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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.database.update.v47_50;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.database.update.ClassBaseTypeUpdater;
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import eu.etaxonomy.cdm.database.update.ColumnAdder;
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import eu.etaxonomy.cdm.database.update.ColumnNameChanger;
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import eu.etaxonomy.cdm.database.update.ColumnRemover;
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import eu.etaxonomy.cdm.database.update.ColumnTypeChanger;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdater;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.MnTableCreator;
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import eu.etaxonomy.cdm.database.update.SchemaUpdaterBase;
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import eu.etaxonomy.cdm.database.update.SimpleSchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.TableCreator;
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import eu.etaxonomy.cdm.database.update.TableNameChanger;
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import eu.etaxonomy.cdm.database.update.TermRepresentationUpdater;
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import eu.etaxonomy.cdm.database.update.v41_47.SchemaUpdater_41_47;
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/**
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/**
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* @author a.mueller
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* @date 09.06.2017
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*
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*/
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public class SchemaUpdater_47_50 extends SchemaUpdaterBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(SchemaUpdater_47_50.class);
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private static final String endSchemaVersion = "5.0.0.0.20180514";
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private static final String startSchemaVersion = "4.7.0.0.201710040000";
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// ********************** FACTORY METHOD *************************************
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public static SchemaUpdater_47_50 NewInstance() {
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return new SchemaUpdater_47_50();
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}
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/**
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* @param startSchemaVersion
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* @param endSchemaVersion
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*/
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protected SchemaUpdater_47_50() {
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super(startSchemaVersion, endSchemaVersion);
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}
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@Override
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protected List<ISchemaUpdaterStep> getUpdaterList() {
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String stepName;
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String tableName;
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ISchemaUpdaterStep step;
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String newColumnName;
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String query;
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List<ISchemaUpdaterStep> stepList = new ArrayList<>();
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//#6581 make nomenclatural reference and OriginalSource
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stepName = "Make nomenclatural reference and OriginalSource";
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tableName = "TaxonName";
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newColumnName = "nomenclaturalSource_id";
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String referencedTable = "OriginalSourceBase";
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step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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stepList.add(step);
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//#7109 nom. valid => nom. val.
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stepName = "nom valid => nom. val. (abbrevLabel)";
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UUID uuidTerm = UUID.fromString("bd036217-5499-4ccd-8f4c-72e06158db93");
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UUID uuidLanguage = UUID.fromString("160a5b6c-87f5-4422-9bda-78cd404c179e");
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step = TermRepresentationUpdater.NewInstance(stepName, uuidTerm,
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null, null, "nom. val.", uuidLanguage);
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stepList.add(step);
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//... idInVoc
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stepName = "nom valid => nom. val. (idInVocabulary)";
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query = "UPDATE @@DefinedTermBase@@ "
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+ " SET idInVocabulary = 'nom. val.' "
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+ " WHERE uuid = '" + uuidTerm + "'";
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tableName = "DefinedTermBase";
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step = SimpleSchemaUpdaterStep.NewAuditedInstance(stepName, query, tableName, -99);
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stepList.add(step);
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//#7074 change type for Media.mediaCreated
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changeTypeMediaCreated(stepList);
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//#6752 add Reference.datePublished_verbatimDate
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stepName = "Add Reference.datePublished_verbatimDate";
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tableName = "Reference";
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newColumnName = "datePublished_verbatimDate";
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT);
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stepList.add(step);
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//#7096 Add second symbol attribute to DefinedTermBase
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stepName = "Add second symbol to DefinedTermBase";
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tableName = "DefinedTermBase";
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newColumnName = "symbol2";
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int length = 30;
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, length, INCLUDE_AUDIT);
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stepList.add(step);
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//#6879 Update uuid and name for admin user group
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stepName = "Update uuid and name for admin user group";
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query = "UPDATE @@PermissionGroup@@ "
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+ " SET uuid='1739df71-bf73-4dc6-8320-aaaf72cb555f', name='Admin' "
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+ " WHERE name='admin' or name='Admin'";
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step = SimpleSchemaUpdaterStep.NewNonAuditedInstance(stepName, query, -99);
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stepList.add(step);
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//#7405 Rename WorkingSet to DescriptiveDataSet
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String oldTableName = "WorkingSet";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_Annotation";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_DescriptionBase";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_Marker";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_NamedArea";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_Representation";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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oldTableName = "WorkingSet_TaxonNode";
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changeSingleWorkingSetTableName(stepList, oldTableName);
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//#2335 Make DescriptiveDataSet IdentifiableEntity
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stepName = "Make DescriptiveDataSet IdentifiableEntity";
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tableName = "DescriptiveDataSet";
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step = ClassBaseTypeUpdater.NewAnnotatableToIdentifiableInstance(stepName, tableName, INCLUDE_AUDIT);
