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/**
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* Copyright (C) 2014 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.ext.occurrence.gbif;
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import java.io.IOException;
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import java.net.URI;
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import java.net.URISyntaxException;
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import java.util.Collection;
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import java.util.GregorianCalendar;
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import java.util.List;
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import org.apache.http.NameValuePair;
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import org.apache.http.client.ClientProtocolException;
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import org.apache.http.message.BasicNameValuePair;
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import org.junit.Assert;
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import org.junit.Ignore;
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import org.junit.Test;
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import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
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/**
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* @author pplitzner
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* @since 20.05.2014
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*
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*/
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public class GbifQueryServiceWrapperTest {
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private static final String LOCALITY_STRING = "Saddington Reservoir, Saddington Reservoir";
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private final String dummyJsonRecords = "{" +
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"\"results\":" +
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"[" +
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"{" +
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"\"key\": 252408386," +
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"\"datasetKey\": \"26a49731-9457-45b2-9105-1b96063deb26\"," +
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"\"publishingOrgKey\": \"07f617d0-c688-11d8-bf62-b8a03c50a862\"," +
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"\"publishingCountry\": \"GB\"," +
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"\"protocol\": \"BIOCASE\"," +
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"\"lastCrawled\": \"2013-09-07T07:08:17.000+0000\"," +
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"\"identifiers\": [ ],"+
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"\"media\": [ ],"+
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"\"facts\": [ ],"+
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"\"relations\": [ ],"+
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"\"basisOfRecord\": \"OBSERVATION\","+
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"\"decimalLongitude\": -1.0193,"+
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"\"decimalLatitude\": 52.51021,"+
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"\"continent\": \"EUROPE\","+
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"\"year\": 2006,"+
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"\"month\": 6,"+
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"\"day\": 30,"+
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"\"eventDate\": \"2006-06-29T22:00:00.000+0000\","+
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"\"issues\": [ ],"+
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"\"lastInterpreted\": \"2014-04-01T23:31:15.462+0000\","+
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"\"geodeticDatum\": \"WGS84\","+
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"\"countryCode\": \"GB\","+
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"\"country\": \"United Kingdom\","+
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"\"gbifID\": \"252408386\","+
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"\"institutionCode\": \"Leicestershire and Rutland Environmental Records Centre\","+
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"\"catalogNumber\": \"70875196\","+
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"\"recordedBy\": \"DA Lott\","+
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"\"locality\": \""+LOCALITY_STRING+"\","+
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"\"collectionCode\": \"7472\","+
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"\"identifiedBy\": \"DA Lott\"" +
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"}" +
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"]" +
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"}";
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private final String dummyJsonDataset = "[" +
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"{"+
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"\"key\": 29596,"+
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"\"type\": \"BIOCASE\","+
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"\"url\": \"http://www.flora-mv.de/biocase/pywrapper.cgi?dsa=hoeherePflanzen\","+
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"\"createdBy\": \"crawler.gbif.org\","+
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"\"modifiedBy\": \"crawler.gbif.org\","+
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"\"created\": \"2014-01-13T10:32:05.170+0000\","+
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"\"modified\": \"2014-01-13T10:32:05.170+0000\","+
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"\"machineTags\": ["+
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" {"+
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" \"key\": 59486,"+
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" \"namespace\": \"metasync.gbif.org\","+
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" \"name\": \"conceptualSchema\","+
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" \"value\": \"http://www.tdwg.org/schemas/abcd/2.06\","+
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" \"createdBy\": \"crawler.gbif.org\","+
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" \"created\": \"2014-01-13T10:32:05.172+0000\""+
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" }"+
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"]"+
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"}"+
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"]";
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@Test
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public void testJsonToCdmObject() throws URISyntaxException{
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Collection<GbifResponse> records = GbifJsonOccurrenceParser.parseJsonRecords(dummyJsonRecords);
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Assert.assertEquals("number of records found is incorrect", 1, records.size());
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GbifResponse gbifResponse = records.iterator().next();
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Assert.assertEquals("Locality is incorrect", LOCALITY_STRING, gbifResponse.getDerivedUnitFacade().getLocalityText());
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Assert.assertEquals("protocol is wrong", GbifDataSetProtocol.BIOCASE, gbifResponse.getDataSetProtocol());
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Assert.assertEquals("protocol is wrong", new URI("http://api.gbif.org/v1/dataset/26a49731-9457-45b2-9105-1b96063deb26/endpoint"), gbifResponse.getDataSetUri());
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}
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@Test
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public void testJsonOriginalDataSetUriParsing(){
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DataSetResponse response = GbifJsonOccurrenceParser.parseOriginalDataSetUri(dummyJsonDataset);
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Assert.assertEquals("Response protocol is incorrect!", GbifDataSetProtocol.BIOCASE, response.getProtocol());
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Assert.assertEquals("Response endpoint is incorrect!", URI.create("http://www.flora-mv.de/biocase/pywrapper.cgi?dsa=hoeherePflanzen"), response.getEndpoint());
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}
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@Test
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public void testQueryParameterConversion(){
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OccurenceQuery query = new OccurenceQuery("Campanula persicifolia", "T. Henning", "1234", "ACC-2", "BGBM", "DE", "pollen herbarium", new GregorianCalendar(2014, 05, 27), new GregorianCalendar(2014,05,28), false);
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List<NameValuePair> queryParams = new GbifQueryGenerator().generateQueryParams(query);
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NameValuePair pair = new BasicNameValuePair("scientificName", "Campanula persicifolia");
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Assert.assertTrue("query parameter is missing", queryParams.contains(pair));
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//FIXME this will currently always fail because eventDate is still not supported by GBIF
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//"basisOfRecord" and "limit" is always set
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// + 8 from query (collectorsNumber will be represented in the two parameters "recordNumber" and "fieldNumber";
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// both dates are represented in one parameter "eventDate";
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// locality can still not be queried on GBIF web service)
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// assertEquals("Number of generated URI parameters is incorrect", 10, queryParams.size());
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}
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@Test
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@Ignore
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public void testGbifWebService() {
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OccurenceQuery query = new OccurenceQuery("Campanula persicifolia", "E. J. Palmer", null, null, null, null, null, null, null, false);
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GbifQueryServiceWrapper service = new GbifQueryServiceWrapper();
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try {
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Collection<GbifResponse> gbifResponse = service.query(query);
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Assert.assertEquals("Usually this query retrieves at least two units. " +
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"Test failure may also be due to GBIF!" +
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"Check http://api.gbif.org/v1/occurrence/search?basisOfRecord=PRESERVED_SPECIMEN&limit=100&recordedBy=E.+J.+Palmer&scientificName=Campanula+persicifolia", 2, gbifResponse.size());
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} catch (ClientProtocolException e) {
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Assert.fail(e.getMessage());
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} catch (IOException e) {
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Assert.fail(e.getMessage());
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} catch (URISyntaxException e) {
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Assert.fail(e.getMessage());
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}
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}
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@Test
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public void testGbifWebServiceNoParameters() {
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OccurenceQuery query = new OccurenceQuery(null, null, null, null, null, null, null, null, null, false);
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GbifQueryServiceWrapper service = new GbifQueryServiceWrapper();
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try {
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service.query(query);
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} catch (ClientProtocolException e) {
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Assert.fail(e.getMessage());
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} catch (IOException e) {
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Assert.fail(e.getMessage());
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} catch (URISyntaxException e) {
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Assert.fail(e.getMessage());
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}
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}
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}
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