for consistency
|
|
373
|
|
|
374
|
|
|
375
|
|
|
376
|
//TaxonStatus
|
|
377
|
public static int T_STATUS_ACCEPTED = 1;
|
|
378
|
public static int T_STATUS_SYNONYM = 2;
|
|
379
|
public static int T_STATUS_PARTIAL_SYN = 3;
|
|
380
|
public static int T_STATUS_PRO_PARTE_SYN = 4;
|
|
381
|
public static int T_STATUS_UNRESOLVED = 5;
|
|
382
|
public static int T_STATUS_ORPHANED = 6;
|
|
383
|
|
|
384
|
|
|
385
|
//Facts
|
|
386
|
public static int FACT_DESCRIPTION = 1;
|
|
387
|
public static int FACT_GROWTH_FORM = 2;
|
|
388
|
public static int FACT_HARDINESS = 3;
|
|
389
|
public static int FACT_ECOLOGY = 4;
|
|
390
|
public static int FACT_PHENOLOGY = 5;
|
|
391
|
public static int FACT_KARYOLOGY = 6;
|
|
392
|
public static int FACT_ILLUSTRATION = 7;
|
|
393
|
public static int FACT_IDENTIFICATION = 8;
|
|
394
|
public static int FACT_OBSERVATION = 9;
|
|
395
|
public static int FACT_DISTRIBUTION_EM = 10;
|
|
396
|
public static int FACT_DISTRIBUTION_WORLD = 11;
|
|
397
|
//E+M
|
|
398
|
public static final UUID uuidFeatureMaps = UUID.fromString("8367730e-f3c3-4361-8360-a2057e4295ed");
|
|
399
|
public static final UUID uuidFeatureConservationStatus = UUID.fromString("a32f33cd-1966-4a22-986c-94c5e688bbd1");
|
|
400
|
public static final UUID uuidFeatureUse = UUID.fromString("199bbbd8-2db6-4335-b454-2e92ae02b699");
|
|
401
|
public static final UUID uuidFeatureComments = UUID.fromString("31cc2b92-5cad-44e9-b50f-b8af591a527c");
|
|
402
|
public static final UUID uuidFeatureDistrEM = UUID.fromString("a5ba7e7f-ca7f-4f50-afc7-73e76b3231d4");
|
|
403
|
public static final UUID uuidFeatureDistrWorld = UUID.fromString("e4e24080-7017-47e6-924e-d2560fa68fb8");
|
|
404
|
public static final UUID uuidFeatureEditorBrackets = UUID.fromString("b3b5bc1a-7ba8-4a39-9c0d-63ba599eb5d8");
|
|
405
|
public static final UUID uuidFeatureEditorParenthesis = UUID.fromString("6ee10a2e-ff02-4cf4-a520-89630edc5b44");
|
|
406
|
public static final UUID uuidFeatureInedited = UUID.fromString("c93e2968-bc52-4165-9755-ce37611faf01");
|
|
407
|
public static final UUID uuidFeatureCommentsEditing = UUID.fromString("7a155021-158a-48bb-81d0-9a72b718e2de");
|
|
408
|
|
|
409
|
//Salvador
|
|
410
|
public static final UUID uuidFeatureDistributionGlobal = UUID.fromString("9bd09ada-7bb3-4fe5-be35-dc4564bdd161");
|
|
411
|
public static final UUID uuidReporteParaElSalvador = UUID.fromString("1869a1a6-becb-468e-bc62-b2473f7d9391");
|
|
412
|
public static final UUID uuidFeatureOtherReferences = UUID.fromString("f5dc30bd-a5b1-436d-8cc0-69a999e61590");
|
|
413
|
public static final UUID uuidFeatureTaxonIllustrationReferences = UUID.fromString("6062122b-07c7-44e4-a9af-7daea0005819");
|
|
414
|
public static final UUID uuidFeatureSpecimenNotes = UUID.fromString("3c657936-f51a-4bfa-9ea4-287926ac63e5");
|
|
415
|
public static final UUID uuidFeatureEditorialNotes = UUID.fromString("5f971b66-1bc7-4b12-923e-2b4ee8b3737d");
|
|
416
|
public static final UUID uuidFeatureHabitatSalvador = UUID.fromString("d03a5e2c-fd93-4fff-b0b3-e16cefbb9847");
|
|
417
|
|
|
418
|
public static UUID uuidNomStatusCombIned = UUID.fromString("dde8a2e7-bf9e-42ec-b186-d5bde9c9c128");
|
|
419
|
public static UUID uuidNomStatusSpNovIned = UUID.fromString("1a359ca1-9364-43bc-93e4-834bdcd52b72");
|
|
420
|
public static UUID uuidNomStatusNomOrthCons = UUID.fromString("0f838183-ffa0-4014-928e-0e3a27eb3918");
|
|
421
|
|
|
422
|
static NomenclaturalStatusType nomStatusCombIned;
|
|
423
|
static NomenclaturalStatusType nomStatusSpNovIned;
|
|
424
|
static NomenclaturalStatusType nomStatusNomOrthCons;
|
|
425
|
|
|
426
|
public static NomenclaturalStatusType nomStatusTypeAbbrev2NewNomStatusType(String nomStatus){
|
|
427
|
NomenclaturalStatusType result = null;
|
|
428
|
if (nomStatus == null){
|
|
429
|
return null;
|
|
430
|
}else if (nomStatus.equalsIgnoreCase("comb. ined.")){
|
|
431
|
if (nomStatusCombIned == null){
|
|
432
|
nomStatusCombIned = NomenclaturalStatusType.NewInstance("comb. ined.", "comb. ined.", "comb. ined.", Language.LATIN());
|
|
433
|
nomStatusCombIned.setUuid(uuidNomStatusCombIned);
|
|
434
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusCombIned);
|
|
435
|
}
|
|
436
|
result = nomStatusCombIned;
|
|
437
|
}else if (nomStatus.equalsIgnoreCase("sp. nov. ined.")){
|
|
438
|
if (nomStatusSpNovIned == null){
|
|
439
|
nomStatusSpNovIned = NomenclaturalStatusType.NewInstance("sp. nov. ined.", "sp. nov. ined.", "sp. nov. ined.", Language.LATIN());
|
|
440
|
nomStatusSpNovIned.setUuid(uuidNomStatusSpNovIned);
|
|
441
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusSpNovIned);
|
|
442
|
}
|
|
443
|
result = nomStatusSpNovIned;
|
|
444
|
}else if (nomStatus.equalsIgnoreCase("nom. & orth. cons.")){
|
|
445
|
if (nomStatusNomOrthCons == null){
|
|
446
|
nomStatusNomOrthCons = NomenclaturalStatusType.NewInstance("nom. & orth. cons.", "nom. & orth. cons.", "nom. & orth. cons.", Language.LATIN());
|
|
447
|
nomStatusNomOrthCons.setUuid(uuidNomStatusNomOrthCons);
|
|
448
|
NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusNomOrthCons);
|
|
449
|
}
|
|
450
|
result = nomStatusNomOrthCons;
|
|
451
|
}
|
|
452
|
return result;
|
|
453
|
}
|
|
454
|
|
|
455
|
|
|
456
|
public static NomenclaturalStatus nomStatusFkToNomStatus(int nomStatusFk, String nomStatusLabel) throws UnknownCdmTypeException{
|
|
457
|
if (nomStatusFk == NAME_ST_NOM_INVAL){
|
|
458
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.INVALID());
|
|
459
|
}else if (nomStatusFk == NAME_ST_NOM_ILLEG){
|
|
460
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ILLEGITIMATE());
|
|
461
|
}else if (nomStatusFk == NAME_ST_NOM_NUD){
|
|
462
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.NUDUM());
|
|
463
|
}else if (nomStatusFk == NAME_ST_NOM_REJ){
|
|
464
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.REJECTED());
|
|
465
|
}else if (nomStatusFk == NAME_ST_NOM_REJ_PROP){
|
