EDIT

// $Id$

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.ext.geo;

import java.util.HashSet;

import java.util.Set;

import java.util.UUID;

import org.junit.Assert;

import org.junit.Before;

import org.junit.BeforeClass;

import org.junit.Test;

import eu.etaxonomy.cdm.api.service.dto.CondensedDistribution;

import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;

import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;

import eu.etaxonomy.cdm.model.common.TermType;

import eu.etaxonomy.cdm.model.common.TermVocabulary;

import eu.etaxonomy.cdm.model.description.Distribution;

import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;

import eu.etaxonomy.cdm.model.location.NamedArea;

/**

 * Tests for {@link FloraCubaCondensedDistributionComposerOld}

 * @author a.mueller

 * @date 07.04.2016

 *

 */

public class FloraCubaCondensedDistributionComposerTest {

    private static OrderedTermVocabulary<PresenceAbsenceTerm> statusVoc;

    private static OrderedTermVocabulary<NamedArea> cubaAreasVocabualary;

    private static NamedArea cuba;

    private static NamedArea westernCuba;

    private static NamedArea eastCuba;

    private static NamedArea centralCuba;

    private static NamedArea pinarDelRio;

    private static NamedArea artemisa;

    private static NamedArea habana;

    private static NamedArea mayabeque;

    private static NamedArea matanzas;

    private static NamedArea isla_juventud;

    private static NamedArea holguin;

    private static NamedArea guantanamo;

    private static NamedArea bahamas;

    private static NamedArea oldWorld;

    private static UUID uuidStatusOccasionallyCultivated = UUID.fromString("936c3f9a-6099-4322-9792-0a72c6c2ce25");

    private static UUID uuidStatusNotNativButNaturalised = UUID.fromString("a1e26234-831e-4190-9fe3-011aca09ddba");

    private static UUID uuidStatusDoubtfullyNativeError = UUID.fromString("71b72e24-c2b6-44a5-bdab-39f083bf0f06");

    /**

     * @throws java.lang.Exception

     */

    @SuppressWarnings("unchecked")

    @BeforeClass

    public static void setUpBeforeClass() throws Exception {

        DefaultTermInitializer initializer = new DefaultTermInitializer();

        initializer.initialize();

        defineSymbolsForExistingTerms();

        statusVoc = OrderedTermVocabulary.NewInstance(TermType.PresenceAbsenceTerm);

        statusVoc.addTerm(makeStatusTerm("occasionally cultivated","oc","(c)",false, uuidStatusOccasionallyCultivated));

        statusVoc.addTerm(makeStatusTerm("not native but possibly naturalised","p","p", false,uuidStatusNotNativButNaturalised));

        statusVoc.addTerm(makeStatusTerm("doubtfully native: reported in error","df","-d",false,uuidStatusDoubtfullyNativeError));

        makeAreas();

    }

    /**

     *

     */

    private static void defineSymbolsForExistingTerms() {

        PresenceAbsenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA().setSymbol("\u25CF");

        PresenceAbsenceTerm.NATIVE().setSymbol("");

        PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE().setSymbol("?");

        PresenceAbsenceTerm.PRESENT_DOUBTFULLY().setSymbol("?");

        PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE().setSymbol("d");

        PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR().setSymbol("-");

        PresenceAbsenceTerm.REPORTED_IN_ERROR().setSymbol("-");

        PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS().setSymbol("a");

        PresenceAbsenceTerm.CULTIVATED().setSymbol("c");

        PresenceAbsenceTerm.NATURALISED().setSymbol("n");

        PresenceAbsenceTerm.CULTIVATED_PRESENCE_QUESTIONABLE().setSymbol("?c");

        PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR().setSymbol("-c");

        PresenceAbsenceTerm.NATIVE().setSymbol("");

        //Cuba specific

//      statusSymbols.put(UUID.fromString("936c3f9a-6099-4322-9792-0a72c6c2ce25"), "(c)");

//      //endemic, doubtfully present

//      statusSymbols.put(UUID.fromString("5f954f08-267a-4928-b073-12328f74c187"), "?e");

//      //non-native and doubtfully naturalised

//      statusSymbols.put(UUID.fromString("a1e26234-831e-4190-9fe3-011aca09ddba"), "p");

//      //rare casual

//      statusSymbols.put(UUID.fromString("8914ce0d-7d31-4c88-8317-985f2b3a493b"), "(a)");

//      //?non-native and doubtfully naturalised

//      statusSymbols.put(UUID.fromString("9e0b413b-5a68-4e5b-91f2-227b4f832466"), "?p");

//      //?adventive (casual) alien

//      statusSymbols.put(UUID.fromString("c42ca644-1773-4230-a2ee-328a5d4a21ab"), "?a");

//      //endemic, reported in error

//      statusSymbols.put(UUID.fromString("679b215d-c231-4ee2-ae12-3ffc3dd528ad"), "-e");

//      //naturalised, reported in error

//      statusSymbols.put(UUID.fromString("8d918a37-3add-4e1c-a233-c37dbee209aa"), "-n");

