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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.persistence.dao.hibernate.term;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.Enumeration;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Locale;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.hibernate.Criteria;
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import org.hibernate.Query;
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.criterion.Disjunction;
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import org.hibernate.criterion.Order;
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import org.hibernate.criterion.Projections;
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import org.hibernate.criterion.Restrictions;
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import org.hibernate.envers.query.AuditEntity;
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import org.hibernate.envers.query.AuditQuery;
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import org.springframework.stereotype.Repository;
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import eu.etaxonomy.cdm.common.URI;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.RightsType;
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import eu.etaxonomy.cdm.model.metadata.TermSearchField;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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import eu.etaxonomy.cdm.model.term.DefinedTermBase;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase;
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import eu.etaxonomy.cdm.persistence.dao.term.IDefinedTermDao;
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import eu.etaxonomy.cdm.persistence.dto.FeatureDto;
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import eu.etaxonomy.cdm.persistence.dto.TermDto;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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/**
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* @author a.kohlbecker
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* @since 29.05.2008
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*/
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@Repository
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public class DefinedTermDaoImpl
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extends IdentifiableDaoBase<DefinedTermBase>
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implements IDefinedTermDao{
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private static final Logger logger = Logger.getLogger(DefinedTermDaoImpl.class);
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@SuppressWarnings("unchecked")
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public DefinedTermDaoImpl() {
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super(DefinedTermBase.class);
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indexedClasses = new Class[25];
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indexedClasses[0] = Rank.class;
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indexedClasses[1] = AnnotationType.class;
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indexedClasses[2] = ExtensionType.class;
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indexedClasses[3] = Language.class;
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indexedClasses[4] = MarkerType.class;
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indexedClasses[5] = MeasurementUnit.class;
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indexedClasses[6] = DefinedTerm.class;
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indexedClasses[7] = PresenceAbsenceTerm.class;
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indexedClasses[8] = State.class;
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indexedClasses[9] = StatisticalMeasure.class;
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indexedClasses[10] = TextFormat.class;
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indexedClasses[11] = DerivationEventType.class;
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indexedClasses[12] = NamedArea.class;
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indexedClasses[13] = NamedAreaLevel.class;
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indexedClasses[14] = NamedAreaType.class;
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indexedClasses[15] = ReferenceSystem.class;
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indexedClasses[16] = Country.class;
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indexedClasses[17] = RightsType.class;
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indexedClasses[18] = HybridRelationshipType.class;
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indexedClasses[19] = NameRelationshipType.class;
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indexedClasses[20] = NameTypeDesignationStatus.class;
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indexedClasses[21] = NomenclaturalStatusType.class;
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indexedClasses[22] = SpecimenTypeDesignationStatus.class;
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indexedClasses[23] = SynonymType.class;
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indexedClasses[24] = TaxonRelationshipType.class;
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}
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/**
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* Searches by Label
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*/
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@Override
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public List<DefinedTermBase> findByTitle(String queryString) {
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return findByTitle(queryString, null);
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}
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/**
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* Searches by Label
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*/
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@Override
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public List<DefinedTermBase> findByTitle(String queryString, CdmBase sessionObject) {
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checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, CdmBase sessionObject)");
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Session session = getSession();
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if ( sessionObject != null ) {//attache the object to the session, TODO needed?
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session.update(sessionObject);
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}
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Query query = session.createQuery("select term from DefinedTermBase term join fetch term.representations representation where representation.label = :label");
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query.setParameter("label", queryString);
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@SuppressWarnings({ "unchecked", "rawtypes" })
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List<DefinedTermBase> result = deduplicateResult(query.list());
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return result;
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}
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@Override
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public List<DefinedTermBase> findByTitle(String queryString, MatchMode matchMode, int page, int pagesize, List<Criterion> criteria) {
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//FIXME is query parametrised?
