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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import junit.framework.Assert;
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import org.apache.log4j.Logger;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Ignore;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
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//import eu.etaxonomy.cdm.model.reference.Article;
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//import eu.etaxonomy.cdm.model.reference.Generic;
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import eu.etaxonomy.cdm.model.reference.IArticle;
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import eu.etaxonomy.cdm.model.reference.IGeneric;
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import eu.etaxonomy.cdm.model.reference.INomenclaturalReference;
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import eu.etaxonomy.cdm.model.reference.IReferenceBase;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.test.unit.EntityTestBase;
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/**
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* @author a.mueller
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*
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*/
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public class NonViralNameTest extends EntityTestBase {
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private static Logger logger = Logger.getLogger(NonViralNameTest.class);
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NonViralName<?> nonViralName1;
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NonViralName<?> nonViralName2;
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ReferenceFactory refFactory;
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@BeforeClass
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public static void setUpBeforeClass() {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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}
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/**
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* @throws java.lang.Exception
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*/
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@Before
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public void setUp() throws Exception {
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nonViralName1 = new BotanicalName();
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nonViralName2 = new BotanicalName();
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refFactory = ReferenceFactory.newInstance();
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}
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/**
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* @throws java.lang.Exception
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*/
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@After
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public void tearDown() throws Exception {
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}
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// ******************* TESTS ***********************************/
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#generateTitle()}.
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*/
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@Test
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public final void testGenerateTitle() {
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String fullName = "Abies alba subsp. beta (L.) Mill.";
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nonViralName1.setGenusOrUninomial("Genus");
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nonViralName1.setSpecificEpithet("spec");
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nonViralName1.setRank(Rank.SPECIES());
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assertEquals("Genus spec", nonViralName1.generateTitle());
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assertEquals("", nonViralName2.generateTitle());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#isCodeCompliant()}.
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*/
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@Test
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public final void testIsCodeCompliant() {
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logger.warn("Not yet implemented"); // TODO
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#NonViralName()}.
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*/
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@Test
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public final void testNonViralName() {
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assertNotNull(nonViralName1);
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#NonViralName(eu.etaxonomy.cdm.model.name.Rank)}.
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*/
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@Test
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public final void testNonViralNameRank() {
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NonViralName<?> nonViralName = NonViralName.NewInstance(Rank.GENUS());
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assertNotNull(nonViralName);
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#NonViralName(eu.etaxonomy.cdm.model.name.Rank, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.agent.Agent, eu.etaxonomy.cdm.model.reference.INomenclaturalReference, java.lang.String)}.
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*/
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@Test
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public final void testNonViralNameRankStringStringStringAgentINomenclaturalReferenceString() {
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Team agent = Team.NewInstance();
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INomenclaturalReference article = refFactory.newArticle();
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HomotypicalGroup homotypicalGroup = HomotypicalGroup.NewInstance();
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NonViralName<?> nonViralName = new NonViralName(Rank.GENUS(), "Genus", "infraGen", "species", "infraSpec", agent, article, "mikro", homotypicalGroup);
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assertEquals("Genus", nonViralName.getGenusOrUninomial() );
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assertEquals("infraGen", nonViralName.getInfraGenericEpithet());
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assertEquals("species", nonViralName.getSpecificEpithet() );
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assertEquals("infraSpec", nonViralName.getInfraSpecificEpithet());
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assertEquals(agent, nonViralName.getCombinationAuthorTeam() );
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assertEquals(article, nonViralName.getNomenclaturalReference() );
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assertEquals("mikro", nonViralName.getNomenclaturalMicroReference() );
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getCombinationAuthorTeam()}.
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#setCombinationAuthorTeam(eu.etaxonomy.cdm.model.agent.Agent)}.
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*/
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@Test
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public final void testGetSetCombinationAuthorTeam() {
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Team team1 = Team.NewInstance();
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nonViralName1.setCombinationAuthorTeam(team1);
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assertEquals(team1, nonViralName1.getCombinationAuthorTeam());
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nonViralName1.setCombinationAuthorTeam(null);
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assertEquals(null, nonViralName1.getCombinationAuthorTeam());
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nonViralName2.setCombinationAuthorTeam(null);
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assertEquals(null, nonViralName2.getCombinationAuthorTeam());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getExCombinationAuthorTeam()}.
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*/
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@Test
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public final void testGetSetExCombinationAuthorTeam() {
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Team team1 = Team.NewInstance();
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nonViralName1.setExCombinationAuthorTeam(team1);
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assertEquals(team1, nonViralName1.getExCombinationAuthorTeam());
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nonViralName1.setExCombinationAuthorTeam(null);
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assertEquals(null, nonViralName1.getExCombinationAuthorTeam());
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nonViralName2.setExCombinationAuthorTeam(null);
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assertEquals(null, nonViralName2.getExCombinationAuthorTeam());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getCombinationAuthorTeam()}.
