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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.reference;
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import java.beans.PropertyChangeEvent;
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import java.beans.PropertyChangeListener;
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import java.net.URI;
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import java.util.List;
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import javax.persistence.Column;
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import javax.persistence.Embedded;
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import javax.persistence.Entity;
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import javax.persistence.FetchType;
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import javax.persistence.Inheritance;
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import javax.persistence.InheritanceType;
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import javax.persistence.Lob;
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import javax.persistence.ManyToOne;
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import javax.persistence.Transient;
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import javax.validation.constraints.NotNull;
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import javax.validation.constraints.Pattern;
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlAttribute;
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import javax.xml.bind.annotation.XmlElement;
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import javax.xml.bind.annotation.XmlIDREF;
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import javax.xml.bind.annotation.XmlRootElement;
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import javax.xml.bind.annotation.XmlSchemaType;
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import javax.xml.bind.annotation.XmlType;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.hibernate.annotations.Cascade;
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import org.hibernate.annotations.CascadeType;
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import org.hibernate.annotations.Table;
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import org.hibernate.annotations.Type;
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import org.hibernate.envers.Audited;
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import org.hibernate.search.annotations.Analyze;
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import org.hibernate.search.annotations.Field;
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import org.hibernate.search.annotations.FieldBridge;
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import org.hibernate.search.annotations.IndexedEmbedded;
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import org.hibernate.validator.constraints.Length;
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import eu.etaxonomy.cdm.common.DOI;
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import eu.etaxonomy.cdm.hibernate.search.DoiBridge;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.strategy.cache.reference.ArticleDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.BookDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.GenericDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.INomenclaturalReferenceCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.IReferenceBaseCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.cache.reference.ReferenceDefaultCacheStrategy;
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import eu.etaxonomy.cdm.strategy.match.Match;
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import eu.etaxonomy.cdm.strategy.match.MatchMode;
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import eu.etaxonomy.cdm.strategy.merge.Merge;
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import eu.etaxonomy.cdm.strategy.merge.MergeMode;
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import eu.etaxonomy.cdm.strategy.parser.ParserProblem;
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import eu.etaxonomy.cdm.validation.Level2;
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import eu.etaxonomy.cdm.validation.annotation.InReference;
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import eu.etaxonomy.cdm.validation.annotation.NullOrNotEmpty;
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import eu.etaxonomy.cdm.validation.annotation.ReferenceCheck;
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/**
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* The upmost (abstract) class for references (information sources).
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* <P>
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* This class corresponds to: <ul>
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* <li> PublicationCitation according to the TDWG ontology
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* <li> Publication according to the TCS
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* <li> Reference according to the ABCD schema
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* </ul>
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*
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* @author m.doering
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* @created 08-Nov-2007 13:06:47
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*/
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@XmlAccessorType(XmlAccessType.FIELD)
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@XmlType(name = "Reference", propOrder = {
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"type",
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"uri",
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"abbrevTitleCache",
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"protectedAbbrevTitleCache",
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"nomenclaturallyRelevant",
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"authorship",
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"referenceAbstract",
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"title",
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"abbrevTitle",
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"editor",
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"volume",
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"pages",
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"edition",
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"isbn",
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"issn",
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"doi",
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"seriesPart",
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"datePublished",
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"publisher",
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"placePublished",
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"institution",
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"school",
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"organization",
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"inReference"
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})
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@XmlRootElement(name = "Reference")
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@Entity
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@Inheritance(strategy=InheritanceType.SINGLE_TABLE)
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@Audited
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@Table(appliesTo="Reference", indexes = { @org.hibernate.annotations.Index(name = "ReferenceTitleCacheIndex", columnNames = { "titleCache" }) })
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@InReference(groups = Level2.class)
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@ReferenceCheck(groups = Level2.class)
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public class Reference<S extends IReferenceBaseCacheStrategy> extends IdentifiableMediaEntity<S> implements INomenclaturalReference, IArticle, IBook, IPatent, IDatabase, IJournal, IBookSection,ICdDvd,IGeneric,IInProceedings, IProceedings, IPrintSeries, IReport, IThesis,IWebPage, IPersonalCommunication, IReference, Cloneable {
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private static final long serialVersionUID = -2034764545042691295L;
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private static final Logger logger = Logger.getLogger(Reference.class);
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@XmlAttribute(name ="type")
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@Column(name="refType")
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@NotNull
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@Type(type = "eu.etaxonomy.cdm.hibernate.EnumUserType",
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parameters = {@org.hibernate.annotations.Parameter(name = "enumClass", value = "eu.etaxonomy.cdm.model.reference.ReferenceType")}
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)
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protected ReferenceType type;
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//Title of the reference
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@XmlElement(name ="Title" )
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@Column(length=4096, name="title")
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@Lob
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@Field
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@Match(MatchMode.EQUAL_REQUIRED)
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 4096) //TODO is the length attribute really required twice (see @Column)??