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checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, ITitledDao.MATCH_MODE matchMode, int page, int pagesize, List<Criterion> criteria)");
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Criteria crit = getSession().createCriteria(type);
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crit.add(Restrictions.ilike("titleCache", matchMode.queryStringFrom(queryString)));
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crit.setMaxResults(pagesize);
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int firstItem = (page - 1) * pagesize + 1;
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crit.setFirstResult(firstItem);
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@SuppressWarnings("unchecked")
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List<DefinedTermBase> results = deduplicateResult(crit.list());
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return results;
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}
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@Override
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public Country getCountryByIso(String iso3166) {
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// If iso639 = "" query returns non-unique result. We prevent this here:
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if (StringUtils.isBlank(iso3166) || iso3166.length()<2 || iso3166.length()>3) { return null; }
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Query query = getSession().createQuery("from Country where iso3166_A2 = :isoCode OR idInVocabulary = :isoCode");
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query.setParameter("isoCode", iso3166);
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return (Country) query.uniqueResult();
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} else {
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AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Country.class,auditEvent.getRevisionNumber());
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query.add(AuditEntity.property("iso3166_A2").eq(iso3166));
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query.add(AuditEntity.property("idInVocabulary").eq(iso3166));
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return (Country) query.getSingleResult();
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}
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz ) {
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return getDefinedTermByRepresentationText(text,clazz,null,null);
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = deduplicateResult(criteria.list());
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return result;
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}
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@Override
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public long countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz) {
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checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("vocabulary", "voc")
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.add(Restrictions.like("voc.uuid", vocUuid))
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.add(Restrictions.like("idInVocabulary", label, org.hibernate.criterion.MatchMode.EXACT));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = deduplicateResult(criteria.list());
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return result;
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationAbbrev(String text, Class<T> clazz, Integer pageSize,Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationAbbrev(String abbrev, Class<T> clazz, Integer pageSize,Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = deduplicateResult(criteria.list());
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return result;
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}
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@Override
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public long countDefinedTermByRepresentationAbbrev(String text, Class<? extends DefinedTermBase> clazz) {
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checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationAbbrev(String abbrev, Class<? extends DefinedTermBase> clazz)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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}
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@Override
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public Language getLanguageByIso(String iso639) {
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if (iso639.length() < 2 || iso639.length() > 3) {
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logger.warn("Invalid length " + iso639.length() + " of ISO code. Length must be 2 or 3.");
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return null;
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}
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boolean isIso639_1 = iso639.length() == 2;
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String queryStr;
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if (isIso639_1){
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queryStr = "FROM Language WHERE iso639_1 = :isoCode";
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}else{
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queryStr = "FROM Language WHERE idInVocabulary = :isoCode AND vocabulary.uuid = :vocUuid";
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}
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Query query = getSession().createQuery(queryStr);
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query.setParameter("isoCode", iso639);
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if (! isIso639_1){
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query.setParameter("vocUuid", Language.uuidLanguageVocabulary);
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}
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return (Language) query.uniqueResult();
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} else {
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AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Language.class,auditEvent.getRevisionNumber());
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if (isIso639_1){
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query.add(AuditEntity.property("iso639_1").eq(iso639));
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}else{
