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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import java.util.HashSet;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.reference.IGeneric;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.test.unit.EntityTestBase;
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/**
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* @author a.mueller
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*/
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public class NonViralNameTest extends EntityTestBase {
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private static Logger logger = Logger.getLogger(NonViralNameTest.class);
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private INonViralName nonViralName1;
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private INonViralName nonViralName2;
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@Before
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public void setUp() throws Exception {
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nonViralName1 = TaxonNameFactory.NewBotanicalInstance(null);
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nonViralName2 = TaxonNameFactory.NewBotanicalInstance(null);
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}
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// ******************* TESTS ***********************************/
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@Test
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public final void testGenerateTitle() {
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String fullName = "Abies alba subsp. beta (L.) Mill.";
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nonViralName1.setGenusOrUninomial("Genus");
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nonViralName1.setSpecificEpithet("spec");
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nonViralName1.setRank(Rank.SPECIES());
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assertEquals("Genus spec", nonViralName1.generateTitle());
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assertEquals("", nonViralName2.generateTitle());
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}
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@Test
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public final void testIsCodeCompliant() {
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logger.warn("Not yet implemented"); // TODO
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}
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@Test
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public final void testNonViralName() {
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assertNotNull(nonViralName1);
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}
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@Test
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public final void testNonViralNameRank() {
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INonViralName nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.GENUS());
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assertNotNull(nonViralName);
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}
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@Test
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public final void testNonViralNameRankStringStringStringAgentINomenclaturalReferenceString() {
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Team agent = Team.NewInstance();
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Reference article = ReferenceFactory.newArticle();
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HomotypicalGroup homotypicalGroup = HomotypicalGroup.NewInstance();
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INonViralName nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.GENUS(), "Genus", "infraGen", "species", "infraSpec", agent, article, "mikro", homotypicalGroup);
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assertEquals("Genus", nonViralName.getGenusOrUninomial() );
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assertEquals("infraGen", nonViralName.getInfraGenericEpithet());
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assertEquals("species", nonViralName.getSpecificEpithet() );
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assertEquals("infraSpec", nonViralName.getInfraSpecificEpithet());
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assertEquals(agent, nonViralName.getCombinationAuthorship() );
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assertEquals(article, nonViralName.getNomenclaturalReference() );
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assertEquals("mikro", nonViralName.getNomenclaturalMicroReference() );
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getCombinationAuthorship()}.
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#setCombinationAuthorship(eu.etaxonomy.cdm.model.agent.Agent)}.
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*/
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@Test
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public final void testGetSetCombinationAuthorship() {
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Team team1 = Team.NewInstance();
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nonViralName1.setCombinationAuthorship(team1);
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assertEquals(team1, nonViralName1.getCombinationAuthorship());
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nonViralName1.setCombinationAuthorship(null);
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assertEquals(null, nonViralName1.getCombinationAuthorship());
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nonViralName2.setCombinationAuthorship(null);
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assertEquals(null, nonViralName2.getCombinationAuthorship());
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}
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@Test
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public final void testGetSetExCombinationAuthorship() {
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Team team1 = Team.NewInstance();
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nonViralName1.setExCombinationAuthorship(team1);
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assertEquals(team1, nonViralName1.getExCombinationAuthorship());
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nonViralName1.setExCombinationAuthorship(null);
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assertEquals(null, nonViralName1.getExCombinationAuthorship());
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nonViralName2.setExCombinationAuthorship(null);
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assertEquals(null, nonViralName2.getExCombinationAuthorship());
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}
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@Test
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public final void testGetSetBasionymAuthorship() {
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Team team1 = Team.NewInstance();