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#setCombinationAuthorTeam(eu.etaxonomy.cdm.model.agent.Agent)}.
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*/
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@Test
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public final void testGetSetBasionymAuthorTeam() {
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Team team1 = Team.NewInstance();
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nonViralName1.setBasionymAuthorTeam(team1);
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assertEquals(team1, nonViralName1.getBasionymAuthorTeam());
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nonViralName1.setBasionymAuthorTeam(null);
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assertEquals(null, nonViralName1.getBasionymAuthorTeam());
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nonViralName2.setBasionymAuthorTeam(null);
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assertEquals(null, nonViralName2.getBasionymAuthorTeam());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getExCombinationAuthorTeam()}.
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*/
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@Test
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public final void testGetSetExBasionymAuthorTeam() {
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Team team1 = Team.NewInstance();
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nonViralName1.setExBasionymAuthorTeam(team1);
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assertEquals(team1, nonViralName1.getExBasionymAuthorTeam());
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nonViralName1.setExBasionymAuthorTeam(null);
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assertEquals(null, nonViralName1.getExBasionymAuthorTeam());
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nonViralName2.setExBasionymAuthorTeam(null);
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assertEquals(null, nonViralName2.getExBasionymAuthorTeam());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getGenusOrUninomial()}.
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*/
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@Test
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public final void testGetSetGenusOrUninomial() {
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nonViralName1.setGenusOrUninomial("Genus");
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assertEquals("Genus", nonViralName1.getGenusOrUninomial());
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nonViralName1.setGenusOrUninomial(null);
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assertEquals(null, nonViralName1.getGenusOrUninomial());
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nonViralName2.setGenusOrUninomial(null);
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assertEquals(null, nonViralName2.getGenusOrUninomial());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getInfraGenericEpithet()}.
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*/
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@Test
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public final void testGetSetInfraGenericEpithet() {
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nonViralName1.setInfraGenericEpithet("InfraGenus");
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assertEquals("InfraGenus", nonViralName1.getInfraGenericEpithet());
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nonViralName1.setInfraGenericEpithet(null);
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assertEquals(null, nonViralName1.getInfraGenericEpithet());
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nonViralName2.setInfraGenericEpithet(null);
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assertEquals(null, nonViralName2.getInfraGenericEpithet());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getSpecificEpithet()}.
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*/
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@Test
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public final void testGetSetSpecificEpithet() {
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nonViralName1.setSpecificEpithet("specEpi");
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assertEquals("specEpi", nonViralName1.getSpecificEpithet());
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nonViralName1.setSpecificEpithet(null);
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assertEquals(null, nonViralName1.getSpecificEpithet());
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nonViralName2.setSpecificEpithet(null);
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assertEquals(null, nonViralName2.getSpecificEpithet());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getInfraSpecificEpithet()}.
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*/
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@Test
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public final void testGetSetInfraSpecificEpithet() {
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nonViralName1.setInfraSpecificEpithet("InfraSpecEpi");
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assertEquals("InfraSpecEpi", nonViralName1.getInfraSpecificEpithet());
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nonViralName1.setInfraSpecificEpithet(null);
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assertEquals(null, nonViralName1.getInfraSpecificEpithet());
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nonViralName2.setInfraSpecificEpithet(null);
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assertEquals(null, nonViralName2.getInfraSpecificEpithet());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#setAuthorshipCache(java.lang.String)}.
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* Test method for {@link eu.etaxonomy.cdm.model.name.NonViralName#getAuthorshipCache()}.