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query.add(AuditEntity.property("iso639_2").eq(iso639));
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query.add(AuditEntity.property("vocabulary.uuid").eq(Language.uuidLanguageVocabulary));
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}
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return (Language)query.getSingleResult();
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}
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}
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/**
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* FIXME this will result in a query per language - could you, given that iso codes
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* are unique, use from Language where iso639_1 in (:isoCode) or iso639_2 in (:isoCode)
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*/
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@Override
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public List<Language> getLanguagesByIso(List<String> iso639List) {
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List<Language> languages = new ArrayList<>(iso639List.size());
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for (String iso639 : iso639List) {
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languages.add(getLanguageByIso(iso639));
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}
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return languages;
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}
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@Override
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public List<Language> getLanguagesByLocale(Enumeration<Locale> locales) {
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List<Language> languages = new ArrayList<>();
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while(locales.hasMoreElements()) {
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Locale locale = locales.nextElement();
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languages.add(getLanguageByIso(locale.getLanguage()));
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}
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return languages;
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}
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@Override
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public long count(NamedAreaLevel level, NamedAreaType type) {
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Criteria criteria = getCriteria(NamedArea.class);
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if(level != null) {
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criteria.add(Restrictions.eq("level",level));
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}
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if(type != null) {
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criteria.add(Restrictions.eq("type", type));
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}
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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} else {
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AuditQuery query = makeAuditQuery(NamedArea.class, auditEvent);
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if(level != null) {
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query.add(AuditEntity.relatedId("level").eq(level.getId()));
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}
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if(type != null) {
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330
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query.add(AuditEntity.relatedId("type").eq(type.getId()));
|
|
331
|
}
|
|
332
|
query.addProjection(AuditEntity.id().count());
|
|
333
|
return (Long)query.getSingleResult();
|
|
334
|
}
|
|
335
|
}
|
|
336
|
|
|
337
|
@Override
|
|
338
|
public long countMedia(DefinedTermBase definedTerm) {
|
|
339
|
checkNotInPriorView("DefinedTermDaoImpl.countMedia(DefinedTermBase definedTerm)");
|
|
340
|
Query query = getSession().createQuery("select count(media) from DefinedTermBase definedTerm join definedTerm.media media where definedTerm = :definedTerm");
|
|
341
|
query.setParameter("definedTerm", definedTerm);
|
|
342
|
|
|
343
|
return (Long)query.uniqueResult();
|
|
344
|
}
|
|
345
|
|
|
346
|
@Override
|
|
347
|
public List<Media> getMedia(DefinedTermBase definedTerm, Integer pageSize, Integer pageNumber) {
|
|
348
|
checkNotInPriorView("DefinedTermDaoImpl.getMedia(DefinedTermBase definedTerm, Integer pageSize, Integer pageNumber)");
|
|
349
|
Query query = getSession().createQuery(
|
|
350
|
"SELECT media "
|
|
351
|
+ " FROM DefinedTermBase definedTerm "
|
|
352
|
+ " JOIN definedTerm.media media "
|
|
353
|
+ " WHERE definedTerm = :definedTerm");
|
|
354
|
query.setParameter("definedTerm", definedTerm);
|
|
355
|
|
|
356
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
357
|
|
|
358
|
@SuppressWarnings("unchecked")
|
|
359
|
List<Media> result = query.list();
|
|
360
|
return result;
|
|
361
|
}
|
|
362
|
|
|
363
|
@Override
|
|
364
|
public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber) {
|
|
365
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
366
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
367
|
Criteria criteria = getCriteria(NamedArea.class);
|
|
368
|
|
|
369
|
if(level != null) {
|
|
370
|
criteria.add(Restrictions.eq("level",level));
|
|
371
|
}
|
|
372
|
|
|
373
|
if(type != null) {
|
|
374
|
criteria.add(Restrictions.eq("type", type));
|
|
375
|
}
|
|
376
|
|
|
377
|
addPageSizeAndNumber(criteria, pageSize, pageNumber);
|
|
378
|
|
|
379
|
@SuppressWarnings("unchecked")
|
|
380
|
List<NamedArea> result = deduplicateResult(criteria.list());
|
|
381
|
return result;
|
|
382
|
} else {
|
|
383
|
AuditQuery query = makeAuditQuery(NamedArea.class, auditEvent);
|
|
384
|
|
|
385
|
if(level != null) {
|
|
386
|
query.add(AuditEntity.relatedId("level").eq(level.getId()));
|
|
387
|
}
|
|
388
|
|
|
389
|
if(type != null) {
|
|
390
|
query.add(AuditEntity.relatedId("type").eq(type.getId()));
|
|
391
|
}
|
|
392
|
|
|
393
|
@SuppressWarnings("unchecked")
|
|
394
|
List<NamedArea> result = deduplicateResult(query.getResultList());
|
|
395
|
return result;
|
|
396
|
}
|
|
397
|
}
|
|
398
|
|
|
399
|
@Override
|
|
400
|
public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber,
|
|
401
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
402
|
|
|
403
|
List<NamedArea> result;
|
|
404
|