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stepList.add(step);
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//TODO add titleCache updater, but maybe not necessary as real data does not really exist
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//except for Campanula test data, and it is easy to update via TaxEditor cache updater
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//#7374 Set titleCache of feature trees to protected
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stepName = "Set titleCache of feature trees to protected";
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query = "UPDATE @@FeatureTree@@ "
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+ " SET protectedTitleCache = @TRUE@ ";
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tableName = "FeatureTree";
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step = SimpleSchemaUpdaterStep.NewAuditedInstance(stepName, query, tableName, -99);
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stepList.add(step);
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//#7238 rename lastName and firstName
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stepName = "rename lastName";
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tableName = "AgentBase";
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String oldColumnName = "lastname";
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newColumnName = "familyName";
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int size = 255;
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step = ColumnNameChanger.NewVarCharInstance(stepName, tableName, oldColumnName, newColumnName, size, INCLUDE_AUDIT);
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stepList.add(step);
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//... firstName
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stepName = "rename firstName";
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tableName = "AgentBase";
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oldColumnName = "firstname";
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newColumnName = "givenName";
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size = 255;
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step = ColumnNameChanger.NewVarCharInstance(stepName, tableName, oldColumnName, newColumnName, size, INCLUDE_AUDIT);
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stepList.add(step);
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//#7210 Add salt field for User
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stepName = "Add salt field for User";
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tableName = "UserAccount";
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newColumnName = "salt";
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, length, INCLUDE_AUDIT);
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stepList.add(step);
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//#6943 Add combination 'in'-author
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stepName = "Add combination 'in'-author";
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tableName = "TaxonName";
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newColumnName = "inCombinationAuthorship_id";
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referencedTable = "AgentBase";
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step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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stepList.add(step);
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//#6943 Add basionym 'in'-author
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stepName = "Add basionym 'in'-author";
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tableName = "TaxonName";
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newColumnName = "inBasionymAuthorship_id";
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referencedTable = "AgentBase";
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step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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stepList.add(step);
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//#6916 Link IntextReference to OriginalSource
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stepName = "Link IntextReference to OriginalSource";
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tableName = "IntextReference";
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newColumnName = "source_id";
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referencedTable = "OriginalSourceBase";
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step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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stepList.add(step);
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//#6720 Make individual count a string
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stepName = "Make individual count a string";
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tableName = "SpecimenOrObservationBase";
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String columnName = "individualCount";
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size = 255;
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step = ColumnTypeChanger.NewInt2StringInstance(stepName, tableName, columnName, size, INCLUDE_AUDIT, null, !NOT_NULL);
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stepList.add(step);
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updateSpecimenTypeDesignationStatusOrder(stepList);
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//#7144 Set Country area level
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stepName = "Set Country area level";
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query = " UPDATE @@DefinedTermBase@@ " +
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" SET level_id = ( SELECT id FROM (SELECT id FROM DefinedTermBase WHERE uuid = '79db63a4-1563-461e-8e41-48f5722feca4') as drv) " +
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" WHERE DTYPE = 'Country' ";
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step = SimpleSchemaUpdaterStep.NewNonAuditedInstance(stepName, query, -99);
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stepList.add(step);
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//#6588
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stepName = "Add ExternalLink table";
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tableName = "ExternalLink";
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String[] columnNames = new String[]{"linkType","uri","size"};
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String[] referencedTables = new String[]{null, null, null};
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String[] columnTypes = new String[]{"string_10","clob","int"};
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step = TableCreator.NewVersionableInstance(stepName, tableName,
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columnNames, columnTypes, referencedTables, INCLUDE_AUDIT);
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stepList.add(step);
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//add i18n description
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stepName= "Add i18n description to ExternalLink";
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String firstTableName = "ExternalLink";
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String attributeName = "description";
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step = MnTableCreator.NewDescriptionInstance(stepName, firstTableName, null, attributeName, INCLUDE_AUDIT);
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stepList.add(step);
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//#6588 add link to sources
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stepName= "Add external link to sources";
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firstTableName = "OriginalSourceBase";
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String secondTableName = "ExternalLink";
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attributeName = "links";
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boolean isList = false;
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step = MnTableCreator.NewMnInstance(stepName, firstTableName, null, secondTableName, null, attributeName, INCLUDE_AUDIT, isList, IS_1_TO_M);
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stepList.add(step);
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// //7276 Make User.emailAddress a unique field
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// //TODO H2 / PostGreSQL / SQL Server
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// //User.email unique
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// stepName = "Update User.emailAdress unique index";
