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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.match;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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/**
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* @author a.mueller
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* @since 17.10.2018
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*/
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public class MatchStrategyFactory {
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public static IMatchStrategyEqual NewDefaultInstance(Class<? extends IMatchable> matchClass){
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return new DefaultMatchStrategy(matchClass);
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}
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public static IParsedMatchStrategy NewParsedInstance(Class<? extends IMatchable> matchClass){
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IParsedMatchStrategy parsedMatchStrategy = new ParsedBaseMatchStrategy(matchClass);
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return parsedMatchStrategy;
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}
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public static IParsedMatchStrategy NewParsedPersonInstance(){
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try {
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IParsedMatchStrategy parsedPersonMatchStrategy = NewParsedInstance(Person.class);
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addParsedAgentBaseMatchModes(parsedPersonMatchStrategy);
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//FIXME adapt for for inRef authors
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parsedPersonMatchStrategy.setMatchMode("nomenclaturalTitle", MatchMode.EQUAL);
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//FIXME adapt for inRef authors
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parsedPersonMatchStrategy.setMatchMode("familyName", MatchMode.EQUAL_OR_FIRST_NULL);
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//TODO lifespan may implement MATCH_OR_ONE_NULL
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String[] equalOrNullParams = new String[]{"collectorTitle","givenName","initials",
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"lifespan","orcid","prefix","suffix"};
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for(String param : equalOrNullParams){
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parsedPersonMatchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
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}
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String[] ignoreParams = new String[]{"institutionalMemberships"};
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for(String param : ignoreParams){
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parsedPersonMatchStrategy.setMatchMode(param, MatchMode.IGNORE);
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}
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return parsedPersonMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed person match strategy.", e);
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}
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}
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public static IParsedMatchStrategy NewParsedTeamInstance(){
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IParsedMatchStrategy parsedTeamMatchStrategy = NewParsedInstance(Team.class);
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try {
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addParsedAgentBaseMatchModes(parsedTeamMatchStrategy);
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parsedTeamMatchStrategy.setMatchMode("teamMembers", MatchMode.MATCH, NewParsedPersonInstance());
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parsedTeamMatchStrategy.setMatchMode("hasMoreMembers", MatchMode.EQUAL);
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parsedTeamMatchStrategy.setMatchMode("protectedCollectorTitleCache", MatchMode.EQUAL_OR_FIRST_NULL);
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parsedTeamMatchStrategy.setMatchMode("protectedNomenclaturalTitleCache", MatchMode.EQUAL);
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String[] equalOrNullParams = new String[]{};
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for(String param : equalOrNullParams){
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parsedTeamMatchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
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}
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String[] ignoreParams = new String[]{};
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for(String param : ignoreParams){
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parsedTeamMatchStrategy.setMatchMode(param, MatchMode.IGNORE);
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}
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return parsedTeamMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed team match strategy.", e);
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}
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}
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public static IParsedMatchStrategy NewParsedTeamOrPersonInstance(){
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@SuppressWarnings("rawtypes")
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SubClassMatchStrategy<TeamOrPersonBase> parsedAuthorMatchStrategy = SubClassMatchStrategy.NewInstance(TeamOrPersonBase.class);
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try {
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parsedAuthorMatchStrategy.putStrategy(Person.class, NewParsedPersonInstance());
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parsedAuthorMatchStrategy.putStrategy(Team.class, NewParsedTeamInstance());
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return parsedAuthorMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed author match strategy.", e);
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}
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}
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public static IParsedMatchStrategy NewParsedBookInstance(){
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try {
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IParsedMatchStrategy parsedBookMatchStrategy = NewParsedInstance(Reference.class);
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addParsedReferenceMatchModes(parsedBookMatchStrategy);
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//author (as it should always be known for a parsed book)
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parsedBookMatchStrategy.setMatchMode("authorship", MatchMode.MATCH_REQUIRED, NewParsedTeamOrPersonInstance());
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//in-reference , parsed book has no in-Reference
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parsedBookMatchStrategy.setMatchMode("inReference", MatchMode.EQUAL_OR_FIRST_NULL);
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parsedBookMatchStrategy.setMatchMode("title", MatchMode.EQUAL_OR_FIRST_NULL); //not available in parsed book
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parsedBookMatchStrategy.setMatchMode("abbrevTitle", MatchMode.EQUAL_REQUIRED);
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//TODO caches
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return parsedBookMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed team match strategy.", e);
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}
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}
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/**
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* As the book section is not clearly defined if parsed (usually only the author and publication date is known),
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* it can only match exactly. If pages, title, abbrevTitle are known for the more complete references
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* it will match only if they are also known for the parsed instance.