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private String title;
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//Title of the reference
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@XmlElement(name ="AbbrevTitle" )
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@Field
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@Match(MatchMode.EQUAL) //TODO check if this is correct
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@NullOrNotEmpty
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@Length(max = 255)
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private String abbrevTitle;
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//Title of the reference
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@XmlElement(name ="AbbrevTitleCache" )
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@Field
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@Match(MatchMode.CACHE)
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//TODO Val #3379
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// @NotNull
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@Length(max = 1024)
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private String abbrevTitleCache;
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@XmlElement(name = "protectedAbbrevTitleCache")
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@Merge(MergeMode.OR)
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private boolean protectedAbbrevTitleCache;
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//********************************************************/
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@XmlElement(name = "Editor")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String editor;
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@XmlElement(name = "Volume")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String volume;
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@XmlElement(name = "Pages")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String pages;
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@XmlElement(name = "Edition")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String edition;
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@XmlElement(name = "ISBN")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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@Pattern(regexp = "(?=.{13}$)\\d{1,5}([- ])\\d{1,7}\\1\\d{1,6}\\1(\\d|X)$", groups = Level2.class, message = "{eu.etaxonomy.cdm.model.reference.Reference.isbn.message}")
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protected String isbn;
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@XmlElement(name = "Doi")
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@Field
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@FieldBridge(impl = DoiBridge.class)
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@Type(type="doiUserType")
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@Column(length=DOI.MAX_LENGTH)
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protected DOI doi;
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@XmlElement(name = "ISSN")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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@Pattern(regexp = "(?=.{9}$)\\d{4}([- ])\\d{4} (\\d|X)$", groups = Level2.class, message = "{eu.etaxonomy.cdm.model.reference.Reference.issn.message}")
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protected String issn;
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@XmlElement(name = "SeriesPart")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String seriesPart;
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@XmlElement(name = "Organization")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String organization;
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@XmlElement(name = "Publisher")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String publisher;
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@XmlElement(name = "PlacePublished")
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 255)
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protected String placePublished;
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@XmlElement(name = "Institution")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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@ManyToOne(fetch = FetchType.LAZY)
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@IndexedEmbedded
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@Cascade(CascadeType.SAVE_UPDATE)
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protected Institution institution;
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@XmlElement(name = "School")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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@ManyToOne(fetch = FetchType.LAZY)
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@IndexedEmbedded
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@Cascade(CascadeType.SAVE_UPDATE)
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protected Institution school;
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@XmlElement(name = "InReference")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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@ManyToOne(fetch = FetchType.LAZY)
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// @IndexedEmbedded
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@Cascade(CascadeType.SAVE_UPDATE)
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// @InReference(groups=Level2.class)
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protected Reference<?> inReference;
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// @XmlElement(name = "FullReference")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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// @ManyToOne(fetch = FetchType.LAZY)
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//// @IndexedEmbedded
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// @Cascade(CascadeType.SAVE_UPDATE)
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// protected Reference fullReference;
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//
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// @XmlElement(name = "AbbreviatedReference")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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// @ManyToOne(fetch = FetchType.LAZY)
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//// @IndexedEmbedded
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// @Cascade(CascadeType.SAVE_UPDATE)
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// protected Reference abbreviatedReference;
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//********************************************************/
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//The date range assigned to the reference. ISO Date range like. Flexible, year can be left out, etc
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@XmlElement(name ="DatePublished" )
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@Embedded
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@IndexedEmbedded
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private TimePeriod datePublished = TimePeriod.NewInstance();
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@XmlElement(name ="Abstract" )
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@Column(length=65536, name="referenceAbstract")
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@Lob
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@Field
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//TODO Val #3379
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// @NullOrNotEmpty
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@Length(max = 65536)
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private String referenceAbstract; //abstract is a reserved term in Java
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//URIs like DOIs, LSIDs or Handles for this reference
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@XmlElement(name = "URI")
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@Field(analyze = Analyze.NO)
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@Type(type="uriUserType")
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private URI uri;
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//flag to subselect only references that could be useful for nomenclatural citations. If a reference is used as a
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//nomenclatural reference in a name this flag should be automatically set
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@XmlElement(name = "IsNomenclaturallyRelevant")
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@Merge(MergeMode.OR)
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private boolean nomenclaturallyRelevant;
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@XmlElement(name = "Authorship")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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@ManyToOne(fetch = FetchType.LAZY)
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@IndexedEmbedded
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@Cascade(CascadeType.SAVE_UPDATE)
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private TeamOrPersonBase<?> authorship;
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// @XmlElement(name = "ReferenceIdentity")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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// @ManyToOne(fetch = FetchType.LAZY)
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// //@IndexedEmbedded
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// @Cascade(CascadeType.SAVE_UPDATE)
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// @Transient
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// private ReferenceIdentity referenceIdentity;
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@XmlAttribute
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@Match(MatchMode.IGNORE)
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private int parsingProblem = 0;
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@XmlAttribute
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@Match(MatchMode.IGNORE)
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private int problemStarts = -1;
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@XmlAttribute
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@Match(MatchMode.IGNORE)
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private int problemEnds = -1;
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@Transient
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@XmlAttribute
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@Match(MatchMode.IGNORE)
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private boolean cacheStrategyRectified = false;
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protected Reference(){
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this(ReferenceType.Generic); //just in case someone uses constructor
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}
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protected Reference(ReferenceType type) {
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this.type = type;
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}
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@Override
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protected void initListener(){
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PropertyChangeListener listener = new PropertyChangeListener() {
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@Override
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public void propertyChange(PropertyChangeEvent ev) {
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if (!ev.getPropertyName().equals("titleCache") && !ev.getPropertyName().equals("abbrevTitleCache") && !ev.getPropertyName().equals("cacheStrategy")){
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if (! isProtectedTitleCache()){
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titleCache = null;
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}
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if (! isProtectedAbbrevTitleCache()){
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abbrevTitleCache = null;
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}
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}
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}
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};
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addPropertyChangeListener(listener);
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}
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//*************************** GETTER / SETTER ******************************************/
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@Override
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public String getAbbrevTitleCache() {
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if (protectedAbbrevTitleCache){
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return this.abbrevTitleCache;
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}
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// is title dirty, i.e. equal NULL?