|
466
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.REJECTED_PROP());
|
|
467
|
}else if (nomStatusFk == NAME_ST_NOM_UTIQUE_REJ){
|
|
468
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.UTIQUE_REJECTED());
|
|
469
|
}else if (nomStatusFk == NAME_ST_NOM_UTIQUE_REJ_PROP){
|
|
470
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.UTIQUE_REJECTED_PROP());
|
|
471
|
}else if (nomStatusFk == NAME_ST_NOM_CONS){
|
|
472
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONSERVED());
|
|
473
|
}else if (nomStatusFk == NAME_ST_NOM_CONS_PROP){
|
|
474
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONSERVED_PROP());
|
|
475
|
}else if (nomStatusFk == NAME_ST_ORTH_CONS){
|
|
476
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED());
|
|
477
|
}else if (nomStatusFk == NAME_ST_ORTH_CONS_PROP){
|
|
478
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP());
|
|
479
|
}else if (nomStatusFk == NAME_ST_NOM_SUPERFL){
|
|
480
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.SUPERFLUOUS());
|
|
481
|
}else if (nomStatusFk == NAME_ST_NOM_AMBIG){
|
|
482
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.AMBIGUOUS());
|
|
483
|
}else if (nomStatusFk == NAME_ST_NOM_PROVIS){
|
|
484
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.PROVISIONAL());
|
|
485
|
}else if (nomStatusFk == NAME_ST_NOM_DUB){
|
|
486
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.DOUBTFUL());
|
|
487
|
}else if (nomStatusFk == NAME_ST_NOM_NOV){
|
|
488
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.NOVUM());
|
|
489
|
}else if (nomStatusFk == NAME_ST_NOM_CONFUS){
|
|
490
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.CONFUSUM());
|
|
491
|
}else if (nomStatusFk == NAME_ST_NOM_ALTERN){
|
|
492
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ALTERNATIVE());
|
|
493
|
}else if (nomStatusFk == NAME_ST_COMB_INVAL){
|
|
494
|
return NomenclaturalStatus.NewInstance(NomenclaturalStatusType.COMBINATION_INVALID());
|
|
495
|
}else {
|
|
496
|
NomenclaturalStatusType statusType = nomStatusTypeAbbrev2NewNomStatusType(nomStatusLabel);
|
|
497
|
NomenclaturalStatus result = NomenclaturalStatus.NewInstance(statusType);
|
|
498
|
if (result != null){
|
|
499
|
return result;
|
|
500
|
}
|
|
501
|
throw new UnknownCdmTypeException("Unknown NomenclaturalStatus (id=" + Integer.valueOf(nomStatusFk).toString() + ")");
|
|
502
|
}
|
|
503
|
}
|
|
504
|
|
|
505
|
public static UUID getEMAreaUuid(String areaId){
|
|
506
|
if (areaId == null){
|
|
507
|
logger.warn("No AreaId given");
|
|
508
|
return null;
|
|
509
|
}else if (areaId.equals("EM")){return uuidEM;
|
|
510
|
}else if (areaId.equals("EUR")){return uuidEUR;
|
|
511
|
}else if (areaId.equals("14")){return uuid14;
|
|
512
|
}else if (areaId.equals("20")){return uuid20;
|
|
513
|
}else if (areaId.equals("21")){return uuid21;
|
|
514
|
}else if (areaId.equals("33")){return uuid33;
|
|
515
|
}else if (areaId.equals("Da")){return uuidDa;
|
|
516
|
}else if (areaId.equals("Fe")){return uuidFe;
|
|
517
|
}else if (areaId.equals("Fa")){return uuidFa;
|
|
518
|
}else if (areaId.equals("Br")){return uuidBr;
|
|
519
|
}else if (areaId.equals("Is")){return uuidIs;
|
|
520
|
}else if (areaId.equals("Hb")){return uuidHb;
|
|
521
|
}else if (areaId.equals("No")){return uuidNo;
|
|
522
|
}else if (areaId.equals("Sb")){return uuidSb;
|
|
523
|
}else if (areaId.equals("Su")){return uuidSu;
|
|
524
|
}else if (areaId.equals("Au")){return uuidAu;
|
|
525
|
}else if (areaId.equals("Be")){return uuidBe;
|
|
526
|
}else if (areaId.equals("Cz")){return uuidCz;
|
|
527
|
}else if (areaId.equals("Ge")){return uuidGe;
|
|
528
|
}else if (areaId.equals("Hu")){return uuidHu;
|
|
529
|
}else if (areaId.equals("Ho")){return uuidHo;
|
|
530
|
}else if (areaId.equals("Po")){return uuidPo;
|
|
531
|
}else if (areaId.equals("He")){return uuidHe;
|
|
532
|
}else if (areaId.equals("Bl")){return uuidBl;
|
|
533
|
}else if (areaId.equals("Co")){return uuidCo;
|
|
534
|
}else if (areaId.equals("Ga")){return uuidGa;
|
|
535
|
}else if (areaId.equals("Lu")){return uuidLu;
|
|
536
|
}else if (areaId.equals("Sa")){return uuidSa;
|
|
537
|
}else if (areaId.equals("Hs")){return uuidHs;
|
|
538
|
}else if (areaId.equals("Al")){return uuidAl;
|
|
539
|
}else if (areaId.equals("Bu")){return uuidBu;
|
|
540
|
}else if (areaId.equals("Gr")){return uuidGr;
|
|
541
|
}else if (areaId.equals("It")){return uuidIt;
|
|
542
|
}else if (areaId.equals("Cr")){return uuidCr;
|
|
543
|
}else if (areaId.equals("Rm")){return uuidRm;
|
|
544
|
}else if (areaId.equals("Si(S)")){return uuidSi_S;
|
|
545
|
}else if (areaId.equals("Tu(E)")){return uuidTu_E;
|
|
546
|
}else if (areaId.equals("Ju")){return uuidJu;
|
|
547
|
}else if (areaId.equals("Uk(K)")){return uuidUk_K;
|
|
548
|
}else if (areaId.equals("Uk")){return uuidUk;
|
|
549
|
}else if (areaId.equals("Ag")){return uuidAg;
|
|
550
|
}else if (areaId.equals("Eg")){return uuidEg;
|
|
551
|
}else if (areaId.equals("Li")){return uuidLi;
|
|
552
|
}else if (areaId.equals("Ma")){return uuidMa;
|
|
553
|
}else if (areaId.equals("Tn")){return uuidTn;
|
|
554
|
}else if (areaId.equals("Az")){return uuidAz;
|
|
555
|
}else if (areaId.equals("Sg")){return uuidSg;
|
|
556
|
}else if (areaId.equals("Ab")){return uuidAb;
|
|
557
|
}else if (areaId.equals("Ar")){return uuidAr;
|
|
558
|
}else if (areaId.equals("Ab(A)")){return uuidAb_A;
|
|
559
|
}else if (areaId.equals("Gg")){return uuidGg;
|
|
560
|
}else if (areaId.equals("Ab(N)")){return uuidAb_N;
|
|
561
|
}else if (areaId.equals("Cy")){return uuidCy;
|
|
562
|
}else if (areaId.equals("AE(G)")){return uuidAE_G;
|
|
563
|
}else if (areaId.equals("Le")){return uuidLe;
|
|
564
|
}else if (areaId.equals("Sn")){return uuidSn;
|
|
565
|
}else if (areaId.equals("Tu(A)")){return uuidTu_A;
|
|
566
|
}else if (areaId.equals("Tu")){return uuidTu;
|
|
567
|
}else if (areaId.equals("Au(A)")){return uuidAu_A;
|
|
568
|
