EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy 

* http://www.e-taxonomy.eu

* 

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.pesi;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.CdmApplicationController;

import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;

import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.description.FeatureNode;

import eu.etaxonomy.cdm.model.description.FeatureTree;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

/**

 * TODO add the following to a wiki page:

 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen 

 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.

 * 

 * 

 * @author a.mueller

 *

 */

public class EuroMedActivator {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(EuroMedActivator.class);

	//database validation status (create, update, validate ...)

	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

//	static final Source berlinModelSource = BerlinModelSources.euroMed();

	static final Source berlinModelSource = BerlinModelSources.EDIT_CICHORIEAE();

//	static final Source berlinModelSource = BerlinModelSources.EDIT_Diptera();

	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_andreasM();

	static final int sourceSecId = 7000000; //500000

	static final UUID taxonomicTreeUuid = UUID.fromString("314a68f9-8449-495a-91c2-92fde8bcf344");

	static final UUID featureTreeUuid = UUID.fromString("6a5e1c2b-ec0d-46c8-9c7d-a2059267ffb7");

	static final Object[] featureKeyList = new Integer[]{1, 31, 4, 98, 41}; 	

	// set to zero for unlimited nameFacts

	static final int maximumNumberOfNameFacts = 0;

	static final int partitionSize = 2000;

	//check - import

	static final CHECK check = CHECK.CHECK_AND_IMPORT;

	//editor - import

	static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;

	//NomeclaturalCode

	static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;

	//ignore null

	static final boolean ignoreNull = true;

	static boolean useTaxonomicTree = true;

// **************** ALL *********************	

//

	static final boolean doUser = true;

	//authors

	static final boolean doAuthors = true;

	//references

	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;

	//names

	static final boolean doTaxonNames = true;

	static final boolean doRelNames = true;

	static final boolean doNameStatus = true;

	static final boolean doTypes = true;

	static final boolean doNameFacts = true;

	//taxa

	static final boolean doTaxa = true;

	static final boolean doRelTaxa = true;

	static final boolean doFacts = true;

	static final boolean doOccurences = true;

	static final boolean doCommonNames = true;

	//etc.

	static final boolean doMarker = true;

// **************** SELECTED *********************

//	static final boolean doUser = true;

//	//authors

//	static final boolean doAuthors = false;

//	//references

//	static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;

//	//names

//	static final boolean doTaxonNames = false;

//	static final boolean doRelNames = false;

//	static final boolean doNameStatus = false;

//	static final boolean doTypes = false;

//	static final boolean doNameFacts = false;

//	

//	//taxa 

//	static final boolean doTaxa = false;

//	static final boolean doRelTaxa = false;

//	static final boolean doFacts = false;

//	static final boolean doOccurences = false;

//	

//	//etc.

//	static final boolean doMarker = false;

	/**

	 * @param args

	 */

	public static void main(String[] args) {

		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");

		//make BerlinModel Source

		Source source = berlinModelSource;

		ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;

		BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);

		bmImportConfigurator.setTaxonomicTreeUuid(taxonomicTreeUuid);

		bmImportConfigurator.setSourceSecId(sourceSecId);

		bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);

		bmImportConfigurator.setIgnoreNull(ignoreNull);

		bmImportConfigurator.setDoAuthors(doAuthors);

		bmImportConfigurator.setDoReferences(doReferences);

		bmImportConfigurator.setDoTaxonNames(doTaxonNames);

		bmImportConfigurator.setDoRelNames(doRelNames);

		bmImportConfigurator.setDoNameStatus(doNameStatus);

		bmImportConfigurator.setDoTypes(doTypes);

		bmImportConfigurator.setDoNameFacts(doNameFacts);

		bmImportConfigurator.setUseTaxonomicTree(useTaxonomicTree);

		bmImportConfigurator.setDoTaxa(doTaxa);

		bmImportConfigurator.setDoRelTaxa(doRelTaxa);

		bmImportConfigurator.setDoFacts(doFacts);

		bmImportConfigurator.setDoOccurrence(doOccurences);

		bmImportConfigurator.setDoCommonNames(doCommonNames);

		bmImportConfigurator.setDoMarker(doMarker);

		bmImportConfigurator.setDoUser(doUser);

		bmImportConfigurator.setEditor(editor);

		bmImportConfigurator.setDbSchemaValidation(hbm2dll);

		// maximum number of name facts to import

		bmImportConfigurator.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts);

		bmImportConfigurator.setCheck(check);

		bmImportConfigurator.setEditor(editor);

		bmImportConfigurator.setRecordsPerTransaction(partitionSize);

		// invoke import

		CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();

		bmImport.invoke(bmImportConfigurator);

		if (doFacts && bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){

			CdmApplicationController app = bmImport.getCdmAppController();

			//make feature tree

			FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);

			FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());

			tree.getRoot().addChild(imageNode);

			FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());

			tree.getRoot().addChild(distributionNode, 2); 

			app.getFeatureTreeService().saveOrUpdate(tree);

		}

		System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");

	}

}