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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.common;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.service.IService;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.User;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.occurrence.Specimen;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonomicTree;
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/**
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* @author a.mueller
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* @created 11.05.2009
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* @version 1.0
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*/
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public abstract class ImportStateBase<CONFIG extends ImportConfiguratorBase, IO extends CdmImportBase> extends IoStateBase<CONFIG, IO> {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(ImportStateBase.class);
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private Map<Object,TaxonomicTree> treeMap = new HashMap<Object,TaxonomicTree>();
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private Map<ReferenceBase,UUID> treeUuidMap = new HashMap<ReferenceBase,UUID>();
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private Map<String,UUID> taxonomicTreeKeyUuidMap = new HashMap<String,UUID>();
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private Map<UUID, ExtensionType> extensionTypeMap = new HashMap<UUID, ExtensionType>();
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private Map<UUID, MarkerType> markerTypeMap = new HashMap<UUID, MarkerType>();
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private Map<UUID, AnnotationType> annotationTypeMap = new HashMap<UUID, AnnotationType>();
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private Map<UUID, NamedArea> namedAreaMap = new HashMap<UUID, NamedArea>();
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private Map<UUID, Feature> featureMap = new HashMap<UUID, Feature>();
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protected ImportStateBase(CONFIG config){
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this.config = config;
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stores.put(ICdmIO.USER_STORE, new MapWrapper<User>(service));
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stores.put(ICdmIO.PERSON_STORE, new MapWrapper<Person>(service));
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stores.put(ICdmIO.TEAM_STORE, new MapWrapper<TeamOrPersonBase<?>>(service));
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stores.put(ICdmIO.REFERENCE_STORE, new MapWrapper<ReferenceBase>(service));
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stores.put(ICdmIO.NOMREF_STORE, new MapWrapper<ReferenceBase>(service));
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stores.put(ICdmIO.NOMREF_DETAIL_STORE, new MapWrapper<ReferenceBase>(service));
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stores.put(ICdmIO.REF_DETAIL_STORE, new MapWrapper<ReferenceBase>(service));
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stores.put(ICdmIO.TAXONNAME_STORE, new MapWrapper<TaxonNameBase<?,?>>(service));
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stores.put(ICdmIO.TAXON_STORE, new MapWrapper<TaxonBase>(service));
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stores.put(ICdmIO.SPECIMEN_STORE, new MapWrapper<Specimen>(service));
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}
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//different type of stores that are used by the known imports
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protected Map<String, MapWrapper<? extends CdmBase>> stores = new HashMap<String, MapWrapper<? extends CdmBase>>();
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protected IService<CdmBase> service = null;
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/**
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* @return the stores
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*/
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public Map<String, MapWrapper<? extends CdmBase>> getStores() {
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return stores;
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}
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/**
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* @param stores the stores to set
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*/
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public void setStores(Map<String, MapWrapper<? extends CdmBase>> stores) {
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this.stores = stores;
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}
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public MapWrapper<? extends CdmBase> getStore(String storeLabel){
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return (MapWrapper<? extends CdmBase>) stores.get(storeLabel);
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}
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/**
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* @return the treeMap
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*/
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public TaxonomicTree getTree(Object ref) {
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return treeMap.get(ref);
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}
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/**
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* @param treeMap the treeMap to set
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*/
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public void putTree(Object ref, TaxonomicTree tree) {
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if (tree != null){
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this.treeMap.put(ref, tree);
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}
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}
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public int countTrees(){
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return treeUuidMap.size();
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}
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/**
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* @return the treeUuid
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*/
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public UUID getTreeUuid(ReferenceBase ref) {
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return treeUuidMap.get(ref);
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}
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public void putTreeUuid(ReferenceBase ref, TaxonomicTree tree) {
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if (tree != null && tree.getUuid() != null){
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this.treeUuidMap.put(ref, tree.getUuid());
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}
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}
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public int countTreeUuids(){
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return treeUuidMap.size();
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}
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/**
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* Adds a taxonomic tree uuid to the taxonomic tree uuid map,
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* which maps a key for the taxonomic tree to its UUID in the CDM
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* @param treeKeyId
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* @param tree
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*/
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public void putTaxonomicTreeUuidInt(int treeKeyId, TaxonomicTree tree) {
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putTaxonomicTreeUuid(String.valueOf(treeKeyId), tree);
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}
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public void putTaxonomicTreeUuid(String treeKey, TaxonomicTree tree) {
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if (tree != null && tree.getUuid() != null){
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this.taxonomicTreeKeyUuidMap.put(treeKey, tree.getUuid());
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}
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}
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public UUID getTreeUuidByIntTreeKey(int treeKey) {
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return taxonomicTreeKeyUuidMap.get(String.valueOf(treeKey));
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}
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public UUID getTreeUuidByTreeKey(String treeKey) {
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return taxonomicTreeKeyUuidMap.get(treeKey);
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}
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public ExtensionType getExtensionType(UUID uuid){
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return extensionTypeMap.get(uuid);
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}
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public void putExtensionType(ExtensionType extensionType){
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extensionTypeMap.put(extensionType.getUuid(), extensionType);
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}
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public MarkerType getMarkerType(UUID uuid){
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return markerTypeMap.get(uuid);
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}
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public void putMarkerType(MarkerType markerType){
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markerTypeMap.put(markerType.getUuid(), markerType);
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}
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public AnnotationType getAnnotationType(UUID uuid){
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return annotationTypeMap.get(uuid);
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}
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public void putAnnotationType(AnnotationType annotationType){
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annotationTypeMap.put(annotationType.getUuid(), annotationType);
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}
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public NamedArea getNamedArea(UUID uuid){
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return namedAreaMap.get(uuid);
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}
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public void putNamedArea(NamedArea namedArea){
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namedAreaMap.put(namedArea.getUuid(), namedArea);
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}
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public Feature getFeature(UUID uuid){
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return featureMap.get(uuid);
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}
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public void putFeature(Feature feature){
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featureMap.put(feature.getUuid(), feature);
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}
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}
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