}else if (areaId.equals("Au(L)")){return uuidAu_L;
|
|
569
|
}else if (areaId.equals("Az(C)")){return uuidAz_C;
|
|
570
|
}else if (areaId.equals("Az(F)")){return uuidAz_F;
|
|
571
|
}else if (areaId.equals("Az(G)")){return uuidAz_G;
|
|
572
|
}else if (areaId.equals("Az(P)")){return uuidAz_P;
|
|
573
|
}else if (areaId.equals("Az(S)")){return uuidAz_S;
|
|
574
|
}else if (areaId.equals("Az(J)")){return uuidAz_J;
|
|
575
|
}else if (areaId.equals("Az(M)")){return uuidAz_M;
|
|
576
|
}else if (areaId.equals("Az(T)")){return uuidAz_T;
|
|
577
|
}else if (areaId.equals("Be(B)")){return uuidBe_B;
|
|
578
|
}else if (areaId.equals("Be(L)")){return uuidBe_L;
|
|
579
|
}else if (areaId.equals("Bl(I)")){return uuidBl_I;
|
|
580
|
}else if (areaId.equals("Bl(M)")){return uuidBl_M;
|
|
581
|
}else if (areaId.equals("Bl(N)")){return uuidBl_N;
|
|
582
|
}else if (areaId.equals("BH")){return uuidBH;
|
|
583
|
}else if (areaId.equals("By")){return uuidBy;
|
|
584
|
}else if (areaId.equals("Ca")){return uuidCa;
|
|
585
|
}else if (areaId.equals("Ca(F)")){return uuidCa_F;
|
|
586
|
}else if (areaId.equals("Ca(G)")){return uuidCa_G;
|
|
587
|
}else if (areaId.equals("Ca(C)")){return uuidCa_C;
|
|
588
|
}else if (areaId.equals("Ca(H)")){return uuidCa_H;
|
|
589
|
}else if (areaId.equals("Ca(L)")){return uuidCa_L;
|
|
590
|
}else if (areaId.equals("Ca(P)")){return uuidCa_P;
|
|
591
|
}else if (areaId.equals("Ca(T)")){return uuidCa_T;
|
|
592
|
}else if (areaId.equals("Cs")){return uuidCs;
|
|
593
|
}else if (areaId.equals("Ct")){return uuidCt;
|
|
594
|
}else if (areaId.equals("Es")){return uuidEs;
|
|
595
|
}else if (areaId.equals("Ga(C)")){return uuidGa_C;
|
|
596
|
}else if (areaId.equals("Ga(F)")){return uuidGa_F;
|
|
597
|
}else if (areaId.equals("Gg(A)")){return uuidGg_A;
|
|
598
|
}else if (areaId.equals("Gg(D)")){return uuidGg_D;
|
|
599
|
}else if (areaId.equals("Gg(G)")){return uuidGg_G;
|
|
600
|
}else if (areaId.equals("Hs(A)")){return uuidHs_A;
|
|
601
|
}else if (areaId.equals("Hs(G)")){return uuidHs_G;
|
|
602
|
}else if (areaId.equals("Hs(S)")){return uuidHs_S;
|
|
603
|
}else if (areaId.equals("Ir")){return uuidIr;
|
|
604
|
}else if (areaId.equals("It(I)")){return uuidIt_I;
|
|
605
|
}else if (areaId.equals("It(S)")){return uuidIt_S;
|
|
606
|
}else if (areaId.equals("Jo")){return uuidJo;
|
|
607
|
}else if (areaId.equals("Kz")){return uuidKz;
|
|
608
|
}else if (areaId.equals("La")){return uuidLa;
|
|
609
|
}else if (areaId.equals("Lt")){return uuidLt;
|
|
610
|
}else if (areaId.equals("Ma(E)")){return uuidMa_E;
|
|
611
|
}else if (areaId.equals("Ma(S)")){return uuidMa_S;
|
|
612
|
}else if (areaId.equals("Mk")){return uuidMk;
|
|
613
|
}else if (areaId.equals("Md")){return uuidMd;
|
|
614
|
}else if (areaId.equals("Md(D)")){return uuidMd_D;
|
|
615
|
}else if (areaId.equals("Md(M)")){return uuidMd_M;
|
|
616
|
}else if (areaId.equals("Md(P)")){return uuidMd_P;
|
|
617
|
}else if (areaId.equals("Si(M)")){return uuidSi_M;
|
|
618
|
}else if (areaId.equals("Mo")){return uuidMo;
|
|
619
|
}else if (areaId.equals("Rf")){return uuidRf;
|
|
620
|
}else if (areaId.equals("Rf(C)")){return uuidRf_C;
|
|
621
|
}else if (areaId.equals("Rf(E)")){return uuidRf_E;
|
|
622
|
}else if (areaId.equals("Rf(K)")){return uuidRf_K;
|
|
623
|
}else if (areaId.equals("Rf(CS)")){return uuidRf_CS;
|
|
624
|
}else if (areaId.equals("Rf(N)")){return uuidRf_N;
|
|
625
|
}else if (areaId.equals("Rf(NW)")){return uuidRf_NW;
|
|
626
|
}else if (areaId.equals("Rf(A)")){return uuidRf_A;
|
|
627
|
}else if (areaId.equals("Rf(S)")){return uuidRf_S;
|
|
628
|
}else if (areaId.equals("Sk")){return uuidSk;
|
|
629
|
}else if (areaId.equals("Sl")){return uuidSl;
|
|
630
|
}else if (areaId.equals("Sy")){return uuidSy;
|
|
631
|
}else if (areaId.equals("Uk(U)")){return uuidUk_U;
|
|
632
|
}else if (areaId.equals("SM")){return uuidSM;
|
|
633
|
}else if (areaId.equals("Yu(K)")){return uuidYu_K;
|
|
634
|
}else if (areaId.equals("Cg")){return uuidCg;
|
|
635
|
}else if (areaId.equals("Sr")){return uuidSr;
|
|
636
|
}else if (areaId.equals("IJ")){return uuidIJ;
|
|
637
|
}else if (areaId.equals("LS")){return uuidLS;
|
|
638
|
}else if (areaId.equals("Rs")){return uuidRs;
|
|
639
|
}else if (areaId.equals("Si")){return uuidSi;
|
|
640
|
}else if (areaId.equals("Az(L)")){return uuidAz_L;
|
|
641
|
}else if (areaId.equals("Hb(E)")){return uuidHb_E;
|
|
642
|
}else if (areaId.equals("Hb(N)")){return uuidHb_N;
|
|
643
|
}else if (areaId.equals("Ga(M)")){return uuidGa_M;
|
|
644
|
}else if (areaId.equals("Ma(M)")){return uuidMa_M;
|
|
645
|
}else if (areaId.equals("Rs(N)")){return uuidRs_N;
|
|
646
|
}else if (areaId.equals("Rs(B)")){return uuidRs_B;
|
|
647
|
}else if (areaId.equals("Rs(C)")){return uuidRs_C;
|
|
648
|
}else if (areaId.equals("Rs(W)")){return uuidRs_W;
|
|
649
|
}else if (areaId.equals("Rs(E)")){return uuidRs_E;
|
|
650
|
}else if (areaId.equals("AE")){return uuidAE;
|
|
651
|
}else if (areaId.equals("AE(T)")){return uuidAE_T;
|
|
652
|
}else if (areaId.equals("Rs(K)")){return uuidRs_K;
|
|
653
|
}else if (areaId.equals("Cc")){return uuidCc;
|
|
654
|
}else if (areaId.equals("Bt")){return uuidBt;
|
|
655
|
}else if (areaId.equals("Tcs")){return uuidTcs;
|
|
656
|
}else if (areaId.equals("Azores")){return null; //these are duplicates and are handled differently
|
|
657
|
}else if (areaId.equals("Canary Is.")){return null; //these are duplicates and are handled differently
|
|
658
|
}else{
|
|
659
|
logger.warn("Area not found: " + areaId);
|
|
660
|
return null;
|
|
661
|
}
|
|
662
|
|
|
663
|
}
|
|
664
|
|
|
665
|
|
|
666
|
//TypeDesignation
|
|
667
|
public static SpecimenTypeDesignationStatus typeStatusId2TypeStatus (int typeStatusId) throws UnknownCdmTypeException{
|
|
668
|
switch (typeStatusId){
|
|
669
|
case 0: return null;
|
|
670
|
case 1: return SpecimenTypeDesignationStatus.HOLOTYPE();
|
|
671
|
case 2: return SpecimenTypeDesignationStatus.LECTOTYPE();