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if (abbrevTitleCache == null){
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this.abbrevTitleCache = generateAbbrevTitle();
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this.abbrevTitleCache = getTruncatedCache(this.abbrevTitleCache) ;
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}
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return abbrevTitleCache;
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}
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@Override
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@Deprecated
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public void setAbbrevTitleCache(String abbrevTitleCache) {
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this.abbrevTitleCache = abbrevTitleCache;
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}
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@Override
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public void setAbbrevTitleCache(String abbrevTitleCache, boolean isProtected) {
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this.protectedAbbrevTitleCache = isProtected;
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setAbbrevTitleCache(abbrevTitleCache);
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}
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@Override
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public boolean isProtectedAbbrevTitleCache() {
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return protectedAbbrevTitleCache;
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}
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@Override
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public void setProtectedAbbrevTitleCache(boolean protectedAbbrevTitleCache) {
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this.protectedAbbrevTitleCache = protectedAbbrevTitleCache;
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}
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@Override
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public String getAbbrevTitle() {
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return abbrevTitle;
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}
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@Override
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public void setAbbrevTitle(String abbrevTitle) {
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this.abbrevTitle = abbrevTitle;
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}
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@Override
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public String getEditor() {
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return editor;
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}
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@Override
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public void setEditor(String editor) {
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this.editor = editor;
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}
|
443
|
|
444
|
// @Override
|
445
|
// public String getSeries() {
|
446
|
// return series;
|
447
|
// }
|
448
|
//
|
449
|
// @Override
|
450
|
// public void setSeries(String series) {
|
451
|
// this.series = series;
|
452
|
// }
|
453
|
|
454
|
@Override
|
455
|
public String getVolume() {
|
456
|
return volume;
|
457
|
}
|
458
|
|
459
|
@Override
|
460
|
public void setVolume(String volume) {
|
461
|
this.volume = volume;
|
462
|
}
|
463
|
|
464
|
@Override
|
465
|
public String getPages() {
|
466
|
return pages;
|
467
|
}
|
468
|
|
469
|
@Override
|
470
|
public void setPages(String pages) {
|
471
|
this.pages = pages;
|
472
|
}
|
473
|
|
474
|
@Override
|
475
|
public String getEdition() {
|
476
|
return edition;
|
477
|
}
|
478
|
|
479
|
@Override
|
480
|
public void setEdition(String edition) {
|
481
|
this.edition = edition;
|
482
|
}
|
483
|
|
484
|
@Override
|
485
|
public String getIsbn() {
|
486
|
return isbn;
|
487
|
}
|
488
|
|
489
|
@Override
|
490
|
public void setIsbn(String isbn) {
|
491
|
this.isbn = isbn;
|
492
|
}
|
493
|
|
494
|
@Override
|
495
|
public String getIssn() {
|
496
|
return issn;
|
497
|
}
|
498
|
|
499
|
@Override
|
500
|
public void setIssn(String issn) {
|
501
|
this.issn = issn;
|
502
|
}
|
503
|
|
504
|
@Override
|
505
|
public DOI getDoi() {
|
506
|
return doi;
|
507
|
}
|
508
|
|
509
|
@Override
|
510
|
public void setDoi(DOI doi) {
|
511
|
this.doi = doi;
|
512
|
}
|
513
|
|
514
|
@Override
|
515
|
public String getSeriesPart() {
|
516
|
return seriesPart;
|
517
|
}
|
518
|
|
519
|
@Override
|
520
|
public void setSeriesPart(String seriesPart) {
|
521
|
this.seriesPart = seriesPart;
|
522
|
}
|
523
|
|
524
|
@Override
|
525
|
public String getOrganization() {
|
526
|
return organization;
|
527
|
}
|
528
|
|
529
|
@Override
|
530
|
public void setOrganization(String organization) {
|
531
|
this.organization = organization;
|
532
|
}
|
533
|
|
534
|
@Override
|
535
|
public String getPublisher() {
|
536
|
return publisher;
|
537
|
}
|
538
|
|
539
|
@Override
|
540
|
public void setPublisher(String publisher) {
|
541
|
this.publisher = publisher;
|
542
|
}
|
543
|
|
544
|
@Override
|
545
|
public void setPublisher(String publisher, String placePublished){
|
546
|
this.publisher = publisher;
|
547
|
this.placePublished = placePublished;
|
548
|
}
|
549
|
|
550
|
@Override
|
551
|
public String getPlacePublished() {
|
552
|
return placePublished;
|
553
|
}
|
554
|
|
555
|
@Override
|
556
|
public void setPlacePublished(String placePublished) {
|
557
|
this.placePublished = placePublished;
|
558
|
}
|
559
|
|
560
|
@Override
|
561
|
public Institution getInstitution() {
|
562
|
return institution;
|
563
|
}
|
564
|
|
565
|
@Override
|
566
|
public void setInstitution(Institution institution) {
|
567
|
this.institution = institution;
|
568
|
}
|
569
|
|
570
|
@Override
|
571
|
public Institution getSchool() {
|
572
|
return school;
|
573
|
}
|
574
|
|
575
|
@Override
|
576
|
public void setSchool(Institution school) {
|
577
|
this.school = school;
|
578
|
}
|
579
|
|
580
|
@Override
|
581
|
public Reference getInReference() {
|
582
|
return inReference;
|
583
|
}
|
584
|
|
585
|
@Override
|
586
|
public void setInReference(Reference inReference) {
|
587
|
this.inReference = inReference;
|
588
|
}
|
589
|
|
590
|
@Override
|
591
|
public void setType(ReferenceType type) {
|
592
|
this.setCacheStrategy(type.getCacheStrategy());
|
593
|
this.type = type;
|
594
|
}
|
595
|
|
596
|
/**
|
597
|
* @return the type
|
598
|
*/
|
599
|
@Override
|
600
|
public ReferenceType getType() {
|
601
|
return type;
|
602
|
}
|
603
|
|
604
|
/**
|
605
|
* Whether this reference is of the given type
|
606
|
*
|
607
|
* @param type
|
608
|
* @return
|
609
|
*/
|
610
|
@Override
|
611
|
public boolean isOfType(ReferenceType type){
|
612
|
return type == getType();
|
613
|
}
|
614
|
|
615
|
/**
|
616
|
* Returns a string representing the title of <i>this</i> reference. If a
|
617
|
* reference has different titles (for instance abbreviated and not
|
618
|
* abbreviated) then for each title a new instance must be created.
|
619
|
*
|
620
|
* @return the title string of <i>this</i> reference
|
621
|
* @see #getCitation()
|
622
|
*/
|
623
|
@Override
|
624
|
public String getTitle(){
|
625
|
return this.title;
|
626
|
}
|
627
|
/**
|
628
|
* @see #getTitle()
|
629
|
*/
|
630
|
@Override
|
631
|
public void setTitle(String title){
|
632
|
this.title = title;
|
633
|
}
|
634
|
|
635
|
/**
|
636
|
* Returns the date (mostly only the year) of publication / creation of
|
637
|
* <i>this</i> reference.