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nonViralName1.setBasionymAuthorship(team1);
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assertEquals(team1, nonViralName1.getBasionymAuthorship());
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nonViralName1.setBasionymAuthorship(null);
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assertEquals(null, nonViralName1.getBasionymAuthorship());
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nonViralName2.setBasionymAuthorship(null);
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assertEquals(null, nonViralName2.getBasionymAuthorship());
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}
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@Test
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public final void testGetSetExBasionymAuthorship() {
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Team team1 = Team.NewInstance();
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nonViralName1.setExBasionymAuthorship(team1);
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assertEquals(team1, nonViralName1.getExBasionymAuthorship());
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nonViralName1.setExBasionymAuthorship(null);
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assertEquals(null, nonViralName1.getExBasionymAuthorship());
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nonViralName2.setExBasionymAuthorship(null);
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assertEquals(null, nonViralName2.getExBasionymAuthorship());
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}
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@Test
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public final void testGetSetGenusOrUninomial() {
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nonViralName1.setGenusOrUninomial("Genus");
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assertEquals("Genus", nonViralName1.getGenusOrUninomial());
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nonViralName1.setGenusOrUninomial(null);
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assertEquals(null, nonViralName1.getGenusOrUninomial());
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nonViralName2.setGenusOrUninomial(null);
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assertEquals(null, nonViralName2.getGenusOrUninomial());
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}
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@Test
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public final void testGetSetInfraGenericEpithet() {
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nonViralName1.setInfraGenericEpithet("InfraGenus");
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assertEquals("InfraGenus", nonViralName1.getInfraGenericEpithet());
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nonViralName1.setInfraGenericEpithet(null);
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assertEquals(null, nonViralName1.getInfraGenericEpithet());
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nonViralName2.setInfraGenericEpithet(null);
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assertEquals(null, nonViralName2.getInfraGenericEpithet());
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}
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@Test
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public final void testGetSetSpecificEpithet() {
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nonViralName1.setSpecificEpithet("specEpi");
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assertEquals("specEpi", nonViralName1.getSpecificEpithet());
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nonViralName1.setSpecificEpithet(null);
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assertEquals(null, nonViralName1.getSpecificEpithet());
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nonViralName2.setSpecificEpithet(null);
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assertEquals(null, nonViralName2.getSpecificEpithet());
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}
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@Test
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public final void testGetSetInfraSpecificEpithet() {
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nonViralName1.setInfraSpecificEpithet("InfraSpecEpi");
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assertEquals("InfraSpecEpi", nonViralName1.getInfraSpecificEpithet());
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nonViralName1.setInfraSpecificEpithet(null);
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assertEquals(null, nonViralName1.getInfraSpecificEpithet());
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nonViralName2.setInfraSpecificEpithet(null);
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assertEquals(null, nonViralName2.getInfraSpecificEpithet());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#setAuthorshipCache(java.lang.String)}.
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getAuthorshipCache()}.
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* NOT FINISHED YET
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*/
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@Test
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public final void testGetSetAuthorshipCache() {
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String strTeam1 = "Team1";
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String strTeam2 = "Team2";
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String strTeam3 = "Team3";
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IGeneric ref1 = ReferenceFactory.newGeneric();
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ref1.setTitleCache("RefTitle",true);
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Team team1 = Team.NewInstance();
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Team team2 = Team.NewInstance();
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team1.setNomenclaturalTitleCache(strTeam1, true);
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team2.setNomenclaturalTitleCache(strTeam2, true);
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nonViralName1.setGenusOrUninomial("Abies");
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nonViralName1.setSpecificEpithet("alba");
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nonViralName1.setNomenclaturalReference(ref1);
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Assert.assertEquals("Abies alba", nonViralName1.getNameCache());
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nonViralName1.setCombinationAuthorship(team1);
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assertEquals(team1, nonViralName1.getCombinationAuthorship());
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assertEquals(strTeam1, nonViralName1.getAuthorshipCache());
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Assert.assertEquals("Abies alba "+strTeam1, nonViralName1.getTitleCache());
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Assert.assertEquals("Abies alba "+strTeam1+ ", RefTitle", nonViralName1.getFullTitleCache());
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nonViralName1.setAuthorshipCache(strTeam2);