|
|
672
|
case 3: return SpecimenTypeDesignationStatus.NEOTYPE();
|
|
673
|
case 4: return SpecimenTypeDesignationStatus.EPITYPE();
|
|
674
|
case 5: return SpecimenTypeDesignationStatus.ISOLECTOTYPE();
|
|
675
|
case 6: return SpecimenTypeDesignationStatus.ISONEOTYPE();
|
|
676
|
case 7: return SpecimenTypeDesignationStatus.ISOTYPE();
|
|
677
|
case 8: return SpecimenTypeDesignationStatus.PARANEOTYPE();
|
|
678
|
case 9: return SpecimenTypeDesignationStatus.PARATYPE();
|
|
679
|
case 10: return SpecimenTypeDesignationStatus.SECOND_STEP_LECTOTYPE();
|
|
680
|
case 11: return SpecimenTypeDesignationStatus.SECOND_STEP_NEOTYPE();
|
|
681
|
case 12: return SpecimenTypeDesignationStatus.SYNTYPE();
|
|
682
|
case 21: return SpecimenTypeDesignationStatus.ICONOTYPE();
|
|
683
|
case 22: return SpecimenTypeDesignationStatus.PHOTOTYPE();
|
|
684
|
default: {
|
|
685
|
throw new UnknownCdmTypeException("Unknown TypeDesignationStatus (id=" + Integer.valueOf(typeStatusId).toString() + ")");
|
|
686
|
}
|
|
687
|
}
|
|
688
|
}
|
|
689
|
|
|
690
|
//TypeDesignation
|
|
691
|
public static TaxonRelationshipType taxonRelId2TaxonRelType (int relTaxonTypeId, ResultWrapper<Boolean> isInverse, ResultWrapper<Boolean> isDoubtful) throws UnknownCdmTypeException{
|
|
692
|
isInverse.setValue(false);
|
|
693
|
switch (relTaxonTypeId){
|
|
694
|
case 0: return null;
|
|
695
|
case 11: return TaxonRelationshipType.CONGRUENT_TO();
|
|
696
|
case 12: isInverse.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
697
|
case 13: isInverse.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_INCLUDES();
|
|
698
|
case 14: return TaxonRelationshipType.INCLUDES();
|
|
699
|
case 15: return TaxonRelationshipType.CONGRUENT_OR_INCLUDES();
|
|
700
|
case 16: return TaxonRelationshipType.INCLUDED_OR_INCLUDES();
|
|
701
|
case 17: return TaxonRelationshipType.CONGRUENT_OR_INCLUDED_OR_INCLUDES();
|
|
702
|
case 18: return TaxonRelationshipType.OVERLAPS();
|
|
703
|
case 19: return TaxonRelationshipType.CONGRUENT_OR_OVERLAPS();
|
|
704
|
case 20: isInverse.setValue(true); return TaxonRelationshipType.INCLUDES_OR_OVERLAPS();
|
|
705
|
case 21: isInverse.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_INCLUDES_OR_OVERLAPS();
|
|
706
|
case 22: return TaxonRelationshipType.INCLUDES_OR_OVERLAPS();
|
|
707
|
case 23: return TaxonRelationshipType.CONGRUENT_OR_INCLUDES_OR_OVERLAPS();
|
|
708
|
case 24: return TaxonRelationshipType.INCLUDED_OR_INCLUDES_OR_OVERLAPS();
|
|
709
|
|
|
710
|
case 26: return TaxonRelationshipType.EXCLUDES();
|
|
711
|
|
|
712
|
//TODO other relationshipTypes
|
|
713
|
|
|
714
|
case 40: return TaxonRelationshipType.NOT_CONGRUENT_TO();
|
|
715
|
|
|
716
|
//how to implement this, what is a purely doubtful relationship ??
|
|
717
|
// case 42: isDoubtful.setValue(true); return TaxonRelationshipType.();
|
|
718
|
|
|
719
|
case 43: isDoubtful.setValue(true); return TaxonRelationshipType.CONGRUENT_TO();
|
|
720
|
case 44: isInverse.setValue(true);isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
721
|
case 46: isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDES();
|
|
722
|
case 48: isDoubtful.setValue(true); return TaxonRelationshipType.INCLUDED_OR_INCLUDES();
|
|
723
|
case 50: isDoubtful.setValue(true); return TaxonRelationshipType.OVERLAPS();
|
|
724
|
case 51: isDoubtful.setValue(true); return TaxonRelationshipType.CONGRUENT_OR_OVERLAPS();
|
|
725
|
case 58: isDoubtful.setValue(true); return TaxonRelationshipType.EXCLUDES();
|
|
726
|
|
|
727
|
|
|
728
|
default: {
|
|
729
|
throw new UnknownCdmTypeException("Unknown TypeDesignationStatus (id=" + Integer.valueOf(relTaxonTypeId).toString() + ")");
|
|
730
|
}
|
|
731
|
}
|
|
732
|
}
|
|
733
|
|
|
734
|
//TypeDesignation
|
|
735
|
public static HybridRelationshipType relNameId2HybridRel (int relNameId) throws UnknownCdmTypeException{
|
|
736
|
switch (relNameId){
|
|
737
|
case 0: return null;
|
|
738
|
case 9: return HybridRelationshipType.FIRST_PARENT();
|
|
739
|
case 10: return HybridRelationshipType.SECOND_PARENT();
|
|
740
|
case 11: return HybridRelationshipType.FEMALE_PARENT();
|
|
741
|
case 12: return HybridRelationshipType.MALE_PARENT();
|
|
742
|
default: {
|
|
743
|
throw new UnknownCdmTypeException("Unknown HybridRelationshipType (id=" + Integer.valueOf(relNameId).toString() + ")");
|
|
744
|
}
|
|
745
|
}
|
|
746
|
}
|
|
747
|
|
|
748
|
//OccStatus
|
|
749
|
public static PresenceAbsenceTerm occStatus2PresenceAbsence (int occStatusId) throws UnknownCdmTypeException{
|
|
750
|
switch (occStatusId){
|
|
751
|
case 0: return null;
|
|
752
|
case 110: return PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();
|
|
753
|
case 120: return PresenceAbsenceTerm.CULTIVATED();
|
|
754
|
case 210: return PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();
|
|
755
|
case 220: return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();
|
|
756
|
case 230: return PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED();
|
|
757
|
case 240: return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();
|
|
758
|
case 250: return PresenceAbsenceTerm.INTRODUCED();
|
|
759
|
case 260: return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();
|
|
760
|
case 270: return PresenceAbsenceTerm.CASUAL();
|
|
761
|
case 280: return PresenceAbsenceTerm.NATURALISED();
|
|
762
|
case 310: return PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR();
|
|
763
|
case 320: return PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE();
|
|
764
|
case 330: return PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE();
|
|
765
|
case 340: return PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE();
|
|
766
|
case 350: return PresenceAbsenceTerm.NATIVE();
|
|
767
|
case 999: {
|
|
768
|
logger.info("endemic for EM can not be transformed in legal status. Used 'PRESENT' instead");
|
|
769
|
//TODO preliminary
|
|
770
|