|
638
|
*/
|
639
|
@Override
|
640
|
public TimePeriod getDatePublished(){
|
641
|
return this.datePublished;
|
642
|
}
|
643
|
/**
|
644
|
* @see #getDatePublished()
|
645
|
*/
|
646
|
@Override
|
647
|
public void setDatePublished(TimePeriod datePublished){
|
648
|
this.datePublished = datePublished;
|
649
|
}
|
650
|
|
651
|
public boolean hasDatePublished(){
|
652
|
boolean result = ! ( (this.datePublished == null) || StringUtils.isBlank(datePublished.toString()));
|
653
|
return result;
|
654
|
}
|
655
|
|
656
|
/**
|
657
|
* Returns the {@link eu.etaxonomy.cdm.model.agent.TeamOrPersonBase author (team)} who created the
|
658
|
* content of <i>this</i> reference.
|
659
|
*
|
660
|
* @return the author (team) of <i>this</i> reference
|
661
|
* @see eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
|
662
|
*/
|
663
|
@Override
|
664
|
public TeamOrPersonBase getAuthorship(){
|
665
|
return this.authorship;
|
666
|
}
|
667
|
|
668
|
/**
|
669
|
* @see #getAuthorship()
|
670
|
*/
|
671
|
@Override
|
672
|
public void setAuthorship(TeamOrPersonBase authorship){
|
673
|
this.authorship = authorship;
|
674
|
}
|
675
|
|
676
|
/**
|
677
|
* Returns the Uniform Resource Identifier (URI) corresponding to <i>this</i>
|
678
|
* reference. An URI is a string of characters used to identify a resource
|
679
|
* on the Internet.
|
680
|
*
|
681
|
* @return the URI of <i>this</i> reference
|
682
|
*/
|
683
|
@Override
|
684
|
public URI getUri(){
|
685
|
return this.uri;
|
686
|
}
|
687
|
/**
|
688
|
* @see #getUri()
|
689
|
*/
|
690
|
@Override
|
691
|
public void setUri(URI uri){
|
692
|
this.uri = uri;
|
693
|
}
|
694
|
|
695
|
/**
|
696
|
* @return the referenceAbstract
|
697
|
*/
|
698
|
@Override
|
699
|
public String getReferenceAbstract() {
|
700
|
return referenceAbstract;
|
701
|
}
|
702
|
|
703
|
/**
|
704
|
* @param referenceAbstract the referenceAbstract to set
|
705
|
*/
|
706
|
@Override
|
707
|
public void setReferenceAbstract(String referenceAbstract) {
|
708
|
this.referenceAbstract = referenceAbstract;
|
709
|
}
|
710
|
|
711
|
|
712
|
|
713
|
|
714
|
/**
|
715
|
* Returns "true" if the isNomenclaturallyRelevant flag is set. This
|
716
|
* indicates that a {@link TaxonNameBase taxon name} has been originally
|
717
|
* published in <i>this</i> reference following the rules of a
|
718
|
* {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode nomenclature code} and is therefore used for
|
719
|
* nomenclatural citations. This flag will be set as soon as <i>this</i>
|
720
|
* reference is used as a nomenclatural reference for any taxon name.<BR>
|
721
|
* FIXME what happens if the only taxon name referencing this reference is not
|
722
|
* any longer using this reference as a nomenclatural reference. How does the
|
723
|
* reference get informed about the fact that it is not nomenclaturally relevant
|
724
|
* anymore?
|
725
|
*/
|
726
|
public boolean isNomenclaturallyRelevant(){
|
727
|
return this.nomenclaturallyRelevant;
|
728
|
}
|
729
|
|
730
|
/**
|
731
|
* @see #isNomenclaturallyRelevant()
|
732
|
*/
|
733
|
public void setNomenclaturallyRelevant(boolean nomenclaturallyRelevant){
|
734
|
this.nomenclaturallyRelevant = nomenclaturallyRelevant;
|
735
|
}
|
736
|
|
737
|
|
738
|
// /**
|
739
|
// * Returns the full reference that belongs to this abbreviated reference. If this
|
740
|
// * reference is not abbreviated the full reference should be <code>null</code>.<BR>
|
741
|
// * A full reference should be added to a reference
|
742
|
// * which represents the abbreviated form of a reference. The full reference can be used
|
743
|
// * by publication tools to link to the unabbreviated and therefore more complete version
|
744
|
// * of the reference.
|
745
|
// *
|
746
|
// * @see #getAbbreviatedReference()
|
747
|
// * @return the full reference
|
748
|
// */
|
749
|
// public Reference getFullReference() {
|
750
|
// return fullReference;
|
751
|
// }
|
752
|
//
|
753
|
// /**
|
754
|
// * @see #getFullReference()
|
755
|
// * @param fullReference
|
756
|
// */
|
757
|
// public void setFullReference(Reference fullReference) {
|
758
|
// this.fullReference = fullReference;
|
759
|
// }
|
760
|
//
|
761
|
// /**
|
762
|
// * Returns the abbreviated reference that belongs to this full reference. If this
|
763
|
// * reference is not a full reference the abbeviated referece must be <code>null</code>.<BR>
|
764
|
// * An abbreviated reference should be added to a reference which represents the long (full)
|
765
|
// * form of a reference.