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* NOT FINISHED YET
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*/
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@Test
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public final void testGetSetAuthorshipCache() {
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String strTeam1 = "Team1";
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String strTeam2 = "Team2";
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String strTeam3 = "Team3";
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IGeneric ref1 = refFactory.newGeneric();
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ref1.setTitleCache("RefTitle",true);
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Team team1 = Team.NewInstance();
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Team team2 = Team.NewInstance();
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team1.setNomenclaturalTitle(strTeam1);
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team2.setNomenclaturalTitle(strTeam2);
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nonViralName1.setGenusOrUninomial("Abies");
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nonViralName1.setSpecificEpithet("alba");
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nonViralName1.setNomenclaturalReference(ref1);
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Assert.assertEquals("Abies alba", nonViralName1.getNameCache());
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nonViralName1.setCombinationAuthorTeam(team1);
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assertEquals(team1, nonViralName1.getCombinationAuthorTeam());
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assertEquals(strTeam1, nonViralName1.getAuthorshipCache());
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Assert.assertEquals("Abies alba "+strTeam1, nonViralName1.getTitleCache());
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Assert.assertEquals("Abies alba "+strTeam1+ ", RefTitle", nonViralName1.getFullTitleCache());
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nonViralName1.setAuthorshipCache(strTeam2);
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assertEquals(strTeam2, nonViralName1.getAuthorshipCache());
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nonViralName1.setGenusOrUninomial("Calendula");
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Assert.assertEquals("Calendula alba "+strTeam2, nonViralName1.getTitleCache());
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nonViralName1.setAuthorshipCache(strTeam3);
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Assert.assertEquals("Calendula alba "+strTeam3, nonViralName1.getTitleCache());
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Assert.assertEquals("Calendula alba "+strTeam3+ ", RefTitle", nonViralName1.getFullTitleCache());
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nonViralName1.setCombinationAuthorTeam(null);
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assertEquals(null, nonViralName1.getCombinationAuthorTeam());
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}
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@Test
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public final void testGetChildAndParentRelationships() {
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NonViralName nonViralName1 = new NonViralName();
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assertEquals(0, nonViralName1.getParentRelationships().size());
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assertEquals(0, nonViralName1.getChildRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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HybridRelationship hybridRelationship = new HybridRelationship(nonViralName1, femaleParent, HybridRelationshipType.FEMALE_PARENT(), null );
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assertEquals(1, nonViralName1.getChildRelationships().size());
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assertEquals(hybridRelationship, nonViralName1.getChildRelationships().iterator().next());
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assertEquals(1, femaleParent.getParentRelationships().size());
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}
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@Test
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public final void testAddHybridRelationships() {
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NonViralName nonViralName1 = new NonViralName();
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assertEquals(0, nonViralName1.getParentRelationships().size());
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assertEquals(0, nonViralName1.getChildRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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BotanicalName maleParent = BotanicalName.NewInstance(null);
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nonViralName1.addHybridParent(femaleParent, HybridRelationshipType.MALE_PARENT(), null);
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nonViralName1.addHybridParent(maleParent, HybridRelationshipType.MALE_PARENT(), null);
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assertEquals(2, nonViralName1.getChildRelationships().size());
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assertEquals(0, nonViralName1.getParentRelationships().size());
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assertEquals(1, maleParent.getParentRelationships().size());
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assertEquals(1, femaleParent.getParentRelationships().size());
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assertEquals(0, maleParent.getChildRelationships().size());
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assertEquals(0, femaleParent.getChildRelationships().size());
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}
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@Test(expected=IllegalArgumentException.class)
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public final void testAddHybridRelationship() {
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NonViralName nonViralName1 = new NonViralName();
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assertEquals(0, nonViralName1.getParentRelationships().size());
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assertEquals(0, nonViralName1.getChildRelationships().size());
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NonViralName botanicalName2 = new NonViralName();
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botanicalName2.addHybridRelationship(null);
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}
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@Test
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public final void testRemoveHybridRelationship() {
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NonViralName botanicalName1 = new NonViralName();
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assertEquals(0, botanicalName1.getParentRelationships().size());
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assertEquals(0, botanicalName1.getChildRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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332
|
NonViralName maleParent = NonViralName.NewInstance(null);
|
|
333
|
ZoologicalName child = ZoologicalName.NewInstance(null);
|
|
334
|
|
|
335
|
botanicalName1.addHybridParent(femaleParent, HybridRelationshipType.FEMALE_PARENT(), null);
|
|
336
|
botanicalName1.addHybridParent(maleParent, HybridRelationshipType.MALE_PARENT(), null);
|
|
337
|
botanicalName1.addHybridChild(child, HybridRelationshipType.FIRST_PARENT(), null);
|
|
338
|
assertEquals(2, botanicalName1.getChildRelationships().size());
|
|
339
|
assertEquals(1, botanicalName1.getParentRelationships().size());
|
|
340
|
assertEquals(1, child.getChildRelationships().size());
|
|
341
|
|
|
342
|
botanicalName1.removeHybridParent(femaleParent);
|
|
343
|
assertEquals(1, botanicalName1.getChildRelationships().size());
|
|
344
|
assertEquals(1, botanicalName1.getParentRelationships().size());
|
|
345
|
|
|
346
|
botanicalName1.removeHybridParent(maleParent);
|
|
347
|
assertEquals(0, botanicalName1.getChildRelationships().size());
|
|
348
|
assertEquals(1, botanicalName1.getParentRelationships().size());
|
|
349
|
|
|
350
|
botanicalName1.removeHybridChild(child);
|
|
351
|
assertEquals(0, botanicalName1.getParentRelationships().size());
|
|
352
|
|
|
353
|
//null
|
|
354
|
botanicalName1.removeHybridRelationship(null);
|
|
355
|
assertEquals(0, botanicalName1.getChildRelationships().size());
|
|
356
|
}
|
|
357
|
}
|