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// tableName = "UserAccount";
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// columnName = "emailAddress";
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// step = UsernameConstraintUpdater.NewInstance(stepName, tableName, columnName);
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// stepList.add(step);
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return stepList;
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}
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/**
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* @param stepList
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*/
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private void changeTypeMediaCreated(List<ISchemaUpdaterStep> stepList) {
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//rename old column
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String stepName = "Rename Media.mediaCreated";
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String tableName = "Media";
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String oldColumnName = "mediaCreated";
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String newColumnName = "mediaCreatedOld";
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ISchemaUpdaterStep step = ColumnNameChanger.NewDateTimeInstance(stepName, tableName, oldColumnName, newColumnName, INCLUDE_AUDIT);
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stepList.add(step);
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//add timeperiod columns
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stepName = "Add mediaCreated_start";
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tableName = "Media";
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newColumnName = "mediaCreated_start";
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int size = 50;
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, size, INCLUDE_AUDIT);
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stepList.add(step);
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stepName = "Add mediaCreated_end";
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newColumnName = "mediaCreated_end";
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, size, INCLUDE_AUDIT);
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stepList.add(step);
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stepName = "Add mediaCreated_freetext";
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newColumnName = "mediaCreated_freetext";
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT);
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stepList.add(step);
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//move data
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stepName = "Copy mediaCreated to new columns";
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String query = "UPDATE @@Media@@ "
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+ " SET mediaCreated_start = Left(Replace(Replace(Replace(mediaCreatedOld, '-', ''), ':', ''), ' ', '_'), 13)"
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+ " WHERE mediaCreatedOld IS NOT NULL ";
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step = SimpleSchemaUpdaterStep.NewAuditedInstance(stepName, query, tableName, -99);
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stepList.add(step);
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//delete old column
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stepName = "Remove old mediaCreated";
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String columnName = "mediaCreatedOld";
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ColumnRemover.NewInstance(stepName, tableName, columnName, INCLUDE_AUDIT);
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stepList.add(step);
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}
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/**
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* @param stepList
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*/
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private void updateSpecimenTypeDesignationStatusOrder(List<ISchemaUpdaterStep> stepList) {
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VocabularyOrderUpdater updater = VocabularyOrderUpdater.NewInstance(stepList);
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updater.add("a407dbc7-e60c-46ff-be11-eddf4c5a970d", 1);
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updater.add("05002d46-083e-4b27-8731-2e7c28a8825c", 2);
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updater.add("93ef8257-0a08-47bb-9b36-542417ae7560", 3);
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updater.add("7a1a8a53-78f4-4fc0-89f7-782e94992d08", 4);
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updater.add("f3b60bdb-4638-4ca9-a0c7-36e77d8459bb", 5);
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updater.add("052a5ff0-8e9a-4355-b24f-5e4bb6071f44", 6);
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updater.add("26e13359-8f77-4e40-a85a-56c01782fce0", 7);
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updater.add("7afc2f4f-f70a-4aa5-80a5-87764f746bde", 8);
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updater.add("989a2715-71d5-4fbe-aa9a-db9168353744", 9);
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updater.add("95b90696-e103-4bc0-b60b-c594983fb566", 10);
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updater.add("eb7df2e5-d9a7-479d-970c-c6f2b0a761d7", 11);
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updater.add("497137f3-b614-4183-8a22-97fcd6e2bdd8", 12);
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updater.add("7244bc51-14d8-41a6-9524-7dc5303bba29", 13);
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updater.add("0c39e2a5-2fe0-4d4f-819a-f609b5340339", 14);
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updater.add("01d91053-7004-4984-aa0d-9f4de59d6205", 15);
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updater.add("8d2fed1f-242e-4bcf-bbd7-e85133e479dc", 16);
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updater.add("49c96cae-6be6-401e-9b36-1bc12d9dc8f9", 17);
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updater.add("643513d0-32f5-46ba-840b-d9b9caf8160f", 18);
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updater.add("b7807acc-f559-474e-ad4a-e7a41e085e34", 19);
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updater.add("230fd762-b143-49de-ac2e-744bcc48a63b", 20);
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updater.add("7194020b-a326-4b47-9bfe-9f31a30aba7f", 21);
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}
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/**
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* @param #6368
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*/
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private void changeSingleWorkingSetTableName(List<ISchemaUpdaterStep> stepList, String oldTableName) {
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String stepName = "Rename " + oldTableName;
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String newTableName = oldTableName.replace("WorkingSet", "DescriptiveDataSet");
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ISchemaUpdaterStep step = TableNameChanger.NewInstance(stepName, oldTableName, newTableName, INCLUDE_AUDIT);
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stepList.add(step);
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if (oldTableName.contains("_")){
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stepName = "Rename " + oldTableName + ".workingSet_id";
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String oldColumnName = "WorkingSet_id";
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String newColumnName = "DescriptiveDataSet_id";
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if ("WorkingSet_DescriptionBase".equals(oldTableName)){
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oldColumnName = "WorkingSets_id";
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newColumnName = "DescriptiveDataSets_id";
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}
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step = ColumnNameChanger.NewIntegerInstance(stepName, newTableName, oldColumnName, newColumnName, INCLUDE_AUDIT);
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stepList.add(step);
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}
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}
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@Override
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public ISchemaUpdater getNextUpdater() {
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return null;
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371
|
}
|
372
|
|
373
|
@Override
|
374
|
public ISchemaUpdater getPreviousUpdater() {
|
375
|
return SchemaUpdater_41_47.NewInstance();
|
376
|
}
|
377
|
|
378
|
}
|