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assertEquals(strTeam2, nonViralName1.getAuthorshipCache());
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nonViralName1.setGenusOrUninomial("Calendula");
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Assert.assertEquals("Calendula alba "+strTeam2, nonViralName1.getTitleCache());
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nonViralName1.setAuthorshipCache(strTeam3);
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Assert.assertEquals("Calendula alba "+strTeam3, nonViralName1.getTitleCache());
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Assert.assertEquals("Calendula alba "+strTeam3+ ", RefTitle", nonViralName1.getFullTitleCache());
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nonViralName1.setCombinationAuthorship(null);
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assertEquals(null, nonViralName1.getCombinationAuthorship());
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}
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@Test
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public final void testGetChildAndParentRelationships() {
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INonViralName nonViralName1 = TaxonNameFactory.NewNonViralInstance(null);
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assertEquals(0, nonViralName1.getHybridParentRelations().size());
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assertEquals(0, nonViralName1.getHybridChildRelations().size());
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IBotanicalName femaleParent = TaxonNameFactory.NewBotanicalInstance(null);
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HybridRelationship hybridRelationship = new HybridRelationship(nonViralName1, femaleParent, HybridRelationshipType.FEMALE_PARENT(), null );
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assertEquals(1, nonViralName1.getHybridChildRelations().size());
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assertEquals(hybridRelationship, nonViralName1.getHybridChildRelations().iterator().next());
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assertEquals(1, femaleParent.getHybridParentRelations().size());
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}
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@Test
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public final void testAddHybridRelationships() {
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INonViralName nonViralName1 = TaxonNameFactory.NewNonViralInstance(null);
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assertEquals(0, nonViralName1.getHybridParentRelations().size());
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assertEquals(0, nonViralName1.getHybridChildRelations().size());
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IBotanicalName femaleParent = TaxonNameFactory.NewBotanicalInstance(null);
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IBotanicalName maleParent = TaxonNameFactory.NewBotanicalInstance(null);
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nonViralName1.addHybridParent(femaleParent, HybridRelationshipType.MALE_PARENT(), null);
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nonViralName1.addHybridParent(maleParent, HybridRelationshipType.MALE_PARENT(), null);
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assertEquals(2, nonViralName1.getHybridChildRelations().size());
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assertEquals(0, nonViralName1.getHybridParentRelations().size());
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assertEquals(1, maleParent.getHybridParentRelations().size());
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assertEquals(1, femaleParent.getHybridParentRelations().size());
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assertEquals(0, maleParent.getHybridChildRelations().size());
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assertEquals(0, femaleParent.getHybridChildRelations().size());
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}
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@Test(expected=IllegalArgumentException.class)
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public final void testAddHybridRelationship() {
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INonViralName nonViralName1 = TaxonNameFactory.NewNonViralInstance(null);
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assertEquals(0, nonViralName1.getHybridParentRelations().size());
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assertEquals(0, nonViralName1.getHybridChildRelations().size());
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TaxonName botanicalName2 = TaxonNameFactory.NewNonViralInstance(null);
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botanicalName2.addHybridRelationship(null);
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}
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@Test
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public final void testRemoveHybridRelationship() {
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INonViralName botanicalName1 = TaxonNameFactory.NewNonViralInstance(null);
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assertEquals(0, botanicalName1.getHybridParentRelations().size());
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assertEquals(0, botanicalName1.getHybridChildRelations().size());
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IBotanicalName femaleParent = TaxonNameFactory.NewBotanicalInstance(null);
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TaxonName maleParent = TaxonNameFactory.NewNonViralInstance(null);
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IZoologicalName child = TaxonNameFactory.NewZoologicalInstance(null);
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botanicalName1.addHybridParent(femaleParent, HybridRelationshipType.FEMALE_PARENT(), null);
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botanicalName1.addHybridParent(maleParent, HybridRelationshipType.MALE_PARENT(), null);
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botanicalName1.addHybridChild(child, HybridRelationshipType.FIRST_PARENT(), null);
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assertEquals(2, botanicalName1.getHybridChildRelations().size());
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assertEquals(1, botanicalName1.getHybridParentRelations().size());
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assertEquals(1, child.getHybridChildRelations().size());
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botanicalName1.removeHybridParent(femaleParent);
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assertEquals(1, botanicalName1.getHybridChildRelations().size());
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assertEquals(1, botanicalName1.getHybridParentRelations().size());
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botanicalName1.removeHybridParent(maleParent);
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assertEquals(0, botanicalName1.getHybridChildRelations().size());
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assertEquals(1, botanicalName1.getHybridParentRelations().size());