|
766
|
// * In future this may become a set or handled differently as there are multiple
|
767
|
// *
|
768
|
// * @see #getFullReference()
|
769
|
// * @return the full reference
|
770
|
// */
|
771
|
// public Reference getAbbreviatedReference() {
|
772
|
// return abbreviatedReference;
|
773
|
// }
|
774
|
//
|
775
|
// /**
|
776
|
// * @see #getAbbreviatedReference()
|
777
|
// * @param abbreviatedReference
|
778
|
// *
|
779
|
// */
|
780
|
// public void setAbbreviatedReference(Reference abbreviatedReference) {
|
781
|
// this.abbreviatedReference = abbreviatedReference;
|
782
|
// }
|
783
|
|
784
|
//**************************************************** /
|
785
|
|
786
|
// /**
|
787
|
// * Returns the string representing the name of the editor of <i>this</i>
|
788
|
// * generic reference. An editor is mostly a person (team) who assumed the
|
789
|
// * responsibility for the content of the publication as a whole without
|
790
|
// * being the author of this content.<BR>
|
791
|
// * If there is an editor then the generic reference must be some
|
792
|
// * kind of {@link PrintedUnitBase physical printed unit}.
|
793
|
// *
|
794
|
// * @return the string identifying the editor of <i>this</i>
|
795
|
// * generic reference
|
796
|
// * @see #getPublisher()
|
797
|
// */
|
798
|
// protected String getEditor(){
|
799
|
// return this.editor;
|
800
|
// }
|
801
|
//
|
802
|
// /**
|
803
|
// * @see #getEditor()
|
804
|
// */
|
805
|
// protected void setEditor(String editor){
|
806
|
// this.editor = editor;
|
807
|
// }
|
808
|
//
|
809
|
// /**
|
810
|
// * Returns the string representing the series (for instance for books or
|
811
|
// * within journals) - and series part - in which <i>this</i> generic reference
|
812
|
// * was published.<BR>
|
813
|
// * If there is a series then the generic reference must be some
|
814
|
// * kind of {@link PrintedUnitBase physical printed unit} or an {@link Article article}.
|
815
|
// *
|
816
|
// * @return the string identifying the series for <i>this</i>
|
817
|
// * generic reference
|
818
|
// */
|
819
|
// protected String getSeries(){
|
820
|
// return this.series;
|
821
|
// }
|
822
|
//
|
823
|
// /**
|
824
|
// * @see #getSeries()
|
825
|
// */
|
826
|
// protected void setSeries(String series){
|
827
|
// this.series = series;
|
828
|
// }
|
829
|
//
|
830
|
// /**
|
831
|
// * Returns the string representing the volume (for instance for books or
|
832
|
// * within journals) in which <i>this</i> generic reference was published.<BR>
|
833
|
// * If there is a volume then the generic reference must be some
|
834
|
// * kind of {@link PrintedUnitBase physical printed unit} or an {@link Article article}.
|
835
|
// *
|
836
|
// * @return the string identifying the volume for <i>this</i>
|
837
|
// * generic reference
|
838
|
// */
|
839
|
// protected String getVolume(){
|
840
|
// return this.volume;
|
841
|
// }
|
842
|
//
|
843
|
// /**
|
844
|
// * @see #getVolume()
|
845
|
// */
|
846
|
// protected void setVolume(String volume){
|
847
|
// this.volume = volume;
|
848
|
// }
|
849
|
//
|
850
|
// /**
|
851
|
// * Returns the string representing the page(s) where the content of
|
852
|
// * <i>this</i> generic reference is located.<BR>
|
853
|
// * If there is a pages information then the generic reference must be some
|
854
|
// * kind of {@link PrintedUnitBase physical printed unit} or an {@link Article article}.
|
855
|
// *
|
856
|
// * @return the string containing the pages corresponding to <i>this</i>
|
857
|
// * generic reference
|
858
|
// */
|
859
|
// protected String getPages(){
|
860
|
// return this.pages;
|
861
|
// }
|
862
|
//
|
863
|
// /**
|
864
|
// * @see #getPages()
|
865
|
// */
|
866
|
// protected void setPages(String pages){
|
867
|
// this.pages = pages;
|
868
|
// }
|
869
|
|
870
|
|
871
|
/**
|
872
|
* Returns a formatted string containing the entire reference citation,
|
873
|
* including authors, corresponding to <i>this</i> reference.
|
874
|
*
|
875
|
* @see #generateTitle()
|
876
|
*/
|
877
|
// TODO implement
|
878
|
@Transient
|
879
|
public String getCitation(){
|
880
|
rectifyCacheStrategy();
|
881
|
if (getCacheStrategy() == null){
|
882
|
logger.warn("No CacheStrategy defined for "+ this.getClass() + ": " + this.getUuid());
|
883
|
return null;
|
884
|
}else{
|
885
|
return getCacheStrategy().getTitleCache(this);
|
886
|
}
|
887
|
}
|
888
|
|
889
|
|
890
|
@Override
|
891
|
public String generateTitle() {
|
892
|
rectifyCacheStrategy();
|
893
|
return super.generateTitle();
|
894
|
}
|
895
|
|
896
|
public String generateAbbrevTitle() {
|
897
|
rectifyCacheStrategy(); //TODO needed, is called by getCacheStrategy already
|
898
|
return getCacheStrategy().getAbbrevTitleCache(this);
|
899
|
}
|
900
|
|
901
|
/**
|
902
|
* Returns a string representation for the year of publication / creation
|
903
|
* of <i>this</i> reference. If the {@link #getDatePublished() datePublished}
|
904
|
* of this reference contains more date information then (starting) year
|
905
|
* only the year is returned.
|
906
|
* than attribute.
|
907
|
*/
|
908
|
@Override
|
909
|
@Transient
|
910
|
public String getYear(){
|
911
|
TimePeriod datePublished = this.getDatePublished();
|
912
|
if (datePublished != null ){
|
913
|
String result = getDatePublished().getYear();
|
914
|
return result;
|
915
|
}else{
|
916
|
return null;
|
917
|
}
|
918
|
}
|
919
|
|
920
|
/**
|
921
|
* Convenience method that returns a string representation for the publication date / creation
|
922
|
* of <i>this</i> reference. The string is obtained by
|
923
|
* {@link #getDatePublished()#toString() the string representation
|
924
|
* of the date published}.