|
|
405
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
406
|
if (auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
407
|
Criteria criteria = getCriteria(NamedArea.class);
|
|
408
|
|
|
409
|
if (level != null) {
|
|
410
|
criteria.add(Restrictions.eq("level", level));
|
|
411
|
}
|
|
412
|
if (type != null) {
|
|
413
|
criteria.add(Restrictions.eq("type", type));
|
|
414
|
}
|
|
415
|
addOrder(criteria,orderHints);
|
|
416
|
addPageSizeAndNumber(criteria, pageSize, pageNumber);
|
|
417
|
|
|
418
|
result = deduplicateResult(criteria.list());
|
|
419
|
|
|
420
|
} else {
|
|
421
|
AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(NamedArea.class,
|
|
422
|
auditEvent.getRevisionNumber());
|
|
423
|
if (level != null) {
|
|
424
|
query.add(AuditEntity.relatedId("level").eq(level.getId()));
|
|
425
|
}
|
|
426
|
if (type != null) {
|
|
427
|
query.add(AuditEntity.relatedId("type").eq(type.getId()));
|
|
428
|
}
|
|
429
|
result = deduplicateResult(query.getResultList());
|
|
430
|
}
|
|
431
|
|
|
432
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
|
433
|
|
|
434
|
return result;
|
|
435
|
}
|
|
436
|
|
|
437
|
|
|
438
|
@Override
|
|
439
|
public <T extends DefinedTermBase> long countGeneralizationOf(T kindOf) {
|
|
440
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
441
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
442
|
Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.kindOf = :kindOf");
|
|
443
|
query.setParameter("kindOf", kindOf);
|
|
444
|
return (Long)query.uniqueResult();
|
|
445
|
} else {
|
|
446
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class,auditEvent);
|
|
447
|
query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
|
|
448
|
query.addProjection(AuditEntity.id().count());
|
|
449
|
return (Long)query.getSingleResult();
|
|
450
|
}
|
|
451
|
}
|
|
452
|
|
|
453
|
@Override
|
|
454
|
public <T extends DefinedTermBase> long countIncludes(Collection<T> partOf) {
|
|
455
|
if (partOf == null || partOf.isEmpty()){
|
|
456
|
return 0;
|
|
457
|
}
|
|
458
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
459
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
460
|
Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.partOf in (:partOf)");
|
|
461
|
query.setParameterList("partOf", partOf);
|
|
462
|
return (Long)query.uniqueResult();
|
|
463
|
} else {
|
|
464
|
long count = 0;
|
|
465
|
for(T t : partOf) {
|
|
466
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
|
467
|
query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
|
|
468
|
query.addProjection(AuditEntity.id().count());
|
|
469
|
count += (Long)query.getSingleResult();
|
|
470
|
}
|
|
471
|
return count;
|
|
472
|
}
|
|
473
|
}
|
|
474
|
|
|
475
|
@Override
|
|
476
|
public <T extends DefinedTermBase> List<T> getGeneralizationOf(T kindOf, Integer pageSize, Integer pageNumber) {
|
|
477
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
478
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
479
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.kindOf = :kindOf");
|
|
480
|
query.setParameter("kindOf", kindOf);
|
|
481
|
|
|
482
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
483
|
|
|
484
|
@SuppressWarnings("unchecked")
|
|
485
|
List<T> result = deduplicateResult(query.list());
|
|
486
|
return result;
|
|
487
|
} else {
|
|
488
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
|
489
|
query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
|
|
490
|
|
|
491
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
492
|
|
|
493
|
@SuppressWarnings("unchecked")
|
|
494
|
List<T> result = deduplicateResult(query.getResultList());
|
|
495
|
return result;
|
|
496
|
}
|
|
497
|
}
|
|
498
|
|
|
499
|
@Override
|
|
500
|
public <T extends DefinedTermBase> List<T> getIncludes(Collection<T> partOf, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
501
|
if (partOf == null || partOf.isEmpty()){
|
|
502
|
return new ArrayList<>();
|
|
503
|
}
|
|
504
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
505
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
506
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.partOf in (:partOf)");
|
|
507
|
query.setParameterList("partOf", partOf);
|
|
508
|
|
|
509
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
510
|
|
|
511
|
@SuppressWarnings("unchecked")
|
|
512
|
List<T> results = deduplicateResult(query.list());
|
|
513
|
defaultBeanInitializer.initializeAll(results, propertyPaths);
|
|
514
|
return results;
|
|
515
|
} else {
|
|
516
|
List<T> result = new ArrayList<>();
|
|
517
|
for(T t : partOf) {
|
|
518
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
|
519
|
query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
|
|
520
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
521
|
|
|
522
|
result.addAll(deduplicateResult(query.getResultList()));
|
|
523
|
}
|
|
524
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
|
525
|
return result;
|
|
526
|
}
|
|
527
|
}
|
|
528
|
|
|
529
|
@Override
|
|
530
|
public <T extends DefinedTermBase> long countPartOf(Set<T> definedTerms) {
|
|
531
|
checkNotInPriorView("DefinedTermDaoImpl.countPartOf(Set<T> definedTerms)");
|
|
532
|
Query query = getSession().createQuery("select count(distinct definedTerm) from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
|
|
533
|
query.setParameterList("definedTerms", definedTerms);
|
|
534
|
return (Long)query.uniqueResult();
|
|
535
|
}
|
|
536
|
|
|
537
|
@Override
|
|
538
|
public <T extends DefinedTermBase> List<T> getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
|
539
|
checkNotInPriorView("DefinedTermDaoImpl.getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber)");
|
|
540
|
Query query = getSession().createQuery("select distinct definedTerm from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
|
|
541
|
query.setParameterList("definedTerms", definedTerms);
|
|
542
|
|
|
543
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
|
544
|
|
|
545
|
@SuppressWarnings("unchecked")
|
|
546
|
List<T> r = query.list();
|
|
547
|
/**
|
|
548
|
* For some weird reason, hibernate returns proxies (extending the superclass), not the actual class on this,
|
|
549
|
* despite querying the damn database and returning the discriminator along with the rest of the object properties!
|
|
550
|
*
|
|
551
|
* Probably a bug in hibernate, but we'll manually deproxy for now since the objects are initialized anyway, the
|
|
552
|
* performance implications are small (we're swapping one array of references for another, not hitting the db or
|
|
553
|
* cache).