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*/
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public static IParsedMatchStrategy NewParsedBookSectionInstance(){
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try {
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IParsedMatchStrategy parsedBookSectionMatchStrategy = (IParsedMatchStrategy)NewDefaultInstance(Reference.class);
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addParsedSectionReferenceMatchModes(parsedBookSectionMatchStrategy);
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//author (or either title or authorship match, but usually only authorship is known for parsed instances)
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parsedBookSectionMatchStrategy.setMatchMode("authorship", MatchMode.MATCH_REQUIRED, NewParsedTeamOrPersonInstance());
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//in-reference
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parsedBookSectionMatchStrategy.setMatchMode("inReference", MatchMode.MATCH_REQUIRED, NewParsedBookInstance());
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//see comment on title and abbrevTitle in #NewParsedArticleInstance
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parsedBookSectionMatchStrategy.setMatchMode("title", MatchMode.EQUAL);
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parsedBookSectionMatchStrategy.setMatchMode("abbrevTitle", MatchMode.EQUAL);
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//TODO caches
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return parsedBookSectionMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed team match strategy.", e);
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}
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}
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public static IParsedMatchStrategy NewParsedArticleInstance(){ //or should it better be Section (in Journal)
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try {
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IParsedMatchStrategy articleMatchStrategy = (IParsedMatchStrategy)NewDefaultInstance(Reference.class);
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addParsedSectionReferenceMatchModes(articleMatchStrategy);
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//if a title or abbrevTitle exists for the existing (first) article
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//we can not guarantee that the article is really the one that is
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//meant in the context, there could be other articles with the same
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//author.
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//Having a soft matching for possible candidates may solve this issue.
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//Also comparing the detail (page) with a filled field "pages" may solve
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//it in many cases.
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//However, we need to accept that articles as nomenclatural references are not
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//clearly enough defined so exact matching with rich data is not possible at
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//this point
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//TODO improvement, check page number
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articleMatchStrategy.setMatchMode("title", MatchMode.EQUAL);
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articleMatchStrategy.setMatchMode("abbrevTitle", MatchMode.EQUAL);
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articleMatchStrategy.setMatchMode("authorship", MatchMode.MATCH_REQUIRED, NewParsedTeamOrPersonInstance());
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articleMatchStrategy.setMatchMode("inReference", MatchMode.MATCH, NewParsedJournalInstance());
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//TODO caches
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return articleMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Problems when creating parsed article match strategy.");
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}
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}
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/**
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* Adds all typical parsed reference match modes which are equal for non section references
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* (journal, book, (generic(?))).
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* The following fields need to be handled explicitly by each calling method:<BR>
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*
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* <LI>authorship</LI>
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* <LI>title</LI>
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* <LI>abbrevTitle</LI>
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* <LI>titleCache</LI>
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* <LI>abbrevTitleCache</LI>
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* <LI>protectedTitleCache</LI>
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* <LI>protectedAbbrevTitleCache</LI>
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* <LI>inReference</LI>
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*
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* @see #addParsedSectionReferenceMatchModes(IParsedMatchStrategy)
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* @param referenceMatchStrategy the strategy to fill
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* @throws MatchException
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*/
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private static void addParsedReferenceMatchModes(IParsedMatchStrategy referenceMatchStrategy) throws MatchException {
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//"placePublished" should be MatchMode.EQUAL if parser parses place published
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//TODO datePublished could also be more detailed in first then in second, e.g. Apr 2008 <-> 2008,
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//something like MatchMode.IncludedIn is needed here
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//TODO externally managed
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addParsedIdentifiableEntityModes(referenceMatchStrategy);
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String[] equalOrNullParams = new String[]{"accessed","doi",
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"institution","isbn","issn","organization",
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"pages","publisher","placePublished",
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"referenceAbstract","school","uri"};
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for(String param : equalOrNullParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
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}
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String[] equalParams = new String[]{"datePublished","edition",
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"editor","seriesPart","volume"};
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for(String param : equalParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.EQUAL);
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}
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String[] matchOrNullParams = new String[]{"institution"};
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for(String param : matchOrNullParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.MATCH_OR_FIRST_NULL);
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}
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}
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/**
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* Adds all typical parsed reference match modes which are equal for section references
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* (article, book section).