|
925
|
*/
|
926
|
@Transient
|
927
|
public String getDatePublishedString(){
|
928
|
TimePeriod datePublished = this.getDatePublished();
|
929
|
if (datePublished != null ){
|
930
|
return getDatePublished().toString();
|
931
|
}else{
|
932
|
return null;
|
933
|
}
|
934
|
}
|
935
|
|
936
|
|
937
|
@Override
|
938
|
public int getParsingProblem(){
|
939
|
return this.parsingProblem;
|
940
|
}
|
941
|
|
942
|
@Override
|
943
|
public void setParsingProblem(int parsingProblem){
|
944
|
this.parsingProblem = parsingProblem;
|
945
|
}
|
946
|
|
947
|
@Override
|
948
|
public boolean hasProblem(){
|
949
|
return parsingProblem != 0;
|
950
|
}
|
951
|
|
952
|
@Override
|
953
|
public boolean hasProblem(ParserProblem problem) {
|
954
|
return getParsingProblems().contains(problem);
|
955
|
}
|
956
|
|
957
|
@Override
|
958
|
public int getProblemStarts(){
|
959
|
return this.problemStarts;
|
960
|
}
|
961
|
|
962
|
@Override
|
963
|
public void setProblemStarts(int start) {
|
964
|
this.problemStarts = start;
|
965
|
}
|
966
|
|
967
|
@Override
|
968
|
public int getProblemEnds(){
|
969
|
return this.problemEnds;
|
970
|
}
|
971
|
|
972
|
@Override
|
973
|
public void setProblemEnds(int end) {
|
974
|
this.problemEnds = end;
|
975
|
}
|
976
|
|
977
|
@Override
|
978
|
public void addParsingProblem(ParserProblem warning){
|
979
|
parsingProblem = ParserProblem.addProblem(parsingProblem, warning);
|
980
|
}
|
981
|
|
982
|
@Override
|
983
|
public void removeParsingProblem(ParserProblem problem) {
|
984
|
parsingProblem = ParserProblem.removeProblem(parsingProblem, problem);
|
985
|
}
|
986
|
|
987
|
@Override
|
988
|
@Transient
|
989
|
public List<ParserProblem> getParsingProblems() {
|
990
|
return ParserProblem.warningList(this.parsingProblem);
|
991
|
}
|
992
|
|
993
|
|
994
|
@Override
|
995
|
@Transient
|
996
|
public String getNomenclaturalCitation(String microReference) {
|
997
|
rectifyCacheStrategy();
|
998
|
String typeName = this.getType()== null ? "(no type defined)" : this.getType().getMessage();
|
999
|
if (getCacheStrategy() == null){
|
1000
|
logger.warn("No CacheStrategy defined for "+ typeName + ": " + this.getUuid());
|
1001
|
return null;
|
1002
|
}else{
|
1003
|
if (getCacheStrategy() instanceof INomenclaturalReferenceCacheStrategy){
|
1004
|
return ((INomenclaturalReferenceCacheStrategy)cacheStrategy).getNomenclaturalCitation(this, microReference);
|
1005
|
}else {
|
1006
|
logger.warn("No INomenclaturalReferenceCacheStrategy defined for "+ typeName + ": " + this.getUuid());
|
1007
|
return null;
|
1008
|
}
|
1009
|
}
|
1010
|
}
|
1011
|
|
1012
|
|
1013
|
/**
|
1014
|
* Generates, according to the {@link eu.etaxonomy.cdm.strategy.strategy.cache.reference.IReferenceBaseCacheStrategy cache strategy}
|
1015
|
* assigned to <i>this</i> reference, a string that identifies <i>this</i>
|
1016
|
* reference and returns it. This string may be stored in the inherited
|
1017
|
* {@link eu.etaxonomy.cdm.model.common.IdentifiableEntity#getTitleCache() titleCache} attribute.<BR>
|
1018
|
* This method overrides the generic and inherited generateTitle method
|
1019
|
* from {@link eu.etaxonomy.cdm.model.common.IdentifiableEntity IdentifiableEntity}.
|
1020
|
*
|
1021
|
* @return the string identifying <i>this</i> reference
|
1022
|
* @see #getCitation()
|
1023
|
* @see eu.etaxonomy.cdm.model.common.IdentifiableEntity#getTitleCache()
|
1024
|
* @see eu.etaxonomy.cdm.model.common.IdentifiableEntity#generateTitle()
|
1025
|
* @see eu.etaxonomy.cdm.strategy.strategy.cache.common.IIdentifiableEntityCacheStrategy#getTitleCache()
|
1026
|
*/
|
1027
|
// @Override
|
1028
|
// public String generateTitle(){
|
1029
|
// if (cacheStrategy == null){
|
1030
|
// logger.warn("No CacheStrategy defined for Reference: " + this.getUuid());
|
1031
|
// return null;
|
1032
|
// }else{
|
1033
|
// return cacheStrategy.getTitleCache(this);
|
1034
|
// }
|
1035
|
// }
|
1036
|
|
1037
|
|
1038
|
|
1039
|
// /**
|
1040
|
// * Returns the reference identity object
|
1041
|
// * @return the referenceIdentity
|
1042
|
// */
|
1043
|
// public ReferenceIdentity getReferenceIdentity() {
|
1044
|
// return referenceIdentity;
|
1045
|
// }
|
1046
|
//
|
1047
|
// /**
|
1048
|
// * For bidirectional use only
|
1049
|
// * @param referenceIdentity the referenceIdentity to set
|
1050
|
// */
|
1051
|
// protected void setReferenceIdentity(ReferenceIdentity referenceIdentity) {
|
1052
|
// this.referenceIdentity = referenceIdentity;
|
1053
|
// }
|
1054
|
//
|
1055
|
// /**
|
1056
|
// * Returns the set of all identical references. Same as getReferenceIdentity().getReferences()
|
1057
|
// * @return
|
1058
|
// */
|
1059
|
// public Set<Reference> identicalReferences(){
|
1060
|
// return referenceIdentity.getReferences();