|
|
554
|
*/
|
|
555
|
List<T> results = new ArrayList<>();
|
|
556
|
if(!definedTerms.isEmpty()) {
|
|
557
|
for(T t : r) {
|
|
558
|
T deproxied = CdmBase.deproxy(t);
|
|
559
|
results.add(deproxied);
|
|
560
|
}
|
|
561
|
defaultBeanInitializer.initializeAll(results, propertyPaths);
|
|
562
|
}
|
|
563
|
return results;
|
|
564
|
}
|
|
565
|
|
|
566
|
@Override
|
|
567
|
public DefinedTermBase findByUri(URI uri) {
|
|
568
|
AuditEvent auditEvent = getAuditEventFromContext();
|
|
569
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
|
570
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.uri = :uri");
|
|
571
|
query.setParameter("uri", uri);
|
|
572
|
return (DefinedTermBase<?>)query.uniqueResult();
|
|
573
|
} else {
|
|
574
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
|
575
|
query.add(AuditEntity.property("uri").eq(uri));
|
|
576
|
return (DefinedTermBase<?>)query.getSingleResult();
|
|
577
|
}
|
|
578
|
}
|
|
579
|
|
|
580
|
@Override
|
|
581
|
public <T extends DefinedTermBase> List<T> listByTermType(TermType termType, Integer limit, Integer start,
|
|
582
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
583
|
Query query = getSession().createQuery("SELECT term FROM DefinedTermBase term WHERE term.termType = :termType");
|
|
584
|
query.setParameter("termType", termType);
|
|
585
|
|
|
586
|
@SuppressWarnings("unchecked")
|
|
587
|
List<T> result = deduplicateResult(query.list());
|
|
588
|
|
|
589
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
|
590
|
return result;
|
|
591
|
}
|
|
592
|
|
|
593
|
@Override
|
|
594
|
public <TERM extends DefinedTermBase> List<TERM> listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
|
595
|
// checkNotInPriorView("DefinedTermDaoImpl.listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths)");
|
|
596
|
|
|
597
|
Query query = getSession().createQuery("FROM " + clazz.getSimpleName());
|
|
598
|
|
|
599
|
@SuppressWarnings("unchecked")
|
|
600
|
List<TERM> result = deduplicateResult(query.list());
|
|
601
|
|
|
602
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
|
603
|
|
|
604
|
return result;
|
|
605
|
}
|
|
606
|
|
|
607
|
@Override
|
|
608
|
public <S extends DefinedTermBase> List<S> list(Class<S> type, Integer limit, Integer start,
|
|
609
|
List<OrderHint> orderHints, List<String> propertyPath) {
|
|
610
|
|
|
611
|
return deduplicateResult(super.list(type, limit, start, orderHints, propertyPath));
|
|
612
|
}
|
|
613
|
|
|
614
|
/**
|
|
615
|
* Workaround for https://dev.e-taxonomy.eu/redmine/issues/5871 and #5945
|
|
616
|
* Terms with multiple representations return identical duplicates
|
|
617
|
* due to eager representation loading. We expect these duplicates to appear
|
|
618
|
* in line wo we only compare one term with its predecessor. If it already
|
|
619
|
* exists we remove it from the result.
|
|
620
|
* @param orginals
|
|
621
|
* @return
|
|
622
|
*/
|
|
623
|
protected static <S extends CdmBase> List<S> deduplicateResult(List<S> orginals) {
|
|
624
|
List<S> result = new ArrayList<>();
|
|
625
|
Iterator<S> it = orginals.iterator();
|
|
626
|
S last = null;
|
|
627
|
while (it.hasNext()){
|
|
628
|
S a = it.next();
|
|
629
|
if (a != last){
|
|
630
|
if (!result.contains(a)){
|
|
631
|
result.add(a);
|
|
632
|
}
|
|
633
|
}
|
|
634
|
last = a;
|
|
635
|
}
|
|
636
|
return result;
|
|
637
|
}
|
|
638
|
|
|
639
|
@Override
|
|
640
|
public <S extends DefinedTermBase> List<S> list(Class<S> clazz, List<TermVocabulary> vocs, Integer limit, String pattern) {
|
|
641
|
return list(clazz, vocs, 0, limit, pattern, MatchMode.BEGINNING);
|
|