return PresenceAbsenceTerm.PRESENT();
|
|
771
|
}
|
|
772
|
default: {
|
|
773
|
throw new UnknownCdmTypeException("Unknown occurrence status (id=" + Integer.valueOf(occStatusId).toString() + ")");
|
|
774
|
}
|
|
775
|
}
|
|
776
|
}
|
|
777
|
|
|
778
|
|
|
779
|
//FactCategory
|
|
780
|
public static Feature factCategory2Feature (int factCategoryId) throws UnknownCdmTypeException{
|
|
781
|
switch (factCategoryId){
|
|
782
|
case 0: return null;
|
|
783
|
case 1: return Feature.DESCRIPTION();
|
|
784
|
case 4: return Feature.ECOLOGY();
|
|
785
|
case 5: return Feature.PHENOLOGY();
|
|
786
|
case 12: return Feature.COMMON_NAME();
|
|
787
|
case 13: return Feature.OCCURRENCE();
|
|
788
|
case 99: return Feature.CITATION();
|
|
789
|
default: {
|
|
790
|
throw new UnknownCdmTypeException("Unknown FactCategory (id=" + Integer.valueOf(factCategoryId).toString() + ")");
|
|
791
|
}
|
|
792
|
}
|
|
793
|
}
|
|
794
|
|
|
795
|
public static UUID getFeatureUuid(String key) {
|
|
796
|
if (key == null){
|
|
797
|
return null;
|
|
798
|
}else if (key.equalsIgnoreCase("14-Maps")){ return uuidFeatureMaps;
|
|
799
|
}else if (key.equalsIgnoreCase("301-Conservation Status")){ return uuidFeatureConservationStatus;
|
|
800
|
}else if (key.equalsIgnoreCase("302-Use")){ return uuidFeatureUse;
|
|
801
|
}else if (key.equalsIgnoreCase("303-Comments")){ return uuidFeatureComments;
|
|
802
|
|
|
803
|
}else if (key.equalsIgnoreCase("10-general distribution (Euro+Med)")){ return uuidFeatureDistrEM;
|
|
804
|
}else if (key.equalsIgnoreCase("11-general distribution (world)")){ return uuidFeatureDistrWorld;
|
|
805
|
}else if (key.equalsIgnoreCase("250-Editor_Brackets")){ return uuidFeatureEditorBrackets;
|
|
806
|
}else if (key.equalsIgnoreCase("251-Editor_Parenthesis")){ return uuidFeatureEditorParenthesis;
|
|
807
|
}else if (key.equalsIgnoreCase("252-Inedited")){ return uuidFeatureInedited;
|
|
808
|
}else if (key.equalsIgnoreCase("253-Comments on editing process")){ return uuidFeatureCommentsEditing;
|
|
809
|
|
|
810
|
//salvador
|
|
811
|
}else if (key.equalsIgnoreCase("302-Usos")){ return Feature.uuidUses;
|
|
812
|
}else if (key.equalsIgnoreCase("303-Distribución global")){ return uuidFeatureDistributionGlobal;
|
|
813
|
}else if (key.equalsIgnoreCase("306-Nombre(s) común(es)")){ return Feature.uuidCommonName;
|
|
814
|
}else if (key.equalsIgnoreCase("307-Muestras de herbario")){ return Feature.uuidSpecimen;
|
|
815
|
}else if (key.equalsIgnoreCase("309-Reporte para El Salvador")){ return uuidReporteParaElSalvador;
|
|
816
|
}else if (key.equalsIgnoreCase("310-Otras referencias")){ return uuidFeatureOtherReferences;
|
|
817
|
}else if (key.equalsIgnoreCase("311-Ilustración(es)")){ return uuidFeatureTaxonIllustrationReferences;
|
|
818
|
}else if (key.equalsIgnoreCase("312-Imágen")){ return Feature.uuidImage;
|
|
819
|
}else if (key.equalsIgnoreCase("350-Descripción*")){ return Feature.uuidDescription;
|
|
820
|
}else if (key.equalsIgnoreCase("1800-Notas de muestras*")){ return uuidFeatureSpecimenNotes;
|
|
821
|
}else if (key.equalsIgnoreCase("1900-Notas editoriales*")){ return uuidFeatureEditorialNotes;
|
|
822
|
}else if (key.equalsIgnoreCase("2000-Habitat en El Salvador*")){ return uuidFeatureHabitatSalvador;
|
|
823
|
|
|
824
|
|
|
825
|
|
|
826
|
|
|
827
|
|
|
828
|
|
|
829
|
|
|
830
|
}else{
|
|
831
|
return null;
|
|
832
|
}
|
|
833
|
}
|
|
834
|
|
|
835
|
|
|
836
|
static Rank collSpeciesRank;
|
|
837
|
/**
|
|
838
|
* @param i
|
|
839
|
* @return
|
|
840
|
*/
|
|
841
|
private static Rank rankId2NewRank(Integer rankId, boolean switchRank) {
|
|
842
|
Rank result = null;
|
|
843
|
if (rankId == null){
|
|
844
|
return null;
|
|
845
|
}else if (rankId == 57){
|
|
846
|
|
|
847
|
if (collSpeciesRank == null){
|
|
848
|
collSpeciesRank = Rank.NewInstance(RankClass.SpeciesGroup, "Collective species", "Coll. species", "coll.");
|
|
849
|
collSpeciesRank.setUuid(uuidRankCollSpecies);
|
|
850
|
OrderedTermVocabulary<Rank> voc = (OrderedTermVocabulary<Rank>)Rank.SPECIES().getVocabulary();
|
|
851
|
voc.addTermBelow(collSpeciesRank, Rank.SPECIESGROUP());
|
|
852
|
}
|
|
853
|
result = collSpeciesRank;
|
|
854
|
}
|
|
855
|
return result;
|
|
856
|
}
|
|
857
|
|
|
858
|
|
|
859
|
public static Rank rankId2Rank (ResultSet rs, boolean useUnknown, boolean switchSpeciesGroup) throws UnknownCdmTypeException{
|
|
860
|
Rank result;
|
|
861
|
try {
|
|
862
|
int rankId = rs.getInt("rankFk");
|
|
863
|
|
|
864
|
String abbrev = rs.getString("rankAbbrev");
|
|
865
|
String rankName = rs.getString("rank");
|
|
866
|
if (logger.isDebugEnabled()){logger.debug(rankId);}
|
|
867
|
if (logger.isDebugEnabled()){logger.debug(abbrev);}
|
|
868
|
if (logger.isDebugEnabled()){logger.debug(rankName);}
|
|
869
|
|
|
870
|
if (switchSpeciesGroup){
|
|
871
|
if (rankId == 59){
|
|
872
|
rankId = 57;
|
|
873
|
}else if (rankId == 57){
|
|
874
|
rankId = 59;
|
|
875
|
}
|
|
876
|
}
|
|
877
|
try {
|
|
878
|
result = Rank.getRankByNameOrIdInVoc(abbrev);
|
|
879
|
} catch (UnknownCdmTypeException e) {
|
|
880
|
try {
|
|
881
|
result = Rank.getRankByNameOrIdInVoc(rankName);
|
|
882
|
} catch (UnknownCdmTypeException e1) {
|
|
883
|
switch (rankId){
|
|
884
|
case 0: return null;
|
|
885
|
case 1: return Rank.KINGDOM();
|
|
886
|
case 3: return Rank.SUBKINGDOM();
|
|
887
|
case 5: return Rank.PHYLUM();
|
|
888
|
case 7: return Rank.SUBPHYLUM();
|
|
889
|
case 8: return Rank.DIVISION();
|
|
890
|
case 9: return Rank.SUBDIVISION();
|
|
891
|
case 10: return Rank.CLASS();
|
|
892
|
case 13: return Rank.SUBCLASS();
|
|
893
|
case 16: return Rank.SUPERORDER();
|
|
894
|
case 18: return Rank.ORDER();
|
|
895
|
case 19: return Rank.SUBORDER();
|
|
896
|
case 20: return Rank.FAMILY();
|
|
897
|
case 25: return Rank.SUBFAMILY();
|
|
898
|
case 30: return Rank.TRIBE();
|
|
899
|
case 35: return Rank.SUBTRIBE();
|
|
900
|
case 40: return Rank.GENUS();
|
|
901