//      //non-native and doubtfully naturalised, reported in error

//      statusSymbols.put(UUID.fromString("b9153d90-9e31-465a-a28c-79077a8ed4c2"), "-p");

//      //adventive alien , reported in error

//      statusSymbols.put(UUID.fromString("9b910b7b-43e3-4260-961c-6063b11cb7dc"), "-a");

//      //doubtfully native: reported in error

//      statusSymbols.put(UUID.fromString("71b72e24-c2b6-44a5-bdab-39f083bf0f06"), "-d");

    }

    /**

     * @throws java.lang.Exception

     */

    @Before

    public void setUp() throws Exception {

    }

// ********************* TESTS ******************************/

    /**

     * Test method for {@link eu.etaxonomy.cdm.ext.geo.FloraCubaCondensedDistributionComposerOld#createCondensedDistribution(java.util.Collection, java.util.List)}.

     */

    @Test

    public void testCreateCondensedDistribution() {

        FloraCubaCondensedDistributionComposer composer = new FloraCubaCondensedDistributionComposer();

        composer.setAreaPreTag("<b>");

        composer.setAreaPostTag("</b>");

        Set<Distribution> filteredDistributions = new HashSet<Distribution>();

        filteredDistributions.add(Distribution.NewInstance(cuba, PresenceAbsenceTerm.NATURALISED()));

        filteredDistributions.add(Distribution.NewInstance(eastCuba, statusVoc.findTermByUuid(uuidStatusOccasionallyCultivated)));

        filteredDistributions.add(Distribution.NewInstance(westernCuba, statusVoc.findTermByUuid(uuidStatusDoubtfullyNativeError)));

        filteredDistributions.add(Distribution.NewInstance(pinarDelRio, PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()));

        filteredDistributions.add(Distribution.NewInstance(holguin, PresenceAbsenceTerm.NATURALISED()));

        filteredDistributions.add(Distribution.NewInstance(bahamas, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(oldWorld, PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE()));

        CondensedDistribution condensedDistribution = composer.createCondensedDistribution(filteredDistributions, null);

        String condensedString = condensedDistribution.toString();

        Assert.assertEquals("Condensed string for Cuba differs", "n<b>Cu</b>(-d<b>CuW</b>(-c<b>PR*</b>) (c)<b>CuE</b>(n<b>Ho</b>)) " + composer.getInternalAreaSeparator() + "<b>Bah</b> ?<b>VM</b> ", condensedString);

        //TODO work in progress

    }

    @Test

    public void testCreateCondensedDistributionOrderSubAreas() {

        FloraCubaCondensedDistributionComposer composer = new FloraCubaCondensedDistributionComposer();

        composer.setAreaPreTag("");

        composer.setAreaPostTag("");

        Set<Distribution> filteredDistributions = new HashSet<Distribution>();

        filteredDistributions.add(Distribution.NewInstance(cuba, PresenceAbsenceTerm.NATURALISED()));

        filteredDistributions.add(Distribution.NewInstance(eastCuba, statusVoc.findTermByUuid(uuidStatusOccasionallyCultivated)));

        filteredDistributions.add(Distribution.NewInstance(westernCuba, statusVoc.findTermByUuid(uuidStatusDoubtfullyNativeError)));

        //pinarDelRio, artemisa, habana, mayabeque, matanzas, isla_juventud

        filteredDistributions.add(Distribution.NewInstance(matanzas, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(artemisa, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(pinarDelRio, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(isla_juventud, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(mayabeque, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(habana, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(guantanamo, PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()));

        filteredDistributions.add(Distribution.NewInstance(holguin, PresenceAbsenceTerm.NATURALISED()));

        filteredDistributions.add(Distribution.NewInstance(bahamas, PresenceAbsenceTerm.NATIVE()));

        filteredDistributions.add(Distribution.NewInstance(oldWorld, PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE()));

        CondensedDistribution condensedDistribution = composer.createCondensedDistribution(filteredDistributions, null);

        String condensedString = condensedDistribution.toString();

        Assert.assertEquals("Condensed string for Cuba differs", "nCu(-dCuW(-cPR*) (c)CuE(nHo)) " + composer.getInternalAreaSeparator() + "<b>Bah</b> ?<b>VM</b> ", condensedString);

        //TODO work in progress

    }

    private static boolean makeAreas(){

        //vocabulary

        UUID cubaAreasVocabularyUuid = UUID.fromString("c81e3c7b-3c01-47d1-87cf-388de4b1908c");

        String label = "Cuba Areas";

        String abbrev = null;

        cubaAreasVocabualary = OrderedTermVocabulary.NewInstance(TermType.NamedArea, label, label, abbrev, null);

        cubaAreasVocabualary.setUuid(cubaAreasVocabularyUuid);

        //Cuba

        label = "Cuba";

        abbrev = "Cu";