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* The following fields need to be handled explicitly by each calling method:<BR>
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*
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* For further information see: #9157
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*
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* <LI>authorship</LI>
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* <LI>title</LI>
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* <LI>abbrevTitle</LI>
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* <LI>titleCache</LI>
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* <LI>abbrevTitleCache</LI>
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* <LI>protectedTitleCache</LI>
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* <LI>protectedAbbrevTitleCache</LI>
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* <LI>inReference</LI>
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*
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* @see #addParsedReferenceMatchModes(IParsedMatchStrategy)
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* @param referenceMatchStrategy the strategy to fill
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* @throws MatchException
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*/
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private static void addParsedSectionReferenceMatchModes(IParsedMatchStrategy referenceMatchStrategy) throws MatchException {
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//"placePublished" should be MatchMode.EQUAL if parser parses place published
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//TODO datePublished could also be more detailed in first then in second, e.g. Apr 2008 <-> 2008,
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//something like MatchMode.IncludedIn is needed here
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//TODO pages if a page number is given the parsed reference may not be unidentified anymore
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//TODO externally managed
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addParsedIdentifiableEntityModes(referenceMatchStrategy);
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//here the result differs from addParsedReferenceMatchModes
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String[] equalOrNullParams = new String[]{"accessed","doi",
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"institution","isbn","issn","organization",
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"pages","publisher","placePublished",
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"referenceAbstract","school","uri"};
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for(String param : equalOrNullParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.EQUAL); //EQUAL !!
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}
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String[] equalParams = new String[]{"datePublished","edition",
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"editor","seriesPart","volume"};
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for(String param : equalParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.EQUAL);
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}
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String[] matchOrNullParams = new String[]{"institution"};
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for(String param : matchOrNullParams){
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referenceMatchStrategy.setMatchMode(param, MatchMode.MATCH); //MATCH!!
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}
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}
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private static void addParsedAgentBaseMatchModes(IParsedMatchStrategy matchStrategy) throws MatchException {
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addParsedIdentifiableEntityModes(matchStrategy);
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//TODO contact does not yet works, also not with EQUAL_OR_ONE_NULL, leads to agent.id=? or agent.id is null query
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//better should be even handled with MATCH.Equal_OR_ONE_NULL
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String[] equalOrNullParams = new String[]{};
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for(String param : equalOrNullParams){
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matchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
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}
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String[] ignoreCollectionParams = new String[]{"media"};
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for(String param : ignoreCollectionParams){
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matchStrategy.setMatchMode(param, MatchMode.IGNORE);
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}
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}
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private static void addParsedIdentifiableEntityModes(IParsedMatchStrategy matchStrategy) throws MatchException {
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addAnnotatableEntityModes(matchStrategy);
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//TODO titleCache and protectedTitleCache
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//TODO lsid should be handled with MATCH
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String[] equalOrNullParams = new String[]{"lsid"};
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for(String param : equalOrNullParams){
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matchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
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}
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String[] ignoreCollectionParams = new String[]{"credits","extensions","identifiers","links","rights"};
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for(String param : ignoreCollectionParams){
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matchStrategy.setMatchMode(param, MatchMode.IGNORE);
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}
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}
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private static void addAnnotatableEntityModes(IParsedMatchStrategy matchStrategy) throws MatchException {
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// //TODO titleCache and protectedTitleCache
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//
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// //TODO lsid should be handled with MATCH
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// String[] equalOrNullParams = new String[]{"lsid"};
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// for(String param : equalOrNullParams){
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// matchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_ONE_NULL);
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// }
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String[] ignoreCollectionParams = new String[]{"sources","annotations","markers"};
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for(String param : ignoreCollectionParams){
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matchStrategy.setMatchMode(param, MatchMode.IGNORE);
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}
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}
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328
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329
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public static IParsedMatchStrategy NewParsedJournalInstance(){
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330
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331
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try {
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332
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IParsedMatchStrategy parsedJournalMatchStrategy = NewParsedInstance(Reference.class);
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addParsedReferenceMatchModes(parsedJournalMatchStrategy);
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//journals must not have an author, better MatchMode would be MatchMode.NULL
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parsedJournalMatchStrategy.setMatchMode("authorship", MatchMode.MATCH, NewParsedTeamOrPersonInstance());
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//in-reference, parsed journal has no in-reference
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parsedJournalMatchStrategy.setMatchMode("inReference", MatchMode.EQUAL_OR_FIRST_NULL);