|
case 42: return Rank.SUBGENUS();
|
|
902
|
case 45: return Rank.SECTION_BOTANY();
|
|
903
|
case 47: return Rank.SUBSECTION_BOTANY();
|
|
904
|
case 50: return Rank.SERIES();
|
|
905
|
case 52: return Rank.SUBSERIES();
|
|
906
|
case 58: return Rank.SPECIESAGGREGATE();
|
|
907
|
case 59: return Rank.SPECIESGROUP();
|
|
908
|
case 60: return Rank.SPECIES();
|
|
909
|
case 61: return Rank.GREX();
|
|
910
|
case 65: return Rank.SUBSPECIES();
|
|
911
|
case 66: {System.out.println("Rank 66 not yet implemented"); throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());}
|
|
912
|
case 67: {System.out.println("Rank 67 not yet implemented"); throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());}
|
|
913
|
case 68: return Rank.CONVAR();
|
|
914
|
case 70: return Rank.VARIETY();
|
|
915
|
case 73: return Rank.SUBVARIETY();
|
|
916
|
case 80: return Rank.FORM();
|
|
917
|
case 82: return Rank.SUBFORM();
|
|
918
|
case 84: return Rank.SPECIALFORM();
|
|
919
|
case 98: return Rank.INFRAGENERICTAXON();
|
|
920
|
case 99: return Rank.INFRASPECIFICTAXON();
|
|
921
|
|
|
922
|
case 750: return Rank.SUPERCLASS();
|
|
923
|
case 780: return Rank.INFRACLASS();
|
|
924
|
case 820: return Rank.INFRAORDER();
|
|
925
|
|
|
926
|
case 830: return Rank.SUPERFAMILY();
|
|
927
|
|
|
928
|
default: {
|
|
929
|
Rank rank = rankId2NewRank(57, switchSpeciesGroup);
|
|
930
|
if (rank != null){
|
|
931
|
return rank;
|
|
932
|
}
|
|
933
|
if (useUnknown){
|
|
934
|
logger.error("Rank unknown: " + rankId + ". Created UNKNOWN_RANK");
|
|
935
|
return Rank.UNKNOWN_RANK();
|
|
936
|
}
|
|
937
|
throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());
|
|
938
|
}
|
|
939
|
}
|
|
940
|
}
|
|
941
|
}
|
|
942
|
return result;
|
|
943
|
} catch (SQLException e) {
|
|
944
|
e.printStackTrace();
|
|
945
|
logger.warn("Exception occurred. Created UNKNOWN_RANK instead");
|
|
946
|
return Rank.UNKNOWN_RANK();
|
|
947
|
}
|
|
948
|
}
|
|
949
|
|
|
950
|
|
|
951
|
public static Integer rank2RankId (Rank rank){
|
|
952
|
if (rank == null){
|
|
953
|
return null;
|
|
954
|
}
|
|
955
|
else if (rank.equals(Rank.KINGDOM())){ return 1;}
|
|
956
|
else if (rank.equals(Rank.SUBKINGDOM())){ return 3;}
|
|
957
|
else if (rank.equals(Rank.PHYLUM())){ return 5;}
|
|
958
|
else if (rank.equals(Rank.SUBPHYLUM())){ return 7;}
|
|
959
|
else if (rank.equals(Rank.DIVISION())){ return 8;}
|
|
960
|
else if (rank.equals(Rank.SUBDIVISION())){ return 9;}
|
|
961
|
|
|
962
|
else if (rank.equals(Rank.CLASS())){ return 10;}
|
|
963
|
else if (rank.equals(Rank.SUBCLASS())){ return 13;}
|
|
964
|
else if (rank.equals(Rank.SUPERORDER())){ return 16;}
|
|
965
|
else if (rank.equals(Rank.ORDER())){ return 18;}
|
|
966
|
else if (rank.equals(Rank.SUBORDER())){ return 19;}
|
|
967
|
else if (rank.equals(Rank.FAMILY())){ return 20;}
|
|
968
|
else if (rank.equals(Rank.SUBFAMILY())){ return 25;}
|
|
969
|
else if (rank.equals(Rank.TRIBE())){ return 30;}
|
|
970
|
else if (rank.equals(Rank.SUBTRIBE())){ return 35;}
|
|
971
|
else if (rank.equals(Rank.GENUS())){ return 40;}
|
|
972
|
else if (rank.equals(Rank.SUBGENUS())){ return 42;}
|
|
973
|
else if (rank.equals(Rank.SECTION_BOTANY())){ return 45;}
|
|
974
|
else if (rank.equals(Rank.SUBSECTION_BOTANY())){ return 47;}
|
|
975
|
else if (rank.equals(Rank.SERIES())){ return 50;}
|
|
976
|
else if (rank.equals(Rank.SUBSERIES())){ return 52;}
|
|
977
|
else if (rank.equals(Rank.SPECIESAGGREGATE())){ return 58;}
|
|
978
|
//TODO
|
|
979
|
// else if (rank.equals(Rank.XXX())){ return 59;}
|
|
980
|
else if (rank.equals(Rank.SPECIES())){ return 60;}
|
|
981
|
else if (rank.equals(Rank.SUBSPECIES())){ return 65;}
|
|
982
|
else if (rank.equals(Rank.CONVAR())){ return 68;}
|
|
983
|
else if (rank.equals(Rank.VARIETY())){ return 70;}
|
|
984
|
else if (rank.equals(Rank.SUBVARIETY())){ return 73;}
|
|
985
|
else if (rank.equals(Rank.FORM())){ return 80;}
|
|
986
|
else if (rank.equals(Rank.SUBFORM())){ return 82;}
|
|
987
|
else if (rank.equals(Rank.SPECIALFORM())){ return 84;}
|
|
988
|
else if (rank.equals(Rank.INFRAGENERICTAXON())){ return 98;}
|
|
989
|
else if (rank.equals(Rank.INFRASPECIFICTAXON())){ return 99;}
|
|
990
|
|
|
991
|
else if (rank.equals(Rank.SUPERCLASS())){ return 750;}
|
|
992
|
else if (rank.equals(Rank.INFRACLASS())){ return 780;}
|
|
993
|
else if (rank.equals(Rank.INFRAORDER())){ return 820;}
|
|
994
|
else if (rank.equals(Rank.SUPERFAMILY())){ return 830;}
|
|
995
|
|
|
996
|
else {
|
|
997
|
//TODO Exception
|
|
998
|
logger.warn("Rank not yet supported in Berlin Model: "+ rank.getLabel());
|
|
999
|
return null;
|
|
1000
|
}
|
|
1001
|
}
|
|
1002
|
|
|
1003
|
public static Integer textData2FactCategoryFk (Feature feature){
|
|
1004
|
if (feature == null){return null;}
|
|
1005
|
if (feature.equals(Feature.DESCRIPTION())){
|
|
1006
|
return 1;
|
|
1007
|
}else if (feature.equals(Feature.ECOLOGY())){
|
|
1008
|
return 4;
|
|
1009
|
}else if (feature.equals(Feature.PHENOLOGY())){
|
|
1010
|
return 5;
|
|
1011
|
}else if (feature.equals(Feature.COMMON_NAME())){
|
|
1012
|
return 12;
|
|
1013
|
}else if (feature.equals(Feature.OCCURRENCE())){
|
|
1014
|
return 13;
|
|
1015
|
}else if (feature.equals(Feature.CITATION())){
|
|
1016
|
return 99;
|
|
1017
|
}else{
|
|
1018
|
logger.debug("Unknown Feature.");
|
|
1019
|
return null;
|
|
1020
|
}
|
|
1021
|
}
|
|
1022
|
|
|
1023
|
|
|
1024
|
public static Integer taxonBase2statusFk (TaxonBase<?> taxonBase){
|
|
1025
|
if (taxonBase == null){return null;}
|
|
1026
|
if (taxonBase.isInstanceOf(Taxon.class)){
|
|
1027
|
return T_STATUS_ACCEPTED;
|
|
1028
|
}else if (taxonBase.isInstanceOf(Synonym.class)){
|
|
1029
|
return T_STATUS_SYNONYM;
|
|
1030
|
}else{
|
|
1031
|
logger.warn("Unknown ");
|
|
1032
|
return T_STATUS_UNRESOLVED;
|
|
1033
|
}
|
|
1034
|
//TODO
|
|
1035
|
// public static int T_STATUS_PARTIAL_SYN = 3;
|
|
1036
|