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botanicalName1.removeHybridChild(child);
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assertEquals(0, botanicalName1.getHybridParentRelations().size());
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//null
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botanicalName1.removeHybridRelationship(null);
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assertEquals(0, botanicalName1.getHybridChildRelations().size());
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}
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@Test
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public void testClone(){
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Team combinationAuthor = Team.NewTitledInstance("CombinationAuthor", "comb. auth.");
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nonViralName1.setRank(Rank.SUBSPECIES());
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nonViralName1.setCombinationAuthorship(combinationAuthor);
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nonViralName1.setGenusOrUninomial("Aus");
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nonViralName1.setInfraGenericEpithet("Infaus");
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nonViralName1.setSpecificEpithet("bus");
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nonViralName1.setInfraSpecificEpithet("infrabus");
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nonViralName1.setBinomHybrid(true);
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INonViralName parent = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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INonViralName parent2 = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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INonViralName child = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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INonViralName child2 = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName1.addHybridParent(parent, HybridRelationshipType.FIRST_PARENT(), "parent rule");
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nonViralName1.addHybridParent(parent2, HybridRelationshipType.SECOND_PARENT(), "parent rule2");
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HybridRelationship childRel = nonViralName1.addHybridChild(child, HybridRelationshipType.FEMALE_PARENT(), "child rule");
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INonViralName clone = (nonViralName1).clone();
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Assert.assertEquals("Genus should be equal", "Aus", clone.getGenusOrUninomial());
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Assert.assertEquals("Infragenus should be equal", "Infaus", clone.getInfraGenericEpithet());
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Assert.assertEquals("Specific epithet should be equal", "bus", clone.getSpecificEpithet());
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Assert.assertEquals("Infraspecific epithet should be equal", "infrabus", clone.getInfraSpecificEpithet());
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Assert.assertEquals("BinomHybrid should be equal", true, clone.isBinomHybrid());
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Assert.assertSame("Combination author should be the same", combinationAuthor, clone.getCombinationAuthorship());
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Assert.assertEquals("NameCache should be equal", nonViralName1.getNameCache(), clone.getNameCache());
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Assert.assertEquals("AuthorshipCache should be equal", nonViralName1.getAuthorshipCache(), clone.getAuthorshipCache());
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clone.setSpecificEpithet("sub");
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Assert.assertEquals("NameCache should be changed", "Aus (\u00D7Infaus) sub subsp. infrabus", clone.getNameCache());
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//hybrid parents of clone
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Assert.assertEquals("There should be exactly 2 hybrid relationships in which the clone takes the child role", 2, clone.getHybridChildRelations().size());
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Set<TaxonName> parentSet = new HashSet<>();
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Set<TaxonName> childSet = new HashSet<>();
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for (Object object : clone.getHybridChildRelations()){
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HybridRelationship childRelation = (HybridRelationship)object;
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TaxonName relatedFrom = childRelation.getRelatedFrom();
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parentSet.add(relatedFrom);
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TaxonName relatedTo = childRelation.getRelatedTo();
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childSet.add(relatedTo);
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}
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Assert.assertTrue("Parent set should contain parent1", parentSet.contains(parent));
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Assert.assertTrue("Parent set should contain parent2", parentSet.contains(parent2));
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Assert.assertTrue("Child set should contain clone", childSet.contains(clone));
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//hybrid child of clone
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Assert.assertEquals("There should be exactly 1 hybrid relationship in which the clone takes the parent role", 1, clone.getHybridParentRelations().size());
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HybridRelationship parentRelation = clone.getHybridParentRelations().iterator().next();
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Assert.assertSame("Clone should be parent in parentRelationship", clone, parentRelation.getRelatedFrom());
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Assert.assertSame("Child should be child in parentRelationship", child, parentRelation.getRelatedTo());
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Assert.assertSame("Relationship type should be cloned correctly", HybridRelationshipType.FEMALE_PARENT(), parentRelation.getType());
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Assert.assertEquals("Rule should be cloned correctly", "child rule", parentRelation.getRuleConsidered());
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Assert.assertEquals("Rule should be cloned correctly", childRel.getRuleConsidered(), parentRelation.getRuleConsidered());
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//TODO string can be same but RuleConsidered object must differ, but this has no getter currently
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// Assert.assertNotSame("Rule should be cloned correctly", childRel.getRuleConsidered(), parentRelation.getRuleConsidered());
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}
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}
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