        UUID uuid = UUID.fromString("d0144a6e-0e17-4a1d-bce5-d464a2aa7229");

        cuba = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Western Cuba

        label = "Western Cuba";

        abbrev = "CuW";

        uuid = UUID.randomUUID();

        westernCuba = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

//        cuba.addIncludes(westernCuba);

        //Central Cuba

        label = "Central Cuba";

        abbrev = "CuC";

        uuid = UUID.randomUUID();

        centralCuba = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        cuba.addIncludes(centralCuba);

        //East Cuba

        label = "East Cuba";

        abbrev = "CuE";

        uuid = UUID.randomUUID();

        eastCuba = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        cuba.addIncludes(eastCuba);

        cuba.addIncludes(westernCuba);

        //Pinar del Río PR

        label = "Pinar del Río";

        abbrev = "PR*";

        uuid = UUID.randomUUID();

        pinarDelRio = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(pinarDelRio);

        //Artemisa

        label = "Artemisa";

        abbrev = "Art";

        uuid = UUID.randomUUID();

        artemisa = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(artemisa);

        //Ciudad de la Habana

        label = "Ciudad de la Habana";

        abbrev = "Hab*";

        uuid = UUID.randomUUID();

        habana = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(habana);

        //Ciudad de la Habana

        label = "Mayabeque";

        abbrev = "May";

        uuid = UUID.randomUUID();

        mayabeque = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(mayabeque);

        //Matanzas Mat

        label = "Matanzas";

        abbrev = "Mat";

        uuid = UUID.randomUUID();

        matanzas = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(matanzas);

        //Isla de la Juventud IJ

        label = "Isla de la Juventud";

        abbrev = "IJ";

        uuid = UUID.randomUUID();

        isla_juventud = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        westernCuba.addIncludes(isla_juventud);

        //Provinces - Central

        //Villa Clara VC

        label = "Villa Clara";

        abbrev = "VC";

        uuid = UUID.randomUUID();

        NamedArea area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Cienfuegos Ci VC

        label = "Cienfuegos";

        abbrev = "Ci";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Sancti Spiritus SS

        label = "Sancti Spíritus";

        abbrev = "SS";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Ciego de Ávila CA

        label = "Ciego de Ávila";

        abbrev = "CA";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Camagüey Cam

        label = "Camagüey";

        abbrev = "Cam";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Las Tunas LT

        label = "Las Tunas";

        abbrev = "LT";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        centralCuba.addIncludes(area);

        //Provinces - East

        //Granma Gr

        label = "Granma";

        abbrev = "Gr";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        eastCuba.addIncludes(area);

        //Holguín Ho

        label = "Holguín";

        abbrev = "Ho";

        uuid = UUID.randomUUID();

        holguin = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        eastCuba.addIncludes(holguin);

        //Santiago de Cuba SC

        label = "Santiago de Cuba";

        abbrev = "SC";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        eastCuba.addIncludes(area);

        //Guantánamo Gu

        label = "Guantánamo";

        abbrev = "Gu";

        uuid = UUID.randomUUID();

        guantanamo = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        eastCuba.addIncludes(guantanamo);

        //other Greater Antilles (Cuba, Española, Jamaica, Puerto Rico)

        //Española Esp (=Haiti + Dominican Republic)

        label = "Española";

        abbrev = "Esp";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Jamaica Ja

        label = "Jamaica";

        abbrev = "Ja";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Puerto Rico PR

        label = "Puerto Rico";

        abbrev = "PRc";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Lesser Antilles Men

        label = "Lesser Antilles";

        abbrev = "Men";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Bahamas

        label = "Bahamas";

        abbrev = "Bah";

        uuid = UUID.randomUUID();

        bahamas = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Cayman Islands

        label = "Cayman Islands"; //[Trinidad, Tobago, Curaçao, Margarita, ABC Isl. => S. America];

        abbrev = "Cay";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //World

        //N America

        label = "N America"; //(incl. Mexico)

        abbrev = "AmN";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Central America

        label = "Central America";

        abbrev = "AmC";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //S America

        label = "S America";

        abbrev = "AmS";

        uuid = UUID.randomUUID();

        area = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        //Old World

        label = "Old World ";

        abbrev = "VM";

        uuid = UUID.randomUUID();

        oldWorld = getNamedArea(uuid, label, abbrev, cubaAreasVocabualary);

        return true;

    }

    private static NamedArea getNamedArea(UUID uuid, String label, String abbrev, TermVocabulary<NamedArea> vocabulary) {

        NamedArea result = NamedArea.NewInstance(label, label, abbrev);

        result.setUuid(uuid);

        vocabulary.addTerm(result);

        result.setIdInVocabulary(abbrev);

        return result;

    }

    private static PresenceAbsenceTerm makeStatusTerm(String desc, String abbrev, String symbol, boolean absent, UUID uuid) {

        PresenceAbsenceTerm result = PresenceAbsenceTerm.NewPresenceInstance(desc, desc, abbrev);

        result.setAbsenceTerm(absent);

        result.setUuid(uuid);

        result.setSymbol(symbol);

        return result;

    }

}