// public static int T_STATUS_PRO_PARTE_SYN = 4;
|
|
1037
|
// public static int T_STATUS_UNRESOLVED = 5;
|
|
1038
|
// public static int T_STATUS_ORPHANED = 6;
|
|
1039
|
}
|
|
1040
|
|
|
1041
|
public static Integer ref2refCategoryId (Reference ref){
|
|
1042
|
if (ref == null){
|
|
1043
|
return null;
|
|
1044
|
}
|
|
1045
|
else if (ref.getType().equals(ReferenceType.Article)){ return REF_ARTICLE;}
|
|
1046
|
else if (ref instanceof ISection){ return REF_PART_OF_OTHER_TITLE;}
|
|
1047
|
else if (ref.getType().equals(ReferenceType.Book)){ return REF_BOOK;}
|
|
1048
|
else if (ref.getType().equals(ReferenceType.Database)){ return REF_DATABASE;}
|
|
1049
|
// else if (ref instanceof SectionBas){ return REF_INFORMAL;}
|
|
1050
|
// else if (ref instanceof SectionBas){ return REF_NOT_APPLICABLE;}
|
|
1051
|
else if (ref.getType().equals(ReferenceType.WebPage)){ return REF_WEBSITE;}
|
|
1052
|
else if (ref.getType().equals(ReferenceType.CdDvd)){ return REF_CD;}
|
|
1053
|
else if (ref.getType().equals(ReferenceType.Journal)){ return REF_JOURNAL;}
|
|
1054
|
else if (ref.getType().equals(ReferenceType.Generic)){ return REF_UNKNOWN;}
|
|
1055
|
else if (ref.getType().equals(ReferenceType.PrintSeries)){
|
|
1056
|
logger.warn("Print Series is not a standard Berlin Model category");
|
|
1057
|
return REF_PRINT_SERIES;
|
|
1058
|
}
|
|
1059
|
else if (ref.getType().equals(ReferenceType.Proceedings)){
|
|
1060
|
logger.warn("Proceedings is not a standard Berlin Model category");
|
|
1061
|
return REF_CONFERENCE_PROCEEDINGS;
|
|
1062
|
}
|
|
1063
|
// else if (ref instanceof ){ return REF_JOURNAL_VOLUME;}
|
|
1064
|
else if (ref.getType().equals(ReferenceType.Patent)){ return REF_NOT_APPLICABLE;}
|
|
1065
|
else if (ref.getType().equals(ReferenceType.PersonalCommunication)){ return REF_INFORMAL;}
|
|
1066
|
else if (ref.getType().equals(ReferenceType.Report)){ return REF_NOT_APPLICABLE;}
|
|
1067
|
else if (ref.getType().equals(ReferenceType.Thesis)){ return REF_NOT_APPLICABLE;}
|
|
1068
|
else if (ref.getType().equals(ReferenceType.Report)){ return REF_NOT_APPLICABLE;}
|
|
1069
|
|
|
1070
|
else {
|
|
1071
|
//TODO Exception
|
|
1072
|
logger.warn("Reference type not yet supported in Berlin Model: "+ ref.getClass().getSimpleName());
|
|
1073
|
return null;
|
|
1074
|
}
|
|
1075
|
}
|
|
1076
|
|
|
1077
|
|
|
1078
|
public static Integer taxRelation2relPtQualifierFk (RelationshipBase<?,?,?> rel){
|
|
1079
|
if (rel == null){
|
|
1080
|
return null;
|
|
1081
|
}
|
|
1082
|
// else if (rel instanceof SynonymRelationship){
|
|
1083
|
// return ;
|
|
1084
|
// }else if (rel instanceof TaxonRelationship){
|
|
1085
|
RelationshipTermBase<?> type = rel.getType();
|
|
1086
|
if (type.equals(TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN())) {return TAX_REL_IS_INCLUDED_IN;
|
|
1087
|
}else if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {return TAX_REL_IS_MISAPPLIED_NAME_OF;
|
|
1088
|
}else if (type.equals(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR())) {return TAX_REL_IS_PRO_PARTE_MISAPPLIED_NAME_OF;
|
|
1089
|
}else if (type.equals(SynonymType.SYNONYM_OF())) {return TAX_REL_IS_SYNONYM_OF;
|
|
1090
|
}else if (type.equals(SynonymType.HOMOTYPIC_SYNONYM_OF())) {return TAX_REL_IS_HOMOTYPIC_SYNONYM_OF;
|
|
1091
|
}else if (type.equals(SynonymType.HETEROTYPIC_SYNONYM_OF())) {return TAX_REL_IS_HETEROTYPIC_SYNONYM_OF;
|
|
1092
|
}else if (type.equals(TaxonRelationshipType.CONGRUENT_TO())) {return 11;
|
|
1093
|
// public static int TAX_REL_IS_PROPARTE_SYN_OF = 4;
|
|
1094
|
// public static int TAX_REL_IS_PARTIAL_SYN_OF = 5;
|
|
1095
|
// public static int TAX_REL_IS_PROPARTE_HOMOTYPIC_SYNONYM_OF = 101;
|
|
1096
|
// public static int TAX_REL_IS_PROPARTE_HETEROTYPIC_SYNONYM_OF = 102;
|
|
1097
|
// public static int TAX_REL_IS_PARTIAL_HOMOTYPIC_SYNONYM_OF = 103;
|
|
1098
|
// public static int TAX_REL_IS_PARTIAL_HETEROTYPIC_SYNONYM_OF = 104;
|
|
1099
|
|
|
1100
|
}else {
|
|
1101
|
//TODO Exception
|
|
1102
|
logger.warn("Relationship type not yet supported by Berlin Model export: "+ rel.getType());
|
|
1103
|
return null;
|
|
1104
|
}
|
|
1105
|
}
|
|
1106
|
|
|
1107
|
public static Integer nomStatus2nomStatusFk (NomenclaturalStatusType status){
|
|
1108
|
if (status == null){
|
|
1109
|
return null;
|
|
1110
|
}
|
|
1111
|
if (status.equals(NomenclaturalStatusType.INVALID())) {return NAME_ST_NOM_INVAL;
|
|
1112
|
}else if (status.equals(NomenclaturalStatusType.ILLEGITIMATE())) {return NAME_ST_NOM_ILLEG;
|
|
1113
|
}else if (status.equals(NomenclaturalStatusType.NUDUM())) {return NAME_ST_NOM_NUD;
|
|
1114
|
}else if (status.equals(NomenclaturalStatusType.REJECTED())) {return NAME_ST_NOM_REJ;
|
|
1115
|
}else if (status.equals(NomenclaturalStatusType.REJECTED_PROP())) {return NAME_ST_NOM_REJ_PROP;
|
|
1116
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED())) {return NAME_ST_NOM_UTIQUE_REJ;
|
|
1117
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED_PROP())) {return NAME_ST_NOM_UTIQUE_REJ_PROP;
|
|
1118
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED())) {return NAME_ST_NOM_CONS;
|
|
1119
|
|
|
1120
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED_PROP())) {return NAME_ST_NOM_CONS_PROP;
|
|
1121
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED())) {return NAME_ST_ORTH_CONS;
|
|
1122
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP())) {return NAME_ST_ORTH_CONS_PROP;
|
|
1123
|
}else if (status.equals(NomenclaturalStatusType.SUPERFLUOUS())) {return NAME_ST_NOM_SUPERFL;
|
|
1124
|
}else if (status.equals(NomenclaturalStatusType.AMBIGUOUS())) {return NAME_ST_NOM_AMBIG;
|
|
1125
|
}else if (status.equals(NomenclaturalStatusType.PROVISIONAL())) {return NAME_ST_NOM_PROVIS;
|
|
1126
|
}else if (status.equals(NomenclaturalStatusType.DOUBTFUL())) {return NAME_ST_NOM_DUB;
|
|
1127
|
}else if (status.equals(NomenclaturalStatusType.NOVUM())) {return NAME_ST_NOM_NOV;
|
|
1128
|
|
|
1129
|