|
1061
|
// }
|
1062
|
|
1063
|
|
1064
|
//********** Casting methods ***********************************/
|
1065
|
|
1066
|
public IArticle castReferenceToArticle(){
|
1067
|
setType(ReferenceType.Article);
|
1068
|
return this;
|
1069
|
}
|
1070
|
|
1071
|
public IBook castReferenceToBook(){
|
1072
|
setType(ReferenceType.Book);
|
1073
|
return this;
|
1074
|
}
|
1075
|
|
1076
|
public IBookSection castReferenceToBookSection(){
|
1077
|
setType(ReferenceType.BookSection);
|
1078
|
return this;
|
1079
|
}
|
1080
|
|
1081
|
public ICdDvd castReferenceToCdDvd(){
|
1082
|
setType(ReferenceType.CdDvd);
|
1083
|
return this;
|
1084
|
}
|
1085
|
|
1086
|
public IDatabase castReferenceToDatabase(){
|
1087
|
setType(ReferenceType.Database);
|
1088
|
return this;
|
1089
|
}
|
1090
|
|
1091
|
public IGeneric castReferenceToGeneric(){
|
1092
|
setType(ReferenceType.Generic);
|
1093
|
return this;
|
1094
|
}
|
1095
|
|
1096
|
public IInProceedings castReferenceToInProceedings(){
|
1097
|
setType(ReferenceType.InProceedings);
|
1098
|
return this;
|
1099
|
}
|
1100
|
|
1101
|
public IJournal castReferenceToJournal(){
|
1102
|
setType(ReferenceType.Journal);
|
1103
|
return this;
|
1104
|
}
|
1105
|
|
1106
|
public IMap castReferenceToMap(){
|
1107
|
setType(ReferenceType.Map);
|
1108
|
return (IMap) this;
|
1109
|
}
|
1110
|
|
1111
|
public IPatent castReferenceToPatent(){
|
1112
|
setType(ReferenceType.Patent);
|
1113
|
return this;
|
1114
|
}
|
1115
|
|
1116
|
public IPersonalCommunication castReferenceToPersonalCommunication(){
|
1117
|
setType(ReferenceType.PersonalCommunication);
|
1118
|
return this;
|
1119
|
}
|
1120
|
|
1121
|
public IPrintSeries castReferenceToPrintSeries(){
|
1122
|
setType(ReferenceType.PrintSeries);
|
1123
|
return this;
|
1124
|
}
|
1125
|
|
1126
|
public IWebPage castReferenceToWebPage(){
|
1127
|
setType(ReferenceType.WebPage);
|
1128
|
return this;
|
1129
|
}
|
1130
|
|
1131
|
public IProceedings castReferenceToProceedings(){
|
1132
|
setType(ReferenceType.Proceedings);
|
1133
|
return this;
|
1134
|
}
|
1135
|
|
1136
|
public IReport castReferenceToReport(){
|
1137
|
setType(ReferenceType.Report);
|
1138
|
return this;
|
1139
|
}
|
1140
|
|
1141
|
public IThesis castReferenceToThesis(){
|
1142
|
setType(ReferenceType.Thesis);
|
1143
|
return this;
|
1144
|
}
|
1145
|
|
1146
|
|
1147
|
@Override
|
1148
|
@Transient // prevent from being serialized by webservice
|
1149
|
public IJournal getInJournal() {
|
1150
|
IJournal journal = this.inReference;
|
1151
|
return journal;
|
1152
|
}
|
1153
|
|
1154
|
@Override
|
1155
|
public void setInJournal(IJournal journal) {
|
1156
|
this.inReference = (Reference<JournalDefaultCacheStrategy>) journal;
|
1157
|
|
1158
|
}
|
1159
|
|
1160
|
@Override
|
1161
|
@Transient // prevent from being serialized by webservice
|
1162
|
public IPrintSeries getInSeries() {
|
1163
|
IPrintSeries printSeries = this.inReference;
|
1164
|
return printSeries;
|
1165
|
}
|
1166
|
|
1167
|
@Override
|
1168
|
public void setInSeries(IPrintSeries inSeries) {
|
1169
|
this.inReference = (Reference<IReferenceBaseCacheStrategy>) inSeries;
|
1170
|
}
|
1171
|
|
1172
|
@Override
|
1173
|
@Transient // prevent from being serialized by webservice
|
1174
|
public IBook getInBook() {
|
1175
|
IBook book = this.inReference;
|
1176
|
return book;
|
1177
|
}
|
1178
|
|
1179
|
//********************** In-References *****************************************
|
1180
|
|
1181
|
@Override
|
1182
|
public void setInBook(IBook book) {
|
1183
|
this.inReference = (Reference<BookDefaultCacheStrategy>) book;
|
1184
|
}
|
1185
|
|
1186
|
@Override
|
1187
|
@Transient // prevent from being serialized by webservice
|
1188
|
public IProceedings getInProceedings() {
|
1189
|
IProceedings proceedings = this.inReference;
|
1190
|
return proceedings;
|
1191
|
}
|
1192
|
|
1193
|
@Override
|
1194
|
public void setInProceedings(IProceedings proceeding) {
|
1195
|
this.inReference = (Reference<BookDefaultCacheStrategy>) proceeding;
|
1196
|
}
|
1197
|
|
1198
|
//*************************** CACHE STRATEGIES ******************************/
|
1199
|
|
1200
|
public S getCacheStrategy() {
|
1201
|
rectifyCacheStrategy();
|
1202
|
return this.cacheStrategy;
|
1203
|
}
|
1204
|
|
1205
|
/**
|
1206
|
* The type property of this class is mapped on the field level to the data base column, so
|
1207
|
* Hibernate will consequently use the {@link org.hibernate.property.DirectPropertyAccessor}
|
1208
|
* to set the property. This PropertyAccessor directly sets the field instead of using the according setter so
|
1209
|
* the CacheStrategy is not correctly set after the initialization of the bean. Thus we need to
|
1210
|
* validate the CacheStrategy before it is to be used.