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parsedJournalMatchStrategy.setMatchMode("title", MatchMode.EQUAL_OR_FIRST_NULL); //full title not available in parsed journal
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parsedJournalMatchStrategy.setMatchMode("abbrevTitle", MatchMode.EQUAL_REQUIRED);
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342
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//TODO caches
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343
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return parsedJournalMatchStrategy;
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} catch (MatchException e) {
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throw new RuntimeException("Exception when creating parsed journal match strategy.", e);
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}
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348
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}
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349
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350
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public static IParsedMatchStrategy NewParsedReferenceInstance(){
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IParsedMatchStrategy refStrat = ParsedReferenceMatchStrategy.INSTANCE();
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return refStrat;
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}
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354
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355
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/**
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* Returns the best matching strategy for a given reference
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* with a given reference type
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* @return the matching strategy
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359
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* @throws NullPointerException if ref is <code>null</code>
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360
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*/
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361
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public static IMatchStrategy NewParsedReferenceInstance(Reference ref) {
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362
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ReferenceType type = ref.getType();
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363
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if (type.equals(ReferenceType.Article)){
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364
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return NewParsedArticleInstance();
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}else if (type.equals(ReferenceType.Book)){
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return NewParsedBookInstance();
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}else if (type.equals(ReferenceType.BookSection)){
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return NewParsedBookSectionInstance();
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}else if (type.equals(ReferenceType.Journal)){
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return NewParsedJournalInstance();
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}else if (type.equals(ReferenceType.Generic)){
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//TODO
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return NewDefaultInstance(Reference.class);
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}else{
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//TODO
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return NewDefaultInstance(Reference.class);
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}
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}
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379
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|
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// public static IMatchStrategy NewParsedNameInstance(){
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// IMatchStrategy result = new DefaultMatchStrategy(TaxonName.class);
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// return result;
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// }
|
384
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|
385
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public static IParsedMatchStrategy NewParsedOriginalSpellingInstance(){
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386
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try {
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387
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IParsedMatchStrategy originalSpellingMatchStrategy = (IParsedMatchStrategy)NewDefaultInstance(TaxonName.class);
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addParsedIdentifiableEntityModes(originalSpellingMatchStrategy);
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389
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//authorshipCache, nameCache, fullTitleCache,
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//protectedFullTitleCache, protectedNameCache, protectedAuthorshipCache,
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//nomenclaturalSource,
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originalSpellingMatchStrategy.setMatchMode("genusOrUninomial", MatchMode.EQUAL_REQUIRED);
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originalSpellingMatchStrategy.setMatchMode("nameType", MatchMode.EQUAL_REQUIRED);
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originalSpellingMatchStrategy.setMatchMode("rank", MatchMode.EQUAL_REQUIRED); //?? MatchMode.MATCH_REQUIRED => not yet implemented as Match class
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396
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//equal
|
398
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String[] equalParams = new String[]{"acronym","anamorphic","appendedPhrase",
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"binomHybrid", "monomHybrid","trinomHybrid","hybridFormula",
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400
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"breed","cultivarName","infraGenericEpithet","infraSpecificEpithet",
|
401
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"publicationYear","originalPublicationYear","specificEpithet","subGenusAuthorship"};
|
402
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for(String param : equalParams){
|
403
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originalSpellingMatchStrategy.setMatchMode(param, MatchMode.EQUAL);
|
404
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}
|
405
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|
406
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//equal or first
|
407
|
String[] equalOrNullParams = new String[]{"nameApprobation"};
|
408
|
for(String param : equalOrNullParams){
|
409
|
originalSpellingMatchStrategy.setMatchMode(param, MatchMode.EQUAL_OR_FIRST_NULL);
|
410
|
}
|
411
|
|
412
|
//match
|
413
|
String[] authorMatchParams = new String[]{"combinationAuthorship","basionymAuthorship","exCombinationAuthorship",
|
414
|
"exBasionymAuthorship","inBasionymAuthorship", "inCombinationAuthorship"};
|
415
|
for(String param : authorMatchParams){
|
416
|
originalSpellingMatchStrategy.setMatchMode(param, MatchMode.MATCH, NewParsedTeamOrPersonInstance());
|
417
|
}
|
418
|
|
419
|
//match or first
|
420
|
String[] matchOrNullParams = new String[]{"nomenclaturalSource"};
|
421
|
for(String param : matchOrNullParams){
|
422
|
originalSpellingMatchStrategy.setMatchMode(param, MatchMode.MATCH_OR_FIRST_NULL);
|
423
|
}
|
424
|
|
425
|
//?? should be MatchMode.EQUAL_OR_FIRST_NULL for Collections
|
426
|
String[] ignoreCollectionParams = new String[]{"taxonBases", "typeDesignations", "descriptions", "registrations",
|
427
|
"relationsFromThisName", "relationsToThisName", "hybridChildRelations", "hybridParentRelations",
|
428
|
"status"};
|
429
|
for(String param : ignoreCollectionParams){
|
430
|
originalSpellingMatchStrategy.setMatchMode(param, MatchMode.IGNORE);
|
431
|
}
|
432
|
|
433
|
//ignore
|
434
|
String[] ignoreParams = new String[]{"homotypicalGroup" //??
|
435
|
,"parsingProblem", "problemEnds", "problemStarts"};
|
436
|
for(String param : ignoreParams){
|
437
|
originalSpellingMatchStrategy.setMatchMode(param, MatchMode.IGNORE);
|
438
|
}
|
439
|
|
440
|
//TODO caches
|
441
|
|
442
|
return originalSpellingMatchStrategy;
|
443
|
} catch (MatchException e) {
|
444
|
throw new RuntimeException("Exception when creating parsed original spelling match strategy.", e);
|
445
|
}
|
446
|
}
|
447
|
|
448
|
}
|