642
|
}
|
|
643
|
|
|
644
|
@Override
|
|
645
|
public <S extends DefinedTermBase> List<S> list(Class<S> clazz, List<TermVocabulary> vocs, Integer pageNumber, Integer limit, String pattern, MatchMode matchmode){
|
|
646
|
Session session = getSession();
|
|
647
|
if (clazz == null){
|
|
648
|
clazz = (Class)type;
|
|
649
|
}
|
|
650
|
Criteria crit = getSession().createCriteria(clazz, "term");
|
|
651
|
if (!StringUtils.isBlank(pattern)){
|
|
652
|
crit.createAlias("term.representations", "reps");
|
|
653
|
Disjunction or = Restrictions.disjunction();
|
|
654
|
if (matchmode == MatchMode.EXACT) {
|
|
655
|
or.add(Restrictions.eq("titleCache", matchmode.queryStringFrom(pattern)));
|
|
656
|
or.add(Restrictions.eq("reps.label", matchmode.queryStringFrom(pattern)));
|
|
657
|
} else {
|
|
658
|
or.add(Restrictions.like("titleCache", matchmode.queryStringFrom(pattern)));
|
|
659
|
or.add(Restrictions.like("reps.label", matchmode.queryStringFrom(pattern)));
|
|
660
|
}
|
|
661
|
crit.add(or);
|
|
662
|
}
|
|
663
|
|
|
664
|
if (limit != null && limit >= 0) {
|
|
665
|
crit.setMaxResults(limit);
|
|
666
|
}
|
|
667
|
|
|
668
|
if (vocs != null &&!vocs.isEmpty()){
|
|
669
|
crit.createAlias("term.vocabulary", "voc");
|
|
670
|
Disjunction or = Restrictions.disjunction();
|
|
671
|
for (TermVocabulary<?> voc: vocs){
|
|
672
|
Criterion criterion = Restrictions.eq("voc.id", voc.getId());
|
|
673
|
or.add(criterion);
|
|
674
|
}
|
|
675
|
crit.add(or);
|
|
676
|
}
|
|
677
|
|
|
678
|
crit.addOrder(Order.asc("titleCache"));
|
|
679
|
if (limit == null){
|
|
680
|
limit = 1;
|
|
681
|
}
|
|
682
|
crit.setFirstResult(0);
|
|
683
|
@SuppressWarnings("unchecked")
|
|
684
|
List<S> results = deduplicateResult(crit.list());
|
|
685
|
return results;
|
|
686
|
}
|
|
687
|
|
|
688
|
@Override
|
|
689
|
public <S extends DefinedTermBase> List<S> listByAbbrev(Class<S> clazz, List<TermVocabulary> vocs, Integer limit, String pattern, TermSearchField type) {
|
|
690
|
return listByAbbrev(clazz, vocs, 0, limit, pattern, MatchMode.BEGINNING, type);
|
|
691
|
}
|
|
692
|
|
|
693
|
@Override
|
|
694
|
public <S extends DefinedTermBase> List<S> listByAbbrev(Class<S> clazz, List<TermVocabulary> vocs, Integer pageNumber, Integer limit, String pattern, MatchMode matchmode, TermSearchField abbrevType){
|
|
695
|
|
|
696
|
if (clazz == null){
|
|
697
|
clazz = (Class)type;
|
|
698
|
}
|
|
699
|
Criteria crit = getSession().createCriteria(clazz, "type");
|
|
700
|
if (!StringUtils.isBlank(pattern)){
|
|
701
|
if (matchmode == MatchMode.EXACT) {
|
|
702
|
crit.add(Restrictions.eq(abbrevType.getKey(), matchmode.queryStringFrom(pattern)));
|
|
703
|
} else {
|
|
704
|
crit.add(Restrictions.like(abbrevType.getKey(), matchmode.queryStringFrom(pattern)));
|
|
705
|
}
|
|
706
|
}
|
|
707
|
if (limit != null && limit >= 0) {
|
|
708
|
crit.setMaxResults(limit);
|
|
709
|
}
|
|
710
|
|
|
711
|
if (vocs != null &&!vocs.isEmpty()){
|
|
712
|
crit.createAlias("type.vocabulary", "voc");
|
|
713
|
Disjunction or = Restrictions.disjunction();
|
|
714
|
for (TermVocabulary<?> voc: vocs){
|
|
715
|
Criterion criterion = Restrictions.eq("voc.id", voc.getId());
|
|
716
|
or.add(criterion);
|
|
717
|
}
|
|
718
|
crit.add(or);
|
|
719
|
}
|
|
720
|
|
|
721
|
crit.addOrder(Order.asc(abbrevType.getKey()));
|
|
722
|
if (limit == null){
|
|
723
|
limit = 1;
|
|
724
|
}
|
|
725
|
// int firstItem = (pageNumber - 1) * limit;
|
|
726
|
|
|
727
|
crit.setFirstResult(0);
|
|
728
|
@SuppressWarnings("unchecked")
|
|
729
|
List<S> results = deduplicateResult(crit.list());
|
|
730
|
return results;
|