|
1211
|
*/
|
1212
|
private void rectifyCacheStrategy() {
|
1213
|
if(!cacheStrategyRectified ){
|
1214
|
setType(getType());
|
1215
|
cacheStrategyRectified = true;
|
1216
|
}
|
1217
|
}
|
1218
|
|
1219
|
|
1220
|
//public void setCacheStrategy(S cacheStrategy){
|
1221
|
// this.cacheStrategy = cacheStrategy;
|
1222
|
//}
|
1223
|
|
1224
|
@Override
|
1225
|
public void setCacheStrategy(IReferenceBaseCacheStrategy iReferenceBaseCacheStrategy) {
|
1226
|
this.cacheStrategy = (S) iReferenceBaseCacheStrategy;
|
1227
|
|
1228
|
}
|
1229
|
|
1230
|
@Override
|
1231
|
public void setCacheStrategy(ArticleDefaultCacheStrategy cacheStrategy) {
|
1232
|
this.cacheStrategy = (S) cacheStrategy;
|
1233
|
}
|
1234
|
|
1235
|
@Override
|
1236
|
public void setCacheStrategy(BookDefaultCacheStrategy cacheStrategy) {
|
1237
|
this.cacheStrategy = (S) cacheStrategy;
|
1238
|
}
|
1239
|
|
1240
|
@Override
|
1241
|
public void setCacheStrategy(JournalDefaultCacheStrategy cacheStrategy) {
|
1242
|
this.cacheStrategy = (S) cacheStrategy;
|
1243
|
}
|
1244
|
|
1245
|
@Override
|
1246
|
public void setCacheStrategy(BookSectionDefaultCacheStrategy cacheStrategy) {
|
1247
|
this.cacheStrategy = (S) cacheStrategy;
|
1248
|
}
|
1249
|
|
1250
|
@Override
|
1251
|
public void setCacheStrategy(GenericDefaultCacheStrategy cacheStrategy) {
|
1252
|
this.cacheStrategy = (S) cacheStrategy;
|
1253
|
}
|
1254
|
|
1255
|
public void setCacheStrategy(ReferenceDefaultCacheStrategy cacheStrategy) {
|
1256
|
this.cacheStrategy = (S)cacheStrategy;
|
1257
|
|
1258
|
}
|
1259
|
|
1260
|
|
1261
|
|
1262
|
// @Override
|
1263
|
// protected void initListener(){
|
1264
|
// PropertyChangeListener listener = new PropertyChangeListener() {
|
1265
|
// @Override
|
1266
|
// public void propertyChange(PropertyChangeEvent e) {
|
1267
|
// boolean protectedByLowerCache = false;
|
1268
|
// //authorship cache
|
1269
|
// if (fieldHasCacheUpdateProperty(e.getPropertyName(), "authorshipCache")){
|
1270
|
// if (protectedAuthorshipCache){
|
1271
|
// protectedByLowerCache = true;
|
1272
|
// }else{
|
1273
|
// authorshipCache = null;
|
1274
|
// }
|
1275
|
// }
|
1276
|
//
|
1277
|
// //title cache
|
1278
|
// if (! fieldHasNoUpdateProperty(e.getPropertyName(), "titleCache")){
|
1279
|
// if (isProtectedTitleCache()|| protectedByLowerCache == true ){
|
1280
|
// protectedByLowerCache = true;
|
1281
|
// }else{
|
1282
|
// titleCache = null;
|
1283
|
// }
|
1284
|
// }
|
1285
|
// //full title cache
|
1286
|
// if (! fieldHasNoUpdateProperty(e.getPropertyName(), "fullTitleCache")){
|
1287
|
// if (isProtectedFullTitleCache()|| protectedByLowerCache == true ){
|
1288
|
// protectedByLowerCache = true;
|
1289
|
// }else{
|
1290
|
// fullTitleCache = null;
|
1291
|
// }
|
1292
|
// }
|
1293
|
// }
|
1294
|
// };
|
1295
|
// addPropertyChangeListener(listener); //didn't use this.addXXX to make lsid.AssemblerTest run in cdmlib-remote
|
1296
|
// }
|
1297
|
|
1298
|
|
1299
|
//*********************** CLONE ********************************************************/
|
1300
|
|
1301
|
/**
|
1302
|
* Clones <i>this</i> reference. This is a shortcut that enables to create
|
1303
|
* a new instance that differs only slightly from <i>this</i> reference by
|
1304
|
* modifying only some of the attributes.
|
1305
|
*
|
1306
|
* @see eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity#clone()
|
1307
|
* @see java.lang.Object#clone()
|
1308
|
*/
|
1309
|
@Override
|
1310
|
public Object clone() {
|
1311
|
try {
|
1312
|
Reference<?> result = (Reference<?>)super.clone();
|
1313
|
result.setDatePublished(datePublished != null? (TimePeriod)datePublished.clone(): null);
|
1314
|
//no changes to: title, authorship, hasProblem, nomenclaturallyRelevant, uri
|
1315
|
return result;
|
1316
|
} catch (CloneNotSupportedException e) {
|
1317
|
logger.warn("Object does not implement cloneable");
|
1318
|
e.printStackTrace();
|
1319
|
return null;
|
1320
|
}
|
1321
|
}
|
1322
|
|
1323
|
//******************************* toString *****************************/
|
1324
|
|
1325
|
@Override
|
1326
|
public String toString() {
|
1327
|
if (type != null){
|
1328
|
String result = "Reference [type=" + type + ", id= " + this.getId() + ", uuid=" + this.uuid ;
|
1329
|
result += title == null ? "" : ", title=" + title;
|
1330
|
result += abbrevTitle == null ? "" : ", abbrevTitle=" + abbrevTitle;
|
1331
|
result += "]";
|
1332
|
return result;
|
1333
|
}else{
|
1334
|
return super.toString();
|
1335
|
}
|
1336
|
}
|
1337
|
|
1338
|
|
1339
|
|
1340
|
|
1341
|
}
|
1342
|
|