}else if (status.equals(NomenclaturalStatusType.CONFUSUM())) {return NAME_ST_NOM_CONFUS;
|
|
1130
|
}else if (status.equals(NomenclaturalStatusType.ALTERNATIVE())) {return NAME_ST_NOM_ALTERN;
|
|
1131
|
}else if (status.equals(NomenclaturalStatusType.COMBINATION_INVALID())) {return NAME_ST_COMB_INVAL;
|
|
1132
|
//TODO
|
|
1133
|
}else {
|
|
1134
|
//TODO Exception
|
|
1135
|
logger.warn("NomStatus type not yet supported by Berlin Model export: "+ status);
|
|
1136
|
return null;
|
|
1137
|
}
|
|
1138
|
}
|
|
1139
|
|
|
1140
|
|
|
1141
|
|
|
1142
|
public static Integer nameRel2RelNameQualifierFk (RelationshipBase<?,?,?> rel){
|
|
1143
|
if (rel == null){
|
|
1144
|
return null;
|
|
1145
|
}
|
|
1146
|
RelationshipTermBase<?> type = rel.getType();
|
|
1147
|
if (type.equals(NameRelationshipType.BASIONYM())) {return NAME_REL_IS_BASIONYM_FOR;
|
|
1148
|
}else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {return NAME_REL_IS_LATER_HOMONYM_OF;
|
|
1149
|
}else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {return NAME_REL_IS_REPLACED_SYNONYM_FOR;
|
|
1150
|
//TODO
|
|
1151
|
}else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {return NAME_REL_IS_VALIDATION_OF;
|
|
1152
|
}else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {return NAME_REL_IS_LATER_VALIDATION_OF;
|
|
1153
|
}else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {return NAME_REL_IS_CONSERVED_AGAINST;
|
|
1154
|
|
|
1155
|
|
|
1156
|
}else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {return NAME_REL_IS_TREATED_AS_LATER_HOMONYM_OF;
|
|
1157
|
}else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {return NAME_REL_IS_ORTHOGRAPHIC_VARIANT_OF;
|
|
1158
|
}else {
|
|
1159
|
//TODO Exception
|
|
1160
|
logger.warn("Relationship type not yet supported by Berlin Model export: "+ rel.getType());
|
|
1161
|
return null;
|
|
1162
|
}
|
|
1163
|
|
|
1164
|
//NameRelationShip
|
|
1165
|
|
|
1166
|
// }else if (type.equals(NameRelationshipType.())) {return NAME_REL_IS_REJECTED_IN_FAVOUR_OF;
|
|
1167
|
|
|
1168
|
// public static int NAME_REL_IS_FIRST_PARENT_OF = 9;
|
|
1169
|
// public static int NAME_REL_IS_SECOND_PARENT_OF = 10;
|
|
1170
|
// public static int NAME_REL_IS_FEMALE_PARENT_OF = 11;
|
|
1171
|
// public static int NAME_REL_IS_MALE_PARENT_OF = 12;
|
|
1172
|
//
|
|
1173
|
// public static int NAME_REL_IS_REJECTED_IN_FAVOUR_OF = 14;
|
|
1174
|
// }else if (type.equals(NameRelationshipType.)) {return NAME_REL_IS_REJECTED_TYPE_OF;
|
|
1175
|
//
|
|
1176
|
// public static int NAME_REL_HAS_SAME_TYPE_AS = 18;
|
|
1177
|
// public static int NAME_REL_IS_LECTOTYPE_OF = 61;
|
|
1178
|
// public static int NAME_REL_TYPE_NOT_DESIGNATED = 62;
|
|
1179
|
|
|
1180
|
// }else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {return NAME_REL_IS_TYPE_OF;
|
|
1181
|
|
|
1182
|
|
|
1183
|
}
|
|
1184
|
|
|
1185
|
public static UUID getWebMarkerUuid (int markerCategoryId){
|
|
1186
|
if (markerCategoryId == 1){
|
|
1187
|
return UUID.fromString("d8554418-d1ae-471d-a1bd-a0cbc7ab860c"); //any as not to find in cichorieae
|
|
1188
|
}else if (markerCategoryId == 2){
|
|
1189
|
return UUID.fromString("7f189c48-8632-4870-9ec8-e4d2489f324e");
|
|
1190
|
}else if (markerCategoryId == 3){
|
|
1191
|
return UUID.fromString("9a115e6b-8210-4dd3-825a-6fed11016c63");
|
|
1192
|
}else if (markerCategoryId == 4){
|
|
1193
|
return UUID.fromString("1d287011-2054-41c5-a919-17ac1d0a9270");
|
|
1194
|
}else if (markerCategoryId == 9){
|
|
1195
|
return UUID.fromString("cc5eca5c-1ae5-4feb-9a95-507fc167b0c9");
|
|
1196
|
//Salvador
|
|
1197
|
}else if (markerCategoryId == 5){
|
|
1198
|
return UUID.fromString("7d8875b3-107c-4189-97e5-cadb470e543a");
|
|
1199
|
}else if (markerCategoryId == 20){
|
|
1200
|
return UUID.fromString("3574e2b0-6431-4d71-b456-bc967c80f622");
|
|
1201
|
}else if (markerCategoryId == 30){
|
|
1202
|
return UUID.fromString("9924b27e-0dbe-4d95-ae9b-096fbbc3edcb");
|
|
1203
|
}else if (markerCategoryId == 40){
|
|
1204
|
return UUID.fromString("69241b97-f4d2-4f60-9aed-1c4ccb5bced5");
|
|
1205
|
}else if (markerCategoryId == 50){
|
|
1206
|
return UUID.fromString("f3b62ce3-0212-4542-a74c-0c68d08859b1");
|
|
1207
|
}else if (markerCategoryId == 55){
|
|
1208
|
return UUID.fromString("bec822f2-8242-425f-ad46-f11f0b82f69b");
|
|
1209
|
}else if (markerCategoryId == 60){
|
|
1210
|
return UUID.fromString("722fca60-0416-4bf0-aa4b-a07400f9710d");
|
|
1211
|
}else if (markerCategoryId == 70){
|
|
1212
|
return UUID.fromString("ed57857b-1001-4b09-b48e-d88ab146bb2b");
|
|
1213
|
}else if (markerCategoryId == 80){
|
|
1214
|
return UUID.fromString("637e8b77-1202-462b-9d77-1023f3c192d9");
|
|
1215
|
}else if (markerCategoryId == 90){
|
|
1216
|
return UUID.fromString("c769c231-6e76-46df-88f7-2c459342a3c2");
|
|
1217
|
}else if (markerCategoryId == 93){
|
|
1218
|
return UUID.fromString("075ee97e-246f-4f3d-aa96-16930df6268c");
|
|
1219
|
}else if (markerCategoryId == 100){
|
|
1220
|
return UUID.fromString("e17065bf-3e44-417a-b05c-f82929f680c3");
|
|
1221
|
}else if (markerCategoryId == 110){
|
|
1222
|
return UUID.fromString("e2b8de07-770e-4fda-b445-c4735f4e95c8");
|
|
1223
|
}else if (markerCategoryId == 900){
|
|
1224
|
return UUID.fromString("d029c3c9-944a-4bb9-bba6-12c95da94a04");
|
|
1225
|
}else if (markerCategoryId == 920){
|
|
1226
|
return UUID.fromString("98af97b1-e5e3-4ee4-902e-15032316bfc3");
|
|
1227
|
}else if (markerCategoryId == 930){
|
|
1228
|
return UUID.fromString("4b6c3130-4e50-4f45-8461-d2698cf5f80b");
|
|
1229
|
}else if (markerCategoryId == 950){
|
|
1230
|
return UUID.fromString("1e53f58c-6528-42c6-99ae-0f75a3c3c264");
|
|
1231
|
}else if (markerCategoryId == 960){
|
|
1232
|
return UUID.fromString("1903d460-94cc-4fc4-b2a8-a3fb0cfd69a0");
|
|
1233
|
}else{
|
|
1234
|
logger.warn("Unknown webMarker category: " + markerCategoryId);
|
|
1235
|
return null;
|
|
1236
|
}
|
|
1237
|
|
|
1238
|
}
|
|
1239
|
|
|
1240
|
}
|