|
731
|
}
|
|
732
|
|
|
733
|
|
|
734
|
@Override
|
|
735
|
public Collection<TermDto> getIncludesAsDto(
|
|
736
|
TermDto parentTerm) {
|
|
737
|
String queryString;
|
|
738
|
if (parentTerm.getTermType().equals(TermType.NamedArea)){
|
|
739
|
queryString = TermDto.getTermDtoSelectNamedArea();
|
|
740
|
}else{
|
|
741
|
queryString = TermDto.getTermDtoSelect();
|
|
742
|
}
|
|
743
|
queryString = queryString
|
|
744
|
+ "where a.partOf.uuid = :parentUuid";
|
|
745
|
Query query = getSession().createQuery(queryString);
|
|
746
|
query.setParameter("parentUuid", parentTerm.getUuid());
|
|
747
|
|
|
748
|
@SuppressWarnings("unchecked")
|
|
749
|
List<Object[]> result = query.list();
|
|
750
|
|
|
751
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
|
752
|
return list;
|
|
753
|
}
|
|
754
|
|
|
755
|
@Override
|
|
756
|
public Collection<TermDto> getKindOfsAsDto(TermDto parentTerm) {
|
|
757
|
|
|
758
|
String queryString;
|
|
759
|
if (parentTerm.getTermType().equals(TermType.NamedArea)){
|
|
760
|
queryString = TermDto.getTermDtoSelectNamedArea();
|
|
761
|
}else{
|
|
762
|
queryString = TermDto.getTermDtoSelect();
|
|
763
|
}
|
|
764
|
queryString = queryString + "where a.kindOf.uuid = :parentUuid";
|
|
765
|
Query query = getSession().createQuery(queryString);
|
|
766
|
query.setParameter("parentUuid", parentTerm.getUuid());
|
|
767
|
|
|
768
|
@SuppressWarnings("unchecked")
|
|
769
|
List<Object[]> result = query.list();
|
|
770
|
|
|
771
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
|
772
|
return list;
|
|
773
|
}
|
|
774
|
|
|
775
|
@Override
|
|
776
|
public Collection<TermDto> findByTitleAsDto(String title, TermType termType) {
|
|
777
|
String queryString = TermDto.getTermDtoSelect()
|
|
778
|
+ " where a.titleCache like :title "
|
|
779
|
+ (termType!=null?" and a.termType = :termType ":"");
|
|
780
|
|
|
781
|
title = title.replace("*", "%");
|
|
782
|
Query query = getSession().createQuery(queryString);
|
|
783
|
query.setParameter("title", "%"+title+"%");
|
|
784
|
if(termType!=null){
|
|
785
|
query.setParameter("termType", termType);
|
|
786
|
}
|
|
787
|
|
|
788
|
@SuppressWarnings("unchecked")
|
|
789
|
List<Object[]> result = query.list();
|
|
790
|
|
|
791
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
|
792
|
return list;
|
|
793
|
}
|
|
794
|
|
|
795
|
@Override
|
|
796
|
public Collection<TermDto> findByTypeAsDto(TermType termType) {
|
|
797
|
if (termType == null){
|
|
798
|
return null;
|
|
799
|
}
|
|
800
|
String queryString = TermDto.getTermDtoSelect()
|
|
801
|
+ " where a.termType = :termType ";
|
|
802
|
Query query = getSession().createQuery(queryString);
|
|
803
|
|
|
804
|
query.setParameter("termType", termType);
|
|
805
|
|
|
806
|
@SuppressWarnings("unchecked")
|
|
807
|
List<Object[]> result = query.list();
|
|
808
|
|
|
809
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
|
810
|
return list;
|
|
811
|
}
|
|
812
|
|
|
813
|
@Override
|
|
814
|
public Collection<TermDto> findByUriAsDto(URI uri, String termLabel, TermType termType) {
|
|
815
|
String queryString = TermDto.getTermDtoSelect()
|
|
816
|
+ " where a.uri like :uri "
|
|
817
|
+ (termType!=null?" and a.termType = :termType ":"")
|
|
818
|
+ (termLabel!=null?" and a.titleCache = :termLabel ":"")
|
|
819
|
;
|
|
820
|
Query query = getSession().createQuery(queryString);
|
|
821
|
query.setParameter("uri", uri.toString());
|
|
822
|
if(termLabel!=null){
|
|
823
|
query.setParameter("termLabel", "%"+termLabel+"%");
|
|
824
|
}
|
|
825
|
if(termType!=null){
|
|
826
|
query.setParameter("termType", termType);
|
|
827
|
}
|
|
828
|
|
|
829
|
@SuppressWarnings("unchecked")
|
|
830
|
List<Object[]> result = query.list();
|
|
831
|
|
|
832
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
|
833
|
return list;
|
|
834
|
}
|
|
835
|
|
|
836
|
@Override
|
|
837
|
public List<TermDto> getSupportedStatesForFeature(UUID featureUuid){
|
|
838
|
List<TermDto> list = new ArrayList<>();
|
|
839
|
String supportedCategoriesQueryString = "SELECT cat.uuid "
|
|
840
|
+ "from DefinedTermBase t "
|
|
841
|
+ "join t.supportedCategoricalEnumerations as cat "
|
|
842
|
+ "where t.uuid = :featureUuid";
|
|
843
|
Query supportedCategoriesQuery = getSession().createQuery(supportedCategoriesQueryString);
|
|
844
|
supportedCategoriesQuery.setParameter("featureUuid", featureUuid);
|
|
845
|
@SuppressWarnings("unchecked")
|
|
846
|
List<UUID> supportedCategories = supportedCategoriesQuery.list();
|
|
847
|
if(supportedCategories.isEmpty()){
|
|
848
|
return list;
|
|
849
|
}
|
|
850
|
|
|
851
|
String queryString = TermDto.getTermDtoSelect()
|
|
852
|
+ "where v.uuid in (:supportedCategories) "
|
|
853
|
+ "order by a.titleCache";
|
|
854
|
Query query = getSession().createQuery(queryString);
|
|
855
|
query.setParameterList("supportedCategories", supportedCategories);
|
|
856
|
|
|
857
|
@SuppressWarnings("unchecked")
|
|
858
|
List<Object[]> result = query.list();
|
|
859
|
|
|
860
|
list = TermDto.termDtoListFrom(result);
|
|
861
|
return list;
|
|
862
|
}
|
|
863
|
|
|
864
|
@Override
|
|
865
|
public Collection<TermDto> findByUUIDsAsDto(List<UUID> uuidList) {
|
|
866
|
List<TermDto> list = new ArrayList<>();
|
|
867
|
if (uuidList == null || uuidList.isEmpty()){
|
|
868
|
return null;
|
|
869
|
}
|
|
870
|
|
|
871
|
String queryString = TermDto.getTermDtoSelect()
|
|
872
|
+ "where a.uuid in :uuidList "
|
|
873
|
+ "order by a.titleCache";
|
|
874
|
Query query = getSession().createQuery(queryString);
|
|
875
|
query.setParameterList("uuidList", uuidList);
|
|
876
|
|
|
877
|
@SuppressWarnings("unchecked")
|
|
878
|
List<Object[]> result = query.list();
|
|
879
|
|
|
880
|
list = TermDto.termDtoListFrom(result);
|
|
881
|
return list;
|
|
882
|
}
|
|
883
|
|
|
884
|
@Override
|
|
885
|
public Collection<TermDto> findFeatureByUUIDsAsDto(List<UUID> uuidList) {
|
|
886
|
List<TermDto> list = new ArrayList<>();
|
|
887
|
if (uuidList == null || uuidList.isEmpty()){
|
|
888
|
return null;
|
|
889
|
}
|
|
890
|
|
|
891
|
String queryString = FeatureDto.getTermDtoSelect()
|
|
892
|
+ "where a.uuid in :uuidList "
|
|
893
|
+ "order by a.titleCache";
|
|
894
|
Query query = getSession().createQuery(queryString);
|
|
895
|
query.setParameterList("uuidList", uuidList);
|
|
896
|
|
|
897
|
@SuppressWarnings("unchecked")
|
|
898
|
List<Object[]> result = query.list();
|
|
899
|
|
|
900
|
list = FeatureDto.termDtoListFrom(result);
|
|
901
|
return list;
|
|
902
|
}
|
|
903
|
|
|
904
|
@Override
|
|
905
|
public Collection<TermDto> findFeatureByTitleAsDto(String pattern) {
|
|
906
|
String queryString = FeatureDto.getTermDtoSelect()
|
|
907
|
+ " where a.titleCache like :title "
|
|
908
|
+ " and a.termType = :termType ";
|
|
909
|
|
|
910
|
pattern = pattern.replace("*", "%");
|
|
911
|
Query query = getSession().createQuery(queryString);
|
|
912
|
query.setParameter("title", "%"+pattern+"%");
|
|
913
|
query.setParameter("termType", TermType.Feature);
|
|
914
|
|
|
915
|
|
|
916
|
@SuppressWarnings("unchecked")
|
|
917
|
List<Object[]> result = query.list();
|
|
918
|
|
|
919
|
List<TermDto> list = FeatureDto.termDtoListFrom(result);
|
|
920
|
return list;
|
|
921
|
}
|
|